Wall clock time and date at job start Tue Mar 31 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00114 * 2 1 4 4 H 1.48504 * 109.47476 * 270.00276 * 3 2 1 5 5 H 1.48503 * 109.47343 * 30.00105 * 3 2 1 6 6 H 1.48502 * 109.47034 * 150.00126 * 3 2 1 7 7 C 1.38819 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99426 * 359.97438 * 7 2 1 9 9 N 1.36928 * 119.99856 * 180.02562 * 7 2 1 10 10 C 1.46505 * 120.00037 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47140 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46770 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99598 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00259 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99848 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.49701 * 60.06077 * 15 13 12 17 17 C 1.53042 * 109.49754 * 180.13062 * 15 13 12 18 18 C 1.53035 * 109.53824 * 181.28404 * 17 15 13 19 19 C 1.53190 * 109.33949 * 298.68270 * 18 17 15 20 20 N 1.46931 * 108.77834 * 54.61732 * 19 18 17 21 21 C 1.34781 * 120.62919 * 126.41153 * 20 19 18 22 22 N 1.34772 * 120.00171 * 354.97103 * 21 20 19 23 23 O 1.21582 * 119.99311 * 174.96618 * 21 20 19 24 24 C 1.46927 * 118.73830 * 306.39812 * 20 19 18 25 25 H 0.97001 * 119.99790 * 359.97438 * 1 2 3 26 26 H 0.97002 * 120.00519 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.46948 * 59.99348 * 10 9 7 28 28 H 1.08999 * 109.46466 * 299.99615 * 10 9 7 29 29 H 1.08999 * 109.47208 * 59.99854 * 11 10 9 30 30 H 1.09007 * 109.46999 * 299.99519 * 11 10 9 31 31 H 0.96999 * 120.00441 * 359.97438 * 12 11 10 32 32 H 1.08992 * 109.43088 * 61.27877 * 17 15 13 33 33 H 1.09004 * 109.47941 * 301.31879 * 17 15 13 34 34 H 1.09002 * 109.50187 * 178.71235 * 18 17 15 35 35 H 1.09005 * 109.49813 * 58.64886 * 18 17 15 36 36 H 1.09004 * 109.58881 * 174.40704 * 19 18 17 37 37 H 1.09002 * 109.58775 * 294.83509 * 19 18 17 38 38 H 0.97003 * 120.00203 * 5.06216 * 22 21 20 39 39 H 0.96993 * 120.00133 * 185.06679 * 22 21 20 40 40 H 1.08997 * 109.58291 * 173.39365 * 24 20 19 41 41 H 1.09002 * 109.57997 * 293.67695 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0009 12 7 6.3487 -3.4602 -0.0014 13 6 7.6965 -3.4602 -0.0018 14 8 8.3029 -2.4099 -0.0022 15 6 8.4500 -4.7653 -0.0018 16 1 8.1875 -5.3370 -0.8919 17 6 9.9548 -4.4864 0.0010 18 6 10.7209 -5.8108 -0.0313 19 6 10.3773 -6.6262 1.2193 20 7 8.9178 -6.7751 1.3006 21 6 8.3577 -7.9952 1.4204 22 7 9.1288 -9.0991 1.3648 23 8 7.1568 -8.0997 1.5787 24 6 8.0806 -5.5688 1.2491 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3622 0.0004 27 1 3.8490 -3.0416 -0.8918 28 1 3.8484 -3.0434 0.8882 29 1 5.8796 -1.6206 0.8896 30 1 5.8796 -1.6191 -0.8905 31 1 5.8637 -4.3002 -0.0015 32 1 10.2197 -3.9355 0.9033 33 1 10.2163 -3.8941 -0.8759 34 1 11.7922 -5.6110 -0.0524 35 1 10.4381 -6.3731 -0.9212 36 1 10.8419 -7.6100 1.1531 37 1 10.7414 -6.1067 2.1057 38 1 10.0938 -9.0146 1.3125 39 1 8.7190 -9.9781 1.3771 40 1 7.0299 -5.8550 1.2026 41 1 8.2558 -4.9644 2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131007928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:30 Heat of formation + Delta-G solvation = -84.605914 kcal Electronic energy + Delta-G solvation = -22357.726739 eV Core-core repulsion = 18885.538920 eV Total energy + Delta-G solvation = -3472.187819 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.69397 -40.66485 -38.24381 -37.41851 -35.57788 -35.06517 -33.53615 -33.33214 -32.27550 -29.73108 -26.43484 -25.87512 -24.64150 -23.19301 -22.57679 -21.31643 -20.50124 -19.85953 -19.44202 -18.18817 -17.76925 -17.16772 -16.83151 -16.44063 -16.27097 -15.83897 -15.78456 -15.65043 -15.34515 -14.96992 -14.66771 -14.63470 -14.29910 -14.11159 -13.63349 -13.44497 -13.19145 -12.73450 -12.62686 -12.51661 -12.10329 -12.00487 -11.96736 -11.83872 -11.66794 -11.34096 -11.05041 -10.94294 -10.69877 -10.18384 -9.65251 -9.38325 -8.06343 -5.42187 1.38209 1.40695 1.44107 1.47998 1.78469 2.08266 2.13402 2.46039 3.21488 3.25140 3.54285 3.66920 3.77828 3.79544 3.95332 4.03101 4.12687 4.18167 4.25591 4.50520 4.53270 4.54919 4.74517 4.74709 4.90320 4.98870 5.04845 5.07348 5.17573 5.31935 5.41138 5.42353 5.70924 5.82641 6.02374 6.16528 6.45627 6.90721 7.01799 7.14544 7.61044 7.75756 7.94444 9.14643 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027186 B = 0.003054 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.712730 B = 9165.757989 C =10047.044898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.253 1.253 7 C -0.240 4.240 8 H 0.061 0.939 9 N -0.758 5.758 10 C 0.149 3.851 11 C 0.123 3.877 12 N -0.714 5.714 13 C 0.519 3.481 14 O -0.575 6.575 15 C -0.108 4.108 16 H 0.114 0.886 17 C -0.100 4.100 18 C -0.126 4.126 19 C 0.103 3.897 20 N -0.624 5.624 21 C 0.702 3.298 22 N -0.847 5.847 23 O -0.643 6.643 24 C 0.141 3.859 25 H 0.260 0.740 26 H 0.367 0.633 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.414 0.586 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.412 0.588 39 H 0.420 0.580 40 H 0.085 0.915 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.346 -18.775 1.109 35.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.253 4.253 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.177 1.177 7 C -0.371 4.371 8 H 0.079 0.921 9 N -0.404 5.404 10 C 0.022 3.978 11 C -0.002 4.002 12 N -0.366 5.366 13 C 0.305 3.695 14 O -0.455 6.455 15 C -0.130 4.130 16 H 0.131 0.869 17 C -0.138 4.138 18 C -0.164 4.164 19 C -0.018 4.018 20 N -0.361 5.361 21 C 0.401 3.599 22 N -0.419 5.419 23 O -0.525 6.525 24 C 0.016 3.984 25 H 0.069 0.931 26 H 0.201 0.799 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.250 0.750 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.246 0.754 39 H 0.253 0.747 40 H 0.104 0.896 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 29.809 -18.053 1.216 34.870 hybrid contribution -0.380 0.616 -0.048 0.725 sum 29.429 -17.437 1.168 34.227 Atomic orbital electron populations 1.69877 1.07111 1.26901 1.59194 1.25522 0.96156 1.01358 1.02218 0.85406 0.78628 0.79490 0.78261 1.20217 1.21953 1.17746 1.19008 0.82250 0.93777 1.42056 0.92121 1.42526 1.02741 1.03884 1.91265 1.20835 0.89077 0.88244 0.99644 1.21238 0.90707 0.86369 1.01910 1.45886 1.06483 1.09780 1.74499 1.20962 0.81946 0.91635 0.74924 1.90694 1.68753 1.34919 1.51088 1.21683 0.97637 0.92416 1.01292 0.86854 1.21345 0.90795 0.98339 1.03293 1.21925 1.01716 0.94636 0.98119 1.22016 0.77931 1.02551 0.99339 1.47200 1.08039 1.03997 1.76894 1.16102 0.84658 0.81757 0.77354 1.42951 1.10970 1.07053 1.80882 1.90965 1.15684 1.86369 1.59453 1.21248 0.96140 0.84827 0.96195 0.93127 0.79933 0.94262 0.94440 0.91940 0.91787 0.74969 0.91640 0.91503 0.87717 0.90815 0.87213 0.90023 0.75396 0.74691 0.89620 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.51 13.97 21.65 0.30 -63.21 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.96 46.16 27.74 68.60 1.90 48.06 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.25 -11.13 6.52 99.48 0.65 -10.48 16 7 C -0.24 -13.92 10.47 84.04 0.88 -13.04 16 8 H 0.06 3.82 8.06 -2.91 -0.02 3.79 16 9 N -0.76 -36.02 5.41 -343.44 -1.86 -37.87 16 10 C 0.15 5.54 6.37 86.38 0.55 6.09 16 11 C 0.12 3.84 5.79 86.38 0.50 4.34 16 12 N -0.71 -17.86 5.46 -463.05 -2.53 -20.38 16 13 C 0.52 12.92 7.16 87.66 0.63 13.55 16 14 O -0.58 -18.74 15.98 -3.03 -0.05 -18.79 16 15 C -0.11 -1.82 2.68 -11.46 -0.03 -1.85 16 16 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 17 C -0.10 -1.38 4.46 30.62 0.14 -1.24 16 18 C -0.13 -0.79 6.08 30.67 0.19 -0.60 16 19 C 0.10 0.59 6.43 86.36 0.56 1.15 16 20 N -0.62 -8.62 2.97 -836.90 -2.49 -11.11 16 21 C 0.70 12.60 8.57 179.05 1.53 14.14 16 22 N -0.85 -6.81 8.79 -184.75 -1.62 -8.43 16 23 O -0.64 -18.61 16.61 -3.98 -0.07 -18.68 16 24 C 0.14 2.45 5.56 86.36 0.48 2.93 16 25 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 26 H 0.37 16.76 5.53 -92.71 -0.51 16.24 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 30 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.41 8.64 8.01 -92.71 -0.74 7.90 16 32 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 33 H 0.07 1.08 8.07 -2.38 -0.02 1.06 16 34 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.11 -0.07 5.57 -2.38 -0.01 -0.08 16 37 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.41 0.36 6.29 -92.71 -0.58 -0.22 16 39 H 0.42 2.81 8.93 -92.71 -0.83 1.98 16 40 H 0.09 1.79 6.63 -2.39 -0.02 1.78 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -82.68 333.53 -2.16 -84.83 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -1.64 Total: 23.27 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 5.89 Total: 22.30 kcal Atomic # 7 Polarization: -132.81 SS G_CDS: -8.19 Total: -141.00 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.11 Total: -37.46 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.90 Total: 48.06 kcal Total: -82.68 -2.16 -84.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131007928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.229 kcal (2) G-P(sol) polarization free energy of solvation -82.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds