Wall clock time and date at job start Tue Mar 31 2020 03:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46828 * 2 1 4 4 C 1.52996 * 109.47317 * 119.99956 * 2 1 3 5 5 C 1.52999 * 109.47469 * 175.00484 * 4 2 1 6 6 H 1.09000 * 109.47262 * 55.90665 * 5 4 2 7 7 O 1.42903 * 109.47102 * 295.90841 * 5 4 2 8 8 C 1.50697 * 109.47275 * 175.90901 * 5 4 2 9 9 O 1.21284 * 119.99923 * 108.44751 * 8 5 4 10 10 N 1.34770 * 119.99895 * 288.43594 * 8 5 4 11 11 C 1.47082 * 120.88115 * 184.32370 * 10 8 5 12 12 C 1.53694 * 108.27551 * 128.76189 * 11 10 8 13 13 N 1.46904 * 109.25977 * 54.08314 * 12 11 10 14 14 C 1.46894 * 111.00283 * 172.60636 * 13 12 11 15 15 C 1.50701 * 109.47414 * 294.30383 * 14 13 12 16 16 H 1.07998 * 119.99440 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00083 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99925 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99864 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47174 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46674 * 120.00289 * 19 17 15 22 22 H 1.48502 * 109.46987 * 239.99829 * 19 17 15 23 23 C 1.46900 * 111.26748 * 296.75767 * 13 12 11 24 24 C 1.47084 * 120.88285 * 4.61247 * 10 8 5 25 25 H 1.09004 * 109.47189 * 59.99999 * 1 2 3 26 26 H 1.08995 * 109.46520 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47248 * 299.99882 * 1 2 3 28 28 H 1.08997 * 109.47391 * 240.00868 * 2 1 3 29 29 H 1.08995 * 109.47102 * 300.00185 * 3 2 1 30 30 H 1.09001 * 109.47110 * 60.00033 * 3 2 1 31 31 H 1.09004 * 109.47022 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47195 * 295.00042 * 4 2 1 33 33 H 1.09002 * 109.47194 * 55.00322 * 4 2 1 34 34 H 0.96700 * 113.99928 * 300.00003 * 7 5 4 35 35 H 1.08994 * 109.62983 * 248.52931 * 11 10 8 36 36 H 1.08999 * 109.62676 * 9.11088 * 11 10 8 37 37 H 1.09010 * 109.64773 * 294.08083 * 12 11 10 38 38 H 1.08998 * 109.42484 * 173.95243 * 12 11 10 39 39 H 1.09007 * 109.46735 * 54.30330 * 14 13 12 40 40 H 1.08998 * 109.47292 * 174.29665 * 14 13 12 41 41 H 0.96999 * 119.99621 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.49319 * 303.14724 * 23 13 12 43 43 H 1.09001 * 109.51178 * 183.07330 * 23 13 12 44 44 H 1.09004 * 109.62786 * 350.88976 * 24 10 8 45 45 H 1.09001 * 109.62939 * 111.47145 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1880 6 1 3.9962 0.1630 1.0690 7 8 3.9394 -1.6488 0.0777 8 6 4.0755 -1.4507 2.4632 9 8 4.5110 -2.5826 2.4553 10 7 4.0484 -0.7470 3.6123 11 6 4.6274 -1.2964 4.8477 12 6 5.5845 -0.2490 5.4388 13 7 4.8693 1.0239 5.6012 14 6 5.6931 2.0022 6.3237 15 6 5.9168 1.5254 7.7357 16 1 5.4892 0.5894 8.0636 17 6 6.6672 2.2841 8.6088 18 7 7.1874 3.4241 8.2095 19 14 6.9437 1.6934 10.3593 20 1 6.2574 0.3914 10.5566 21 1 8.3994 1.5268 10.6012 22 1 6.3949 2.6923 11.3113 23 6 4.4324 1.5588 4.3047 24 6 3.4335 0.5880 3.6658 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.7517 -0.1583 2.1369 33 1 1.6055 -1.7198 1.2951 34 1 3.5899 -2.5495 0.1171 35 1 3.8317 -1.5130 5.5603 36 1 5.1773 -2.2095 4.6199 37 1 6.4320 -0.1070 4.7680 38 1 5.9421 -0.5917 6.4097 39 1 6.6539 2.1104 5.8203 40 1 5.1821 2.9647 6.3418 41 1 7.7150 3.9580 8.8239 42 1 5.2958 1.6755 3.6498 43 1 3.9545 2.5272 4.4528 44 1 3.1937 0.9214 2.6560 45 1 2.5251 0.5490 4.2670 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144173315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:18 Heat of formation + Delta-G solvation = -115.167956 kcal Electronic energy + Delta-G solvation = -23645.278941 eV Core-core repulsion = 20275.306196 eV Total energy + Delta-G solvation = -3369.972745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62841 -39.36422 -38.21374 -36.36301 -35.79027 -34.41591 -32.44008 -30.84436 -29.64913 -27.97636 -27.36108 -25.61339 -24.48691 -23.76975 -22.02966 -21.05506 -20.13073 -18.78024 -18.50813 -17.81806 -17.05886 -16.73203 -16.45070 -16.02348 -15.86047 -15.51493 -15.44960 -15.19833 -14.96177 -14.66219 -14.25926 -14.04324 -13.59839 -13.56591 -13.15801 -13.06611 -12.93486 -12.78324 -12.64538 -12.56889 -12.37918 -12.35966 -12.20635 -12.06068 -11.86234 -11.72590 -11.48589 -11.39020 -11.25799 -10.63629 -10.48274 -9.83468 -9.08291 -8.21716 -6.31305 1.41065 1.41472 1.42358 1.55263 1.85326 2.39887 3.10462 3.16100 3.22345 3.38551 3.77394 3.89451 3.92557 4.00088 4.07711 4.18904 4.20943 4.23756 4.39661 4.47797 4.54385 4.66980 4.78076 4.81666 4.84386 4.90016 4.90996 4.97235 4.98893 5.11011 5.14209 5.15269 5.21755 5.36766 5.39056 5.50236 5.57120 5.63388 6.02118 6.16079 6.31563 6.56014 6.58041 6.84479 6.98334 7.38628 8.89567 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.003610 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.381658 B = 7754.465637 C = 8285.816798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.157 4.157 4 C -0.140 4.140 5 C 0.100 3.900 6 H 0.131 0.869 7 O -0.549 6.549 8 C 0.482 3.518 9 O -0.581 6.581 10 N -0.605 5.605 11 C 0.124 3.876 12 C 0.057 3.943 13 N -0.537 5.537 14 C 0.208 3.792 15 C -0.522 4.522 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.278 1.278 23 C 0.033 3.967 24 C 0.116 3.884 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.390 0.610 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.009 0.991 38 H 0.079 0.921 39 H -0.042 1.042 40 H 0.013 0.987 41 H 0.264 0.736 42 H 0.020 0.980 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 -5.861 -15.733 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.215 4.215 4 C -0.178 4.178 5 C 0.038 3.962 6 H 0.149 0.851 7 O -0.355 6.355 8 C 0.271 3.729 9 O -0.462 6.462 10 N -0.339 5.339 11 C 0.002 3.998 12 C -0.072 4.072 13 N -0.261 5.261 14 C 0.082 3.918 15 C -0.561 4.561 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.186 1.186 21 H -0.208 1.208 22 H -0.204 1.204 23 C -0.096 4.096 24 C -0.006 4.006 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.240 0.760 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.027 0.973 38 H 0.098 0.902 39 H -0.024 1.024 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.111 0.889 44 H 0.135 0.865 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.727 -5.862 -15.604 21.593 hybrid contribution 1.288 -0.206 0.872 1.569 sum -12.438 -6.069 -14.732 20.213 Atomic orbital electron populations 1.21829 0.94154 1.01986 1.02385 1.21000 0.96227 0.96297 0.97074 1.21987 1.00940 0.95702 1.02823 1.22402 0.91594 1.02913 1.00890 1.21999 0.96713 0.95297 0.82235 0.85147 1.86553 1.78385 1.28320 1.42242 1.22272 0.78175 0.86004 0.86468 1.90659 1.49108 1.20133 1.86302 1.48354 1.57496 1.18873 1.09148 1.21735 0.96997 0.95823 0.85294 1.22344 0.94023 0.90828 1.00045 1.62008 1.41820 1.04305 1.18005 1.19389 0.88974 0.90687 0.92798 1.21494 1.31228 1.06749 0.96600 0.91658 1.25885 0.95375 0.94996 1.03319 1.70086 1.35736 1.14249 1.37388 0.85361 0.77708 0.78692 0.79025 1.18612 1.20792 1.20354 1.22588 0.97914 0.99182 0.89914 1.22192 0.95819 0.79708 1.02855 0.92063 0.92630 0.92170 0.90948 0.91961 0.91562 0.92976 0.88981 0.90652 0.76000 0.89811 0.89840 0.97300 0.90243 1.02411 0.96875 0.92711 0.96199 0.88874 0.86454 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.19 71.98 0.66 -0.88 16 2 C -0.09 -1.08 2.87 -10.79 -0.03 -1.11 16 3 C -0.16 -1.88 8.95 71.99 0.64 -1.24 16 4 C -0.14 -1.99 3.96 30.59 0.12 -1.87 16 5 C 0.10 1.99 2.39 29.85 0.07 2.06 16 6 H 0.13 2.43 5.49 -2.39 -0.01 2.41 16 7 O -0.55 -11.97 12.46 -130.20 -1.62 -13.59 16 8 C 0.48 13.29 7.06 87.66 0.62 13.91 16 9 O -0.58 -20.30 15.78 15.74 0.25 -20.06 16 10 N -0.61 -16.62 3.00 -817.04 -2.45 -19.07 16 11 C 0.12 3.93 6.61 86.50 0.57 4.50 16 12 C 0.06 2.18 5.47 86.54 0.47 2.66 16 13 N -0.54 -21.76 4.62 -898.86 -4.15 -25.91 16 14 C 0.21 10.68 4.72 85.56 0.40 11.08 16 15 C -0.52 -28.76 8.41 25.60 0.22 -28.54 16 16 H 0.07 3.51 7.13 -2.91 -0.02 3.49 16 17 C 0.00 0.13 5.46 84.65 0.46 0.59 16 18 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 19 Si 0.97 43.56 29.54 68.60 2.03 45.59 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 C 0.03 1.03 5.62 86.38 0.49 1.52 16 24 C 0.12 2.63 5.28 86.35 0.46 3.09 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.69 6.48 -2.39 -0.02 0.67 16 32 H 0.09 1.18 5.91 -2.39 -0.01 1.17 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.39 6.92 8.72 -74.06 -0.65 6.28 16 35 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.08 2.72 7.09 -2.39 -0.02 2.71 16 37 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 38 H 0.08 3.31 6.67 -2.39 -0.02 3.29 16 39 H -0.04 -2.39 8.12 -2.38 -0.02 -2.41 16 40 H 0.01 0.72 7.97 -2.39 -0.02 0.70 16 41 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.09 2.73 7.99 -2.39 -0.02 2.71 16 44 H 0.12 1.86 4.86 -2.38 -0.01 1.85 16 45 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -68.70 349.83 -0.19 -68.88 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.33 Total: 13.41 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.16 Total: 5.77 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -6.32 Total: -100.01 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.37 Total: -33.65 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.70 -0.19 -68.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144173315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.285 kcal (2) G-P(sol) polarization free energy of solvation -68.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds