Wall clock time and date at job start Tue Mar 31 2020 02:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00037 * 2 1 4 4 H 1.48500 * 109.47041 * 240.00462 * 3 2 1 5 5 H 1.48498 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46926 * 120.00066 * 3 2 1 7 7 C 1.38814 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00169 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47368 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47368 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00209 * 180.02562 * 12 11 10 14 14 O 1.21289 * 119.99735 * 359.97438 * 13 12 11 15 15 C 1.50693 * 119.99942 * 180.02562 * 13 12 11 16 16 N 1.46509 * 109.47014 * 179.97438 * 15 13 12 17 17 C 1.34779 * 119.99795 * 180.02562 * 16 15 13 18 18 O 1.21578 * 120.00186 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99572 * 179.97438 * 17 16 15 20 20 C 1.47024 * 125.64847 * 359.68614 * 19 17 16 21 21 C 1.54327 * 107.26851 * 181.32598 * 20 19 17 22 22 C 1.55154 * 102.94372 * 22.19158 * 21 20 19 23 23 C 1.47426 * 125.64645 * 179.97438 * 19 17 16 24 24 H 0.97004 * 119.99996 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99618 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47106 * 59.99844 * 10 9 7 27 27 H 1.09001 * 109.47010 * 299.99878 * 10 9 7 28 28 H 1.09003 * 109.47442 * 59.99616 * 11 10 9 29 29 H 1.09001 * 109.47003 * 299.99940 * 11 10 9 30 30 H 0.97003 * 119.99641 * 359.97438 * 12 11 10 31 31 H 1.08999 * 109.47855 * 59.99748 * 15 13 12 32 32 H 1.08995 * 109.46982 * 299.99024 * 15 13 12 33 33 H 0.97004 * 119.99661 * 359.97438 * 16 15 13 34 34 H 1.08997 * 109.88062 * 300.74548 * 20 19 17 35 35 H 1.09000 * 109.88248 * 61.90735 * 20 19 17 36 36 H 1.09005 * 110.71834 * 263.82776 * 21 20 19 37 37 H 1.08999 * 110.71553 * 140.55738 * 21 20 19 38 38 H 1.09000 * 111.00849 * 206.42090 * 22 21 20 39 39 H 1.09001 * 111.00585 * 82.56882 * 22 21 20 40 40 H 1.09004 * 110.36499 * 274.44757 * 23 19 17 41 41 H 1.08998 * 110.36482 * 36.65820 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0638 -4.8197 0.0001 12 7 1.7963 -6.0885 0.0007 13 6 1.1224 -7.2557 0.0008 14 8 -0.0905 -7.2556 0.0009 15 6 1.8759 -8.5607 0.0021 16 7 0.9239 -9.6743 0.0026 17 6 1.3732 -10.9450 0.0042 18 8 2.5685 -11.1671 0.0047 19 7 0.4973 -11.9694 0.0051 20 6 -0.9676 -11.8442 0.0112 21 6 -1.5493 -13.2733 0.0441 22 6 -0.3802 -14.1111 0.6259 23 6 0.8495 -13.4009 0.0064 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 -0.0005 26 1 2.6847 -3.7146 0.8894 27 1 2.6847 -3.7146 -0.8905 28 1 0.4367 -4.7622 -0.8896 29 1 0.4375 -4.7618 0.8903 30 1 2.7663 -6.0885 0.0003 31 1 2.5020 -8.6181 0.8924 32 1 2.5031 -8.6189 -0.8875 33 1 -0.0298 -9.4970 0.0025 34 1 -1.2889 -11.2927 0.8947 35 1 -1.2994 -11.3296 -0.8906 36 1 -1.8022 -13.6100 -0.9613 37 1 -2.4201 -13.3201 0.6981 38 1 -0.4401 -15.1480 0.2951 39 1 -0.3596 -14.0504 1.7140 40 1 1.0170 -13.7513 -1.0121 41 1 1.7362 -13.5729 0.6166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127034994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:37 Heat of formation + Delta-G solvation = -78.361286 kcal Electronic energy + Delta-G solvation = -21460.466190 eV Core-core repulsion = 17988.549158 eV Total energy + Delta-G solvation = -3471.917032 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54742 -40.65534 -38.51323 -37.38511 -35.68555 -35.45313 -33.23849 -32.61326 -30.32435 -29.79810 -28.05818 -25.51696 -24.35514 -23.09314 -22.10144 -21.67128 -21.09814 -19.62073 -19.28059 -17.77460 -17.67612 -17.37286 -16.98646 -16.74175 -16.44235 -16.01682 -15.58586 -15.34693 -15.14859 -14.80799 -14.55414 -14.30418 -14.22266 -13.96468 -13.69528 -13.23700 -13.04298 -13.03432 -12.63008 -12.54134 -12.21465 -12.14124 -12.12185 -11.87725 -11.59473 -11.47937 -11.18883 -10.98031 -10.43044 -10.20231 -9.58177 -9.06348 -7.96951 -5.28130 1.34739 1.42245 1.48930 1.52180 1.58298 2.00306 2.08269 2.57542 2.94549 3.37180 3.53542 3.67881 3.73002 4.00403 4.06969 4.16964 4.20477 4.30160 4.32772 4.33198 4.48682 4.58772 4.63234 4.85855 4.92752 4.99362 4.99846 5.11988 5.13717 5.21656 5.23957 5.30340 5.36415 5.48782 5.94002 6.23965 6.39533 6.81476 7.05713 7.30349 7.39579 8.02495 8.24901 9.26334 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.054867 B = 0.002143 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.206440 B =13065.656224 C =13513.407329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.083 0.917 9 N -0.747 5.747 10 C 0.147 3.853 11 C 0.129 3.871 12 N -0.703 5.703 13 C 0.512 3.488 14 O -0.576 6.576 15 C 0.127 3.873 16 N -0.731 5.731 17 C 0.719 3.281 18 O -0.629 6.629 19 N -0.639 5.639 20 C 0.088 3.912 21 C -0.122 4.122 22 C -0.124 4.124 23 C 0.115 3.885 24 H 0.252 0.748 25 H 0.374 0.626 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.421 0.579 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.410 0.590 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 -29.850 0.312 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.808 3.192 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.381 4.381 8 H 0.101 0.899 9 N -0.391 5.391 10 C 0.020 3.980 11 C 0.004 3.996 12 N -0.356 5.356 13 C 0.298 3.702 14 O -0.456 6.456 15 C -0.001 4.001 16 N -0.389 5.389 17 C 0.420 3.580 18 O -0.511 6.511 19 N -0.377 5.377 20 C -0.034 4.034 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.008 4.008 24 H 0.061 0.939 25 H 0.206 0.794 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.258 0.742 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.248 0.752 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.131 -29.813 0.307 29.815 hybrid contribution -0.102 1.439 -0.026 1.443 sum 0.029 -28.375 0.282 28.376 Atomic orbital electron populations 1.69826 1.06764 1.26352 1.59067 1.25672 0.96463 1.01461 1.03377 0.85131 0.77109 0.78686 0.78318 1.20167 1.22312 1.20172 1.19615 0.91736 0.84898 1.41824 0.89937 1.42409 1.05770 1.01069 1.89809 1.20870 0.93659 0.84092 0.99396 1.21185 0.94751 0.82191 1.01478 1.45585 1.11521 1.04458 1.74007 1.20784 0.87820 0.86159 0.75415 1.90695 1.15504 1.87822 1.51572 1.20915 0.91200 0.81669 1.06317 1.44744 1.11090 1.03280 1.79825 1.15455 0.84218 0.80361 0.77934 1.90894 1.15193 1.84436 1.60532 1.47695 1.06883 1.05915 1.77212 1.22273 0.78634 1.00468 1.02074 1.22631 0.98463 0.91595 1.03317 1.22801 0.92383 1.00162 1.00888 1.22296 0.99283 0.77834 1.01340 0.93901 0.79403 0.94383 0.94374 0.92441 0.92446 0.74155 0.86887 0.86876 0.75232 0.91299 0.91205 0.89355 0.88186 0.87373 0.90511 0.91150 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.33 13.06 21.65 0.28 -59.04 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 3 Si 0.98 45.47 29.55 68.60 2.03 47.49 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.25 -13.65 9.99 84.03 0.84 -12.81 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.75 -37.30 5.60 -343.46 -1.92 -39.23 16 10 C 0.15 5.38 6.37 86.38 0.55 5.93 16 11 C 0.13 4.12 5.79 86.38 0.50 4.62 16 12 N -0.70 -16.58 5.56 -463.07 -2.57 -19.15 16 13 C 0.51 12.73 7.90 87.66 0.69 13.42 16 14 O -0.58 -18.67 15.67 -3.06 -0.05 -18.72 16 15 C 0.13 2.52 6.15 85.63 0.53 3.05 16 16 N -0.73 -16.15 5.49 -482.30 -2.65 -18.80 16 17 C 0.72 17.73 8.49 179.05 1.52 19.25 16 18 O -0.63 -19.69 16.59 -3.96 -0.07 -19.76 16 19 N -0.64 -11.86 3.33 -829.71 -2.76 -14.62 16 20 C 0.09 1.09 6.15 86.73 0.53 1.63 16 21 C -0.12 -0.81 6.95 31.78 0.22 -0.59 16 22 C -0.12 -0.90 7.09 31.99 0.23 -0.68 16 23 C 0.11 1.64 6.91 86.86 0.60 2.24 16 24 H 0.25 14.98 8.31 -92.71 -0.77 14.20 16 25 H 0.37 20.17 7.67 -92.70 -0.71 19.46 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.42 7.12 8.47 -92.71 -0.79 6.33 16 31 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.41 8.89 6.42 -92.71 -0.60 8.30 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 37 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.93 8.14 -2.38 -0.02 0.92 16 41 H 0.06 1.10 8.03 -2.39 -0.02 1.09 16 Total: -1.00 -75.56 346.03 -2.07 -77.63 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -1.04 Total: 32.07 kcal Atomic # 6 Polarization: 25.45 SS G_CDS: 6.68 Total: 32.13 kcal Atomic # 7 Polarization: -141.22 SS G_CDS: -9.62 Total: -150.84 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.11 Total: -38.48 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -75.56 -2.07 -77.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127034994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.734 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds