Wall clock time and date at job start Tue Mar 31 2020 02:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00037 * 2 1 4 4 H 1.48500 * 109.47041 * 240.00462 * 3 2 1 5 5 H 1.48498 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46926 * 120.00066 * 3 2 1 7 7 C 1.38814 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00169 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47368 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47368 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00209 * 180.02562 * 12 11 10 14 14 O 1.21289 * 119.99735 * 359.97438 * 13 12 11 15 15 C 1.50693 * 119.99942 * 180.02562 * 13 12 11 16 16 N 1.46509 * 109.47014 * 179.97438 * 15 13 12 17 17 C 1.34779 * 119.99795 * 180.02562 * 16 15 13 18 18 O 1.21578 * 120.00186 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99572 * 179.97438 * 17 16 15 20 20 C 1.47024 * 125.64847 * 359.68614 * 19 17 16 21 21 C 1.54327 * 107.26851 * 181.32598 * 20 19 17 22 22 C 1.55154 * 102.94372 * 22.19158 * 21 20 19 23 23 C 1.47426 * 125.64645 * 179.97438 * 19 17 16 24 24 H 0.97004 * 119.99996 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99618 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47106 * 59.99844 * 10 9 7 27 27 H 1.09001 * 109.47010 * 299.99878 * 10 9 7 28 28 H 1.09003 * 109.47442 * 59.99616 * 11 10 9 29 29 H 1.09001 * 109.47003 * 299.99940 * 11 10 9 30 30 H 0.97003 * 119.99641 * 359.97438 * 12 11 10 31 31 H 1.08999 * 109.47855 * 59.99748 * 15 13 12 32 32 H 1.08995 * 109.46982 * 299.99024 * 15 13 12 33 33 H 0.97004 * 119.99661 * 359.97438 * 16 15 13 34 34 H 1.08997 * 109.88062 * 300.74548 * 20 19 17 35 35 H 1.09000 * 109.88248 * 61.90735 * 20 19 17 36 36 H 1.09005 * 110.71834 * 263.82776 * 21 20 19 37 37 H 1.08999 * 110.71553 * 140.55738 * 21 20 19 38 38 H 1.09000 * 111.00849 * 206.42090 * 22 21 20 39 39 H 1.09001 * 111.00585 * 82.56882 * 22 21 20 40 40 H 1.09004 * 110.36499 * 274.44757 * 23 19 17 41 41 H 1.08998 * 110.36482 * 36.65820 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0638 -4.8197 0.0001 12 7 1.7963 -6.0885 0.0007 13 6 1.1224 -7.2557 0.0008 14 8 -0.0905 -7.2556 0.0009 15 6 1.8759 -8.5607 0.0021 16 7 0.9239 -9.6743 0.0026 17 6 1.3732 -10.9450 0.0042 18 8 2.5685 -11.1671 0.0047 19 7 0.4973 -11.9694 0.0051 20 6 -0.9676 -11.8442 0.0112 21 6 -1.5493 -13.2733 0.0441 22 6 -0.3802 -14.1111 0.6259 23 6 0.8495 -13.4009 0.0064 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 -0.0005 26 1 2.6847 -3.7146 0.8894 27 1 2.6847 -3.7146 -0.8905 28 1 0.4367 -4.7622 -0.8896 29 1 0.4375 -4.7618 0.8903 30 1 2.7663 -6.0885 0.0003 31 1 2.5020 -8.6181 0.8924 32 1 2.5031 -8.6189 -0.8875 33 1 -0.0298 -9.4970 0.0025 34 1 -1.2889 -11.2927 0.8947 35 1 -1.2994 -11.3296 -0.8906 36 1 -1.8022 -13.6100 -0.9613 37 1 -2.4201 -13.3201 0.6981 38 1 -0.4401 -15.1480 0.2951 39 1 -0.3596 -14.0504 1.7140 40 1 1.0170 -13.7513 -1.0121 41 1 1.7362 -13.5729 0.6166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127034994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:38 Heat of formation + Delta-G solvation = -50.704551 kcal Electronic energy + Delta-G solvation = -21459.266904 eV Core-core repulsion = 17988.549158 eV Total energy + Delta-G solvation = -3470.717746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.64402 -39.61884 -37.78187 -35.86738 -34.57791 -33.93456 -32.03017 -31.29536 -29.52503 -28.67257 -26.79510 -23.95601 -23.33225 -21.64669 -21.52497 -20.59237 -20.24715 -18.75788 -17.38486 -17.00901 -16.60735 -16.34767 -15.97077 -15.57456 -15.03921 -14.65677 -14.39644 -14.20262 -13.99429 -13.60724 -13.48014 -13.22346 -13.14696 -12.94466 -12.84177 -12.48815 -11.80954 -11.66867 -11.49283 -11.21904 -11.14798 -10.87548 -10.81673 -10.47906 -10.20028 -10.05063 -9.76527 -9.46758 -9.08001 -8.91011 -8.84356 -7.02657 -5.82036 -3.13047 2.19125 2.49065 2.94119 3.12228 3.41558 3.45857 3.47151 3.72512 4.12776 4.20147 4.45600 4.52195 4.61473 4.81648 4.93282 5.13115 5.14171 5.18147 5.27892 5.39379 5.41440 5.44798 5.46931 5.51328 5.69052 5.71499 5.88031 5.90168 6.06090 6.13232 6.37733 6.65259 6.65314 6.74726 7.42737 7.63282 7.67302 8.09285 8.31400 8.35461 9.46728 10.00871 10.35463 11.40383 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.054867 B = 0.002143 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.206440 B =13065.656224 C =13513.407329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.111 3.889 12 N -0.716 5.716 13 C 0.506 3.494 14 O -0.541 6.541 15 C 0.120 3.880 16 N -0.732 5.732 17 C 0.726 3.274 18 O -0.591 6.591 19 N -0.637 5.637 20 C 0.095 3.905 21 C -0.130 4.130 22 C -0.135 4.135 23 C 0.124 3.876 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.404 0.596 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.408 0.592 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.815 -28.609 0.311 28.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.013 4.013 12 N -0.367 5.367 13 C 0.291 3.709 14 O -0.419 6.419 15 C -0.009 4.009 16 N -0.390 5.390 17 C 0.427 3.573 18 O -0.469 6.469 19 N -0.376 5.376 20 C -0.028 4.028 21 C -0.168 4.168 22 C -0.173 4.173 23 C 0.001 3.999 24 H 0.067 0.933 25 H 0.220 0.780 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.238 0.762 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.634 -28.518 0.306 28.527 hybrid contribution 0.110 1.155 -0.021 1.161 sum -0.524 -27.362 0.286 27.369 Atomic orbital electron populations 1.69658 1.05157 1.26002 1.57066 1.24791 0.95587 0.97864 1.02595 0.86209 0.78486 0.83220 0.77883 1.21164 1.21605 1.21171 1.19150 0.91032 0.83834 1.43637 0.91035 1.42175 1.05988 0.99542 1.89758 1.20763 0.93465 0.85624 0.98578 1.21631 0.95498 0.81390 1.02742 1.45821 1.10755 1.05810 1.74301 1.20434 0.88266 0.85577 0.76600 1.90703 1.13811 1.87346 1.50043 1.20897 0.91600 0.83421 1.04941 1.44743 1.10942 1.03325 1.80040 1.15267 0.84309 0.79768 0.77922 1.90932 1.13555 1.83831 1.58629 1.47526 1.05913 1.05711 1.78499 1.22060 0.80205 0.98541 1.01994 1.22609 0.98292 0.93582 1.02287 1.22817 0.94060 0.99333 1.01083 1.22090 0.98279 0.78509 1.00996 0.93291 0.78006 0.95678 0.95670 0.91073 0.91078 0.76187 0.88337 0.88330 0.75394 0.91330 0.91299 0.90360 0.89798 0.89592 0.90470 0.91575 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.27 5.60 -59.91 -0.34 -18.61 16 10 C 0.14 2.73 6.37 -4.04 -0.03 2.71 16 11 C 0.11 1.81 5.79 -4.04 -0.02 1.79 16 12 N -0.72 -8.99 5.56 -60.30 -0.33 -9.32 16 13 C 0.51 6.58 7.90 -10.99 -0.09 6.49 16 14 O -0.54 -8.87 15.67 5.55 0.09 -8.79 16 15 C 0.12 1.27 6.15 -5.19 -0.03 1.24 16 16 N -0.73 -8.33 5.49 -66.41 -0.36 -8.69 16 17 C 0.73 9.08 8.49 -86.91 -0.74 8.34 16 18 O -0.59 -9.28 16.59 5.30 0.09 -9.19 16 19 N -0.64 -6.12 3.33 -176.22 -0.59 -6.70 16 20 C 0.10 0.65 6.15 -3.06 -0.02 0.63 16 21 C -0.13 -0.58 6.95 -24.90 -0.17 -0.75 16 22 C -0.13 -0.63 7.09 -24.57 -0.17 -0.80 16 23 C 0.12 0.94 6.91 -2.52 -0.02 0.92 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.39 10.23 7.67 -40.82 -0.31 9.92 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.40 3.89 8.47 -40.82 -0.35 3.55 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.41 4.52 6.42 -40.82 -0.26 4.26 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.67 8.03 -51.93 -0.42 0.26 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -35.11 346.03 -8.45 -43.55 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.38 Total: 9.54 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -1.54 Total: 13.17 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -0.90 Total: -70.67 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.17 Total: -17.98 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.11 -8.45 -43.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127034994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.152 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds