Wall clock time and date at job start Tue Mar 31 2020 02:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00114 * 2 1 4 4 H 1.48504 * 109.47476 * 270.00276 * 3 2 1 5 5 H 1.48503 * 109.47343 * 30.00105 * 3 2 1 6 6 H 1.48502 * 109.47034 * 150.00126 * 3 2 1 7 7 C 1.38819 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99426 * 359.97438 * 7 2 1 9 9 N 1.36928 * 119.99856 * 180.02562 * 7 2 1 10 10 C 1.46505 * 120.00037 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47140 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46770 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99598 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00259 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99848 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.49701 * 60.06077 * 15 13 12 17 17 C 1.53042 * 109.49754 * 180.13062 * 15 13 12 18 18 C 1.53035 * 109.53824 * 181.28404 * 17 15 13 19 19 C 1.53190 * 109.33949 * 298.68270 * 18 17 15 20 20 N 1.46931 * 108.77834 * 54.61732 * 19 18 17 21 21 C 1.34781 * 120.62919 * 126.41153 * 20 19 18 22 22 N 1.34772 * 120.00171 * 354.97103 * 21 20 19 23 23 O 1.21582 * 119.99311 * 174.96618 * 21 20 19 24 24 C 1.46927 * 118.73830 * 306.39812 * 20 19 18 25 25 H 0.97001 * 119.99790 * 359.97438 * 1 2 3 26 26 H 0.97002 * 120.00519 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.46948 * 59.99348 * 10 9 7 28 28 H 1.08999 * 109.46466 * 299.99615 * 10 9 7 29 29 H 1.08999 * 109.47208 * 59.99854 * 11 10 9 30 30 H 1.09007 * 109.46999 * 299.99519 * 11 10 9 31 31 H 0.96999 * 120.00441 * 359.97438 * 12 11 10 32 32 H 1.08992 * 109.43088 * 61.27877 * 17 15 13 33 33 H 1.09004 * 109.47941 * 301.31879 * 17 15 13 34 34 H 1.09002 * 109.50187 * 178.71235 * 18 17 15 35 35 H 1.09005 * 109.49813 * 58.64886 * 18 17 15 36 36 H 1.09004 * 109.58881 * 174.40704 * 19 18 17 37 37 H 1.09002 * 109.58775 * 294.83509 * 19 18 17 38 38 H 0.97003 * 120.00203 * 5.06216 * 22 21 20 39 39 H 0.96993 * 120.00133 * 185.06679 * 22 21 20 40 40 H 1.08997 * 109.58291 * 173.39365 * 24 20 19 41 41 H 1.09002 * 109.57997 * 293.67695 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0009 12 7 6.3487 -3.4602 -0.0014 13 6 7.6965 -3.4602 -0.0018 14 8 8.3029 -2.4099 -0.0022 15 6 8.4500 -4.7653 -0.0018 16 1 8.1875 -5.3370 -0.8919 17 6 9.9548 -4.4864 0.0010 18 6 10.7209 -5.8108 -0.0313 19 6 10.3773 -6.6262 1.2193 20 7 8.9178 -6.7751 1.3006 21 6 8.3577 -7.9952 1.4204 22 7 9.1288 -9.0991 1.3648 23 8 7.1568 -8.0997 1.5787 24 6 8.0806 -5.5688 1.2491 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3622 0.0004 27 1 3.8490 -3.0416 -0.8918 28 1 3.8484 -3.0434 0.8882 29 1 5.8796 -1.6206 0.8896 30 1 5.8796 -1.6191 -0.8905 31 1 5.8637 -4.3002 -0.0015 32 1 10.2197 -3.9355 0.9033 33 1 10.2163 -3.8941 -0.8759 34 1 11.7922 -5.6110 -0.0524 35 1 10.4381 -6.3731 -0.9212 36 1 10.8419 -7.6100 1.1531 37 1 10.7414 -6.1067 2.1057 38 1 10.0938 -9.0146 1.3125 39 1 8.7190 -9.9781 1.3771 40 1 7.0299 -5.8550 1.2026 41 1 8.2558 -4.9644 2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131007928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:32 Heat of formation + Delta-G solvation = -53.150487 kcal Electronic energy + Delta-G solvation = -22356.362729 eV Core-core repulsion = 18885.538920 eV Total energy + Delta-G solvation = -3470.823810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.93562 -39.69277 -37.45896 -35.85451 -34.38385 -33.96509 -32.73214 -31.88622 -31.16848 -28.16690 -25.79316 -24.71875 -23.24099 -21.92179 -21.46059 -20.37330 -19.78439 -18.87940 -17.81930 -17.38321 -16.87232 -15.97676 -15.85608 -15.44332 -15.18197 -14.79534 -14.72983 -14.37599 -13.98616 -13.76186 -13.62659 -13.57956 -13.40679 -12.94261 -12.61711 -11.95067 -11.54430 -11.49340 -11.48205 -11.35733 -11.07285 -10.89704 -10.84116 -10.55460 -10.15334 -10.06947 -9.87121 -9.60626 -9.07169 -9.01436 -8.88094 -7.28979 -5.78480 -3.15836 2.26480 2.63172 2.84533 3.15449 3.39195 3.42694 3.46752 3.66390 4.25317 4.32336 4.45224 4.55425 4.58726 4.69845 4.85403 4.98453 5.14613 5.26476 5.33789 5.38736 5.41295 5.46140 5.51778 5.62960 5.66310 5.77359 5.92857 5.95927 5.98886 6.33765 6.38448 6.52785 6.60748 6.63253 7.43554 7.50816 7.95388 8.19770 8.23643 8.39601 9.17349 9.89491 10.07914 11.39460 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027186 B = 0.003054 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.712730 B = 9165.757989 C =10047.044898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.092 0.908 9 N -0.753 5.753 10 C 0.147 3.853 11 C 0.107 3.893 12 N -0.721 5.721 13 C 0.518 3.482 14 O -0.539 6.539 15 C -0.122 4.122 16 H 0.102 0.898 17 C -0.100 4.100 18 C -0.135 4.135 19 C 0.109 3.891 20 N -0.627 5.627 21 C 0.709 3.291 22 N -0.869 5.869 23 O -0.587 6.587 24 C 0.138 3.862 25 H 0.260 0.740 26 H 0.363 0.637 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.403 0.597 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.395 0.605 39 H 0.414 0.586 40 H 0.101 0.899 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.004 -17.953 1.224 32.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.020 3.980 11 C -0.017 4.017 12 N -0.372 5.372 13 C 0.303 3.697 14 O -0.416 6.416 15 C -0.145 4.145 16 H 0.120 0.880 17 C -0.138 4.138 18 C -0.174 4.174 19 C -0.014 4.014 20 N -0.365 5.365 21 C 0.409 3.591 22 N -0.439 5.439 23 O -0.465 6.465 24 C 0.014 3.986 25 H 0.071 0.929 26 H 0.196 0.804 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.237 0.763 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.226 0.774 39 H 0.246 0.754 40 H 0.120 0.880 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 26.361 -17.161 1.337 31.483 hybrid contribution 0.633 0.481 -0.087 0.800 sum 26.994 -16.680 1.249 31.756 Atomic orbital electron populations 1.69702 1.05118 1.25964 1.57177 1.24676 0.95266 0.97310 1.01720 0.86536 0.79278 0.84781 0.77896 1.20944 1.21608 1.20177 1.19022 0.80234 0.94898 1.43616 0.89059 1.42530 1.04153 1.01845 1.91366 1.20745 0.87636 0.90231 0.99423 1.21615 0.92545 0.85101 1.02432 1.45978 1.06226 1.10378 1.74625 1.20317 0.82332 0.90721 0.76330 1.90711 1.68146 1.33243 1.49476 1.21743 0.97195 0.94680 1.00858 0.88023 1.21325 0.91631 0.96616 1.04201 1.21960 1.00877 0.96609 0.97918 1.21719 0.80106 1.00574 0.99040 1.47201 1.06749 1.05034 1.77550 1.15848 0.85095 0.80677 0.77516 1.43163 1.10294 1.07962 1.82483 1.91001 1.13081 1.85488 1.56905 1.21407 0.96518 0.84244 0.96392 0.92949 0.80414 0.94862 0.94800 0.91287 0.91323 0.76276 0.90736 0.90494 0.90062 0.91233 0.90368 0.90834 0.77428 0.75373 0.88034 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.89 22.39 27.74 -169.99 -4.71 17.67 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 7 C -0.25 -7.11 10.47 -15.06 -0.16 -7.27 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.75 -18.13 5.41 -59.91 -0.32 -18.46 16 10 C 0.15 2.80 6.37 -4.04 -0.03 2.77 16 11 C 0.11 1.72 5.79 -4.04 -0.02 1.70 16 12 N -0.72 -9.30 5.46 -60.29 -0.33 -9.63 16 13 C 0.52 6.67 7.16 -10.98 -0.08 6.60 16 14 O -0.54 -8.93 15.98 5.56 0.09 -8.85 16 15 C -0.12 -1.11 2.68 -91.65 -0.25 -1.36 16 16 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.10 -0.78 4.46 -26.69 -0.12 -0.90 16 18 C -0.14 -0.65 6.08 -26.62 -0.16 -0.81 16 19 C 0.11 0.50 6.43 -3.71 -0.02 0.47 16 20 N -0.63 -4.96 2.97 -178.50 -0.53 -5.49 16 21 C 0.71 6.91 8.57 -86.92 -0.75 6.17 16 22 N -0.87 -4.60 8.79 27.63 0.24 -4.36 16 23 O -0.59 -8.54 16.61 5.29 0.09 -8.46 16 24 C 0.14 1.27 5.56 -3.71 -0.02 1.25 16 25 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 26 H 0.36 8.57 5.53 -40.82 -0.23 8.34 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.40 4.37 8.01 -40.82 -0.33 4.04 16 32 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.16 5.57 -51.93 -0.29 -0.13 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.40 0.91 6.29 -40.82 -0.26 0.65 16 39 H 0.41 1.83 8.93 -40.82 -0.36 1.47 16 40 H 0.10 1.07 6.63 -51.93 -0.34 0.72 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -37.39 333.53 -7.42 -44.80 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.04 Total: 7.79 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -1.70 Total: 8.71 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -0.17 Total: -66.70 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.18 Total: -17.30 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.39 -7.42 -44.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131007928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.346 kcal (2) G-P(sol) polarization free energy of solvation -37.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds