Wall clock time and date at job start Tue Mar 31 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.53007 * 109.47326 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.46837 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00592 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99845 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00100 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.47092 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.55226 * 304.87212 * 9 8 7 11 11 C 1.53288 * 109.51330 * 184.74673 * 9 8 7 12 12 N 1.47148 * 108.38852 * 187.77202 * 11 9 8 13 13 C 1.36938 * 120.98705 * 230.55902 * 12 11 9 14 14 H 1.08001 * 119.99863 * 153.29877 * 13 12 11 15 15 C 1.38813 * 119.99808 * 333.30057 * 13 12 11 16 16 N 1.31618 * 119.99580 * 343.54885 * 15 13 12 17 17 Si 1.86796 * 119.99837 * 163.55016 * 15 13 12 18 18 H 1.48500 * 109.47585 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46899 * 120.00079 * 17 15 13 20 20 H 1.48505 * 109.47044 * 239.99720 * 17 15 13 21 21 C 1.47159 * 118.03554 * 50.53264 * 12 11 9 22 22 C 1.53301 * 108.38149 * 309.47195 * 21 12 11 23 23 O 1.42952 * 109.22472 * 52.29798 * 22 21 12 24 24 H 1.08995 * 109.47478 * 300.00259 * 1 2 3 25 25 H 1.09005 * 109.46988 * 60.00401 * 1 2 3 26 26 H 1.09002 * 109.47154 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47712 * 239.99898 * 2 1 3 28 28 H 1.09002 * 109.47436 * 119.99836 * 2 1 3 29 29 H 1.09001 * 109.47331 * 60.00178 * 3 2 1 30 30 H 1.08995 * 109.47327 * 299.99575 * 3 2 1 31 31 H 1.08996 * 109.47027 * 60.00198 * 4 3 2 32 32 H 1.09004 * 109.46790 * 300.00172 * 4 3 2 33 33 H 0.97000 * 119.99867 * 359.97438 * 7 5 4 34 34 H 1.09001 * 109.47467 * 60.00241 * 8 7 5 35 35 H 1.08995 * 109.47425 * 299.99495 * 8 7 5 36 36 H 1.08995 * 109.47084 * 180.12716 * 10 9 8 37 37 H 1.09004 * 109.47359 * 300.12730 * 10 9 8 38 38 H 1.08997 * 109.47160 * 60.12628 * 10 9 8 39 39 H 1.09001 * 109.68566 * 307.49753 * 11 9 8 40 40 H 1.09003 * 109.68257 * 68.01010 * 11 9 8 41 41 H 0.97005 * 119.99361 * 179.97438 * 16 15 13 42 42 H 1.08993 * 109.68793 * 189.74305 * 21 12 11 43 43 H 1.09006 * 109.67927 * 69.18579 * 21 12 11 44 44 H 1.08999 * 109.50973 * 172.22266 * 22 21 12 45 45 H 1.09001 * 109.50729 * 292.32081 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0722 2.8633 0.0013 6 8 3.2842 3.7852 0.0008 7 7 5.3974 3.1097 0.0014 8 6 5.8856 4.4908 0.0014 9 6 7.4157 4.4909 0.0022 10 6 7.9272 3.6667 1.1855 11 6 7.9276 5.9308 0.1218 12 7 9.3868 5.9219 -0.0677 13 6 10.2177 6.5423 0.8267 14 1 11.2341 6.1979 0.9482 15 6 9.7535 7.6139 1.5771 16 7 8.6532 8.2408 1.2185 17 14 10.6906 8.1661 3.0958 18 1 11.8847 7.3031 3.2818 19 1 11.1208 9.5773 2.9260 20 1 9.8109 8.0568 4.2872 21 6 9.9270 5.2259 -1.2464 22 6 9.3176 3.8203 -1.2994 23 8 7.8939 3.9212 -1.2187 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9288 0.8909 33 1 6.0277 2.3724 0.0014 34 1 5.5223 5.0047 0.8914 35 1 5.5225 5.0047 -0.8886 36 1 9.0171 3.6695 1.1860 37 1 7.5622 4.1016 2.1160 38 1 7.5665 2.6419 1.0974 39 1 7.4618 6.5509 -0.6440 40 1 7.6875 6.3249 1.1093 41 1 8.3287 8.9894 1.7432 42 1 11.0115 5.1531 -1.1649 43 1 9.6624 5.7750 -2.1501 44 1 9.5959 3.3379 -2.2363 45 1 9.6896 3.2305 -0.4616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107743253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:08 Heat of formation + Delta-G solvation = -78.462373 kcal Electronic energy + Delta-G solvation = -23383.683136 eV Core-core repulsion = 20015.302064 eV Total energy + Delta-G solvation = -3368.381072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.79710 -38.79413 -35.60388 -34.82972 -34.32126 -31.86373 -31.27281 -30.48184 -27.96525 -26.63666 -25.82941 -24.12369 -23.23854 -21.46510 -21.02577 -20.12695 -18.68904 -17.19124 -16.80589 -16.13513 -15.84621 -15.42093 -15.09887 -14.64058 -14.36950 -14.07374 -13.89048 -13.78020 -13.49409 -13.22675 -13.04518 -12.70681 -12.47259 -12.34598 -11.90378 -11.60639 -11.44277 -11.36405 -11.20850 -11.16214 -11.02779 -10.84185 -10.73960 -10.67556 -10.32218 -10.24765 -10.01191 -9.70198 -9.52221 -9.04340 -8.78400 -8.55907 -6.75207 -5.86179 -3.30172 2.83388 3.31575 3.39094 3.41028 3.41897 4.24545 4.42124 4.69035 4.74291 4.77529 5.09599 5.14702 5.15874 5.32565 5.33783 5.46426 5.49846 5.54577 5.64375 5.65818 5.67467 5.74283 5.90293 5.92622 5.94602 6.02634 6.09790 6.10053 6.13490 6.22635 6.31102 6.45372 6.58372 6.70032 6.75774 6.81023 7.05818 7.45558 7.69481 7.72678 7.87607 8.31485 8.43120 9.09170 9.72135 10.29554 11.21774 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.003472 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.070378 B = 8062.981788 C = 8621.086099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.141 4.141 5 C 0.506 3.494 6 O -0.547 6.547 7 N -0.720 5.720 8 C 0.139 3.861 9 C 0.078 3.922 10 C -0.161 4.161 11 C 0.160 3.840 12 N -0.591 5.591 13 C -0.254 4.254 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.901 5.901 17 Si 0.903 3.097 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.288 1.288 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.384 6.384 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.401 0.599 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.041 0.959 39 H 0.029 0.971 40 H 0.096 0.904 41 H 0.255 0.745 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.086 -16.273 -2.079 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.181 4.181 5 C 0.292 3.708 6 O -0.425 6.425 7 N -0.372 5.372 8 C 0.015 3.985 9 C 0.037 3.963 10 C -0.219 4.219 11 C 0.033 3.967 12 N -0.315 5.315 13 C -0.383 4.383 14 H 0.086 0.914 15 C -0.196 4.196 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.215 1.215 21 C -0.018 4.018 22 C -0.032 4.032 23 O -0.304 6.304 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.236 0.764 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.812 -15.491 -2.139 17.950 hybrid contribution 1.081 0.175 0.927 1.435 sum -7.731 -15.316 -1.212 17.200 Atomic orbital electron populations 1.21760 0.95813 1.01380 1.02050 1.21553 0.96048 0.96779 1.01894 1.21368 0.92898 0.96355 1.03651 1.21691 0.97992 0.94231 1.04162 1.20709 0.82319 0.91599 0.76142 1.90696 1.55375 1.46575 1.49853 1.46082 1.06834 1.09532 1.74745 1.21322 0.91947 0.82420 1.02814 1.22546 0.91582 0.97718 0.84449 1.22198 1.03187 0.98079 0.98415 1.21284 0.83897 0.88621 1.02872 1.44006 1.01787 1.62366 1.23302 1.19194 0.95606 1.09022 1.14499 0.91393 1.25060 0.98163 0.95731 1.00616 1.70024 1.24042 1.21798 1.38647 0.86220 0.79234 0.78247 0.83054 1.20255 1.21626 1.21462 1.21604 0.97357 0.91731 0.91065 1.23030 0.81580 0.98296 1.00292 1.87821 1.21294 1.83146 1.38110 0.92664 0.92667 0.92908 0.92043 0.92057 0.91232 0.91220 0.89092 0.89165 0.76408 0.90136 0.90959 0.90803 0.91896 0.93972 0.95272 0.88600 0.93466 0.92045 0.95657 0.90215 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.15 0.37 -0.76 16 2 C -0.13 -0.97 5.93 -26.74 -0.16 -1.12 16 3 C -0.10 -1.05 4.50 -26.73 -0.12 -1.17 16 4 C -0.14 -1.39 5.70 -27.88 -0.16 -1.55 16 5 C 0.51 7.30 7.83 -10.98 -0.09 7.21 16 6 O -0.55 -10.13 15.98 5.56 0.09 -10.04 16 7 N -0.72 -10.28 5.19 -60.30 -0.31 -10.59 16 8 C 0.14 2.41 4.85 -4.04 -0.02 2.39 16 9 C 0.08 1.45 0.78 -90.47 -0.07 1.38 16 10 C -0.16 -2.72 7.86 37.16 0.29 -2.43 16 11 C 0.16 3.73 4.11 -3.54 -0.01 3.71 16 12 N -0.59 -14.35 2.56 -171.82 -0.44 -14.79 16 13 C -0.25 -6.73 9.65 -15.06 -0.15 -6.87 16 14 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 15 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 16 N -0.90 -25.66 11.14 55.49 0.62 -25.04 16 17 Si 0.90 21.21 29.58 -169.99 -5.03 16.18 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.11 2.22 6.74 -3.53 -0.02 2.20 16 22 C 0.05 0.79 6.60 37.31 0.25 1.03 16 23 O -0.38 -7.06 10.17 -35.23 -0.36 -7.42 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.40 4.91 7.00 -40.82 -0.29 4.62 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.07 1.36 6.11 -51.93 -0.32 1.05 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.58 6.59 -51.93 -0.34 0.24 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 2.47 6.16 -51.93 -0.32 2.15 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.79 6.26 -51.93 -0.32 0.46 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -30.81 353.69 -7.97 -38.78 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.89 Total: 3.57 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 0.02 Total: 4.02 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.14 Total: -50.42 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.27 Total: -17.46 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.81 -7.97 -38.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107743253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.684 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds