Wall clock time and date at job start Tue Mar 31 2020 03:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46828 * 2 1 4 4 C 1.52996 * 109.47317 * 119.99956 * 2 1 3 5 5 C 1.52999 * 109.47469 * 175.00484 * 4 2 1 6 6 H 1.09000 * 109.47262 * 55.90665 * 5 4 2 7 7 O 1.42903 * 109.47102 * 295.90841 * 5 4 2 8 8 C 1.50697 * 109.47275 * 175.90901 * 5 4 2 9 9 O 1.21284 * 119.99923 * 108.44751 * 8 5 4 10 10 N 1.34770 * 119.99895 * 288.43594 * 8 5 4 11 11 C 1.47082 * 120.88115 * 184.32370 * 10 8 5 12 12 C 1.53694 * 108.27551 * 128.76189 * 11 10 8 13 13 N 1.46904 * 109.25977 * 54.08314 * 12 11 10 14 14 C 1.46894 * 111.00283 * 172.60636 * 13 12 11 15 15 C 1.50701 * 109.47414 * 294.30383 * 14 13 12 16 16 H 1.07998 * 119.99440 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00083 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99925 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99864 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47174 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46674 * 120.00289 * 19 17 15 22 22 H 1.48502 * 109.46987 * 239.99829 * 19 17 15 23 23 C 1.46900 * 111.26748 * 296.75767 * 13 12 11 24 24 C 1.47084 * 120.88285 * 4.61247 * 10 8 5 25 25 H 1.09004 * 109.47189 * 59.99999 * 1 2 3 26 26 H 1.08995 * 109.46520 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47248 * 299.99882 * 1 2 3 28 28 H 1.08997 * 109.47391 * 240.00868 * 2 1 3 29 29 H 1.08995 * 109.47102 * 300.00185 * 3 2 1 30 30 H 1.09001 * 109.47110 * 60.00033 * 3 2 1 31 31 H 1.09004 * 109.47022 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47195 * 295.00042 * 4 2 1 33 33 H 1.09002 * 109.47194 * 55.00322 * 4 2 1 34 34 H 0.96700 * 113.99928 * 300.00003 * 7 5 4 35 35 H 1.08994 * 109.62983 * 248.52931 * 11 10 8 36 36 H 1.08999 * 109.62676 * 9.11088 * 11 10 8 37 37 H 1.09010 * 109.64773 * 294.08083 * 12 11 10 38 38 H 1.08998 * 109.42484 * 173.95243 * 12 11 10 39 39 H 1.09007 * 109.46735 * 54.30330 * 14 13 12 40 40 H 1.08998 * 109.47292 * 174.29665 * 14 13 12 41 41 H 0.96999 * 119.99621 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.49319 * 303.14724 * 23 13 12 43 43 H 1.09001 * 109.51178 * 183.07330 * 23 13 12 44 44 H 1.09004 * 109.62786 * 350.88976 * 24 10 8 45 45 H 1.09001 * 109.62939 * 111.47145 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1880 6 1 3.9962 0.1630 1.0690 7 8 3.9394 -1.6488 0.0777 8 6 4.0755 -1.4507 2.4632 9 8 4.5110 -2.5826 2.4553 10 7 4.0484 -0.7470 3.6123 11 6 4.6274 -1.2964 4.8477 12 6 5.5845 -0.2490 5.4388 13 7 4.8693 1.0239 5.6012 14 6 5.6931 2.0022 6.3237 15 6 5.9168 1.5254 7.7357 16 1 5.4892 0.5894 8.0636 17 6 6.6672 2.2841 8.6088 18 7 7.1874 3.4241 8.2095 19 14 6.9437 1.6934 10.3593 20 1 6.2574 0.3914 10.5566 21 1 8.3994 1.5268 10.6012 22 1 6.3949 2.6923 11.3113 23 6 4.4324 1.5588 4.3047 24 6 3.4335 0.5880 3.6658 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.7517 -0.1583 2.1369 33 1 1.6055 -1.7198 1.2951 34 1 3.5899 -2.5495 0.1171 35 1 3.8317 -1.5130 5.5603 36 1 5.1773 -2.2095 4.6199 37 1 6.4320 -0.1070 4.7680 38 1 5.9421 -0.5917 6.4097 39 1 6.6539 2.1104 5.8203 40 1 5.1821 2.9647 6.3418 41 1 7.7150 3.9580 8.8239 42 1 5.2958 1.6755 3.6498 43 1 3.9545 2.5272 4.4528 44 1 3.1937 0.9214 2.6560 45 1 2.5251 0.5490 4.2670 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144173315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:19 Heat of formation + Delta-G solvation = -92.997068 kcal Electronic energy + Delta-G solvation = -23644.317540 eV Core-core repulsion = 20275.306196 eV Total energy + Delta-G solvation = -3369.011344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.49333 -38.10697 -37.17278 -35.39788 -34.44389 -32.46261 -31.18289 -29.73367 -28.12340 -27.44306 -25.76277 -24.53732 -23.17754 -22.05849 -20.66406 -20.36314 -18.97116 -17.65179 -16.82733 -16.39516 -16.12486 -15.42423 -14.96169 -14.78924 -14.51227 -14.39970 -14.17331 -13.97097 -13.77633 -13.58707 -12.90905 -12.85350 -12.51265 -12.30640 -12.19674 -12.04160 -11.95127 -11.41084 -11.32631 -11.22091 -11.12833 -10.91482 -10.86872 -10.77984 -10.69553 -10.61094 -10.52765 -9.92152 -9.44757 -9.26483 -8.56888 -8.47989 -7.38713 -6.09373 -4.11254 2.55015 3.00456 3.27387 3.35187 3.39539 4.06772 4.31108 4.36355 4.50052 4.57619 4.71503 4.76579 4.87825 5.10581 5.14707 5.23751 5.29560 5.37580 5.40138 5.41232 5.46269 5.57232 5.58581 5.65440 5.70299 5.74988 5.87028 5.90578 5.94549 6.04287 6.12924 6.13475 6.33604 6.48184 6.65743 7.16830 7.23121 7.30261 7.48829 7.71006 7.96127 8.07097 8.13954 8.43239 8.96233 9.53613 11.01492 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.003610 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.381658 B = 7754.465637 C = 8285.816798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.154 4.154 4 C -0.148 4.148 5 C 0.092 3.908 6 H 0.124 0.876 7 O -0.538 6.538 8 C 0.484 3.516 9 O -0.546 6.546 10 N -0.603 5.603 11 C 0.114 3.886 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.193 3.807 15 C -0.510 4.510 16 H 0.065 0.935 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.038 3.962 24 C 0.107 3.893 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.381 0.619 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.025 0.975 38 H 0.098 0.902 39 H -0.009 1.009 40 H 0.032 0.968 41 H 0.261 0.739 42 H 0.028 0.972 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.117 -5.488 -15.355 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.211 4.211 4 C -0.186 4.186 5 C 0.029 3.971 6 H 0.141 0.859 7 O -0.343 6.343 8 C 0.272 3.728 9 O -0.424 6.424 10 N -0.337 5.337 11 C -0.009 4.009 12 C -0.078 4.078 13 N -0.260 5.260 14 C 0.068 3.932 15 C -0.548 4.548 16 H 0.083 0.917 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.092 4.092 24 C -0.016 4.016 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.043 0.957 38 H 0.116 0.884 39 H 0.009 0.991 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.883 -5.484 -15.202 20.060 hybrid contribution 0.709 -0.327 0.828 1.138 sum -11.174 -5.811 -14.374 19.111 Atomic orbital electron populations 1.21845 0.95030 1.01701 1.01928 1.21046 0.95595 0.96419 0.98009 1.21950 1.01323 0.95753 1.02115 1.22430 0.93820 1.02333 0.99987 1.21933 0.95078 0.95636 0.84450 0.85910 1.86574 1.77934 1.27529 1.42260 1.21563 0.79091 0.86457 0.85729 1.90677 1.47549 1.18394 1.85754 1.48275 1.57625 1.18201 1.09590 1.21977 0.97371 0.97188 0.84331 1.22429 0.93671 0.90566 1.01116 1.62088 1.43312 1.04909 1.15690 1.19738 0.90123 0.90304 0.92992 1.21171 1.31341 1.06769 0.95527 0.91729 1.24994 0.95691 0.94934 0.98957 1.69966 1.34936 1.13006 1.35793 0.86438 0.77798 0.78855 0.84318 1.19605 1.21098 1.20975 1.22416 0.97256 0.97556 0.91931 1.22091 0.96906 0.81701 1.00902 0.92572 0.92791 0.92536 0.90300 0.92451 0.92344 0.92364 0.89804 0.90932 0.77004 0.90825 0.89475 0.95676 0.88427 0.99068 0.94988 0.92906 0.95410 0.89894 0.89989 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 2 C -0.09 -0.70 2.87 -90.62 -0.26 -0.96 16 3 C -0.15 -1.14 8.95 37.16 0.33 -0.80 16 4 C -0.15 -1.27 3.96 -26.73 -0.11 -1.37 16 5 C 0.09 1.01 2.39 -27.88 -0.07 0.95 16 6 H 0.12 1.30 5.49 -51.93 -0.29 1.02 16 7 O -0.54 -6.31 12.46 -54.87 -0.68 -7.00 16 8 C 0.48 7.06 7.06 -10.99 -0.08 6.98 16 9 O -0.55 -9.74 15.78 -14.09 -0.22 -9.96 16 10 N -0.60 -8.78 3.00 -172.18 -0.52 -9.29 16 11 C 0.11 1.83 6.61 -3.36 -0.02 1.81 16 12 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 13 N -0.53 -10.80 4.62 -235.46 -1.09 -11.89 16 14 C 0.19 4.82 4.72 -4.98 -0.02 4.80 16 15 C -0.51 -13.81 8.41 -34.44 -0.29 -14.10 16 16 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 19 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 24 C 0.11 1.35 5.28 -3.60 -0.02 1.33 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.65 7.66 -51.93 -0.40 0.25 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.46 6.48 -51.93 -0.34 0.12 16 32 H 0.08 0.70 5.91 -51.93 -0.31 0.39 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.38 3.64 8.72 45.56 0.40 4.04 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.43 7.09 -51.93 -0.37 1.06 16 37 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.10 1.98 6.67 -51.93 -0.35 1.63 16 39 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 40 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.27 7.99 -51.93 -0.41 0.85 16 44 H 0.08 0.80 4.86 -51.93 -0.25 0.55 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -31.55 349.83 -8.73 -40.28 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.88 Total: 0.80 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.33 Total: 0.98 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.87 Total: -46.56 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.91 Total: -16.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.55 -8.73 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144173315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.714 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds