Wall clock time and date at job start Tue Mar 31 2020 03:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 C 1.53001 * 109.47060 * 120.00069 * 2 1 3 5 5 H 1.08997 * 109.49677 * 59.97013 * 4 2 1 6 6 C 1.53092 * 109.48042 * 179.97438 * 4 2 1 7 7 C 1.53177 * 109.16538 * 177.58727 * 6 4 2 8 8 H 1.09002 * 109.54433 * 183.05974 * 7 6 4 9 9 C 1.50700 * 109.54051 * 62.88623 * 7 6 4 10 10 O 1.21283 * 120.00275 * 359.97438 * 9 7 6 11 11 N 1.34777 * 120.00075 * 179.97438 * 9 7 6 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47198 * 180.02562 * 12 11 9 14 14 N 1.46499 * 109.47198 * 179.97438 * 13 12 11 15 15 C 1.36939 * 119.99933 * 180.27608 * 14 13 12 16 16 H 1.08001 * 119.99700 * 359.72658 * 15 14 13 17 17 C 1.38810 * 120.00095 * 179.71972 * 15 14 13 18 18 N 1.31624 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47173 * 60.00435 * 19 17 15 21 21 H 1.48497 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47132 * 300.00314 * 19 17 15 23 23 C 1.53174 * 109.03814 * 303.01995 * 7 6 4 24 24 C 1.53101 * 109.16341 * 56.98028 * 23 7 6 25 25 O 1.42903 * 109.41155 * 302.39060 * 24 23 7 26 26 H 1.09006 * 109.47083 * 300.00072 * 1 2 3 27 27 H 1.08994 * 109.47525 * 59.99846 * 1 2 3 28 28 H 1.09001 * 109.47523 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46759 * 239.99932 * 2 1 3 30 30 H 1.09000 * 109.46632 * 299.99875 * 3 2 1 31 31 H 1.09006 * 109.47182 * 59.99989 * 3 2 1 32 32 H 1.09002 * 109.46976 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.52254 * 57.68515 * 6 4 2 34 34 H 1.09000 * 109.57137 * 297.52634 * 6 4 2 35 35 H 0.97000 * 119.99549 * 0.02562 * 11 9 7 36 36 H 1.08995 * 109.47424 * 60.00473 * 12 11 9 37 37 H 1.09006 * 109.46868 * 300.00024 * 12 11 9 38 38 H 1.09009 * 109.46730 * 59.99787 * 13 12 11 39 39 H 1.08998 * 109.46846 * 300.00332 * 13 12 11 40 40 H 0.97001 * 119.99790 * 359.97438 * 14 13 12 41 41 H 0.96998 * 119.99409 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.52487 * 176.87913 * 23 7 6 43 43 H 1.09000 * 109.52608 * 297.07301 * 23 7 6 44 44 H 1.08997 * 109.48002 * 182.41031 * 24 23 7 45 45 H 1.09000 * 109.48836 * 62.37820 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6765 -1.7488 1.2499 6 6 3.5709 -0.7220 1.2492 7 6 4.0736 -1.3921 2.5316 8 1 5.1622 -1.3475 2.5637 9 6 3.6270 -2.8312 2.5567 10 8 2.9707 -3.2786 1.6402 11 7 3.9569 -3.6211 3.5977 12 6 3.5233 -5.0202 3.6219 13 6 4.0261 -5.6879 4.9034 14 7 3.5919 -7.0869 4.9279 15 6 3.9218 -7.8877 5.9886 16 1 4.5058 -7.4892 6.8050 17 6 3.5055 -9.2117 6.0145 18 7 2.7941 -9.6974 5.0193 19 14 3.9561 -10.3043 7.4611 20 1 3.3965 -9.7278 8.7100 21 1 3.3962 -11.6631 7.2484 22 1 5.4343 -10.3906 7.5746 23 6 3.4927 -0.6541 3.7416 24 6 1.9647 -0.6561 3.6455 25 8 1.5654 -0.0466 2.4162 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 3.9357 0.3044 1.2075 34 1 3.9357 -1.2737 0.3828 35 1 4.4815 -3.2631 4.3309 36 1 3.9309 -5.5419 2.7561 37 1 2.4345 -5.0636 3.5930 38 1 3.6181 -5.1660 5.7692 39 1 5.1148 -5.6444 4.9327 40 1 3.0670 -7.4447 4.1948 41 1 2.5035 -10.6227 5.0373 42 1 3.8006 -1.1580 4.6578 43 1 3.8558 0.3736 3.7504 44 1 1.5472 -0.0953 4.4817 45 1 1.5996 -1.6826 3.6778 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146801042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:56 Heat of formation + Delta-G solvation = -93.007036 kcal Electronic energy + Delta-G solvation = -23150.849783 eV Core-core repulsion = 19781.838007 eV Total energy + Delta-G solvation = -3369.011776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81712 -38.57423 -35.73849 -35.41849 -34.01128 -33.67492 -31.21797 -30.17973 -27.97182 -27.27825 -25.65550 -23.90732 -23.56691 -22.09549 -21.44714 -20.18556 -19.45227 -17.32964 -16.76441 -16.58581 -16.12054 -15.64930 -15.38267 -15.00353 -14.63008 -14.31199 -14.13530 -14.07699 -13.67703 -13.40815 -13.20399 -12.95539 -12.72561 -12.54423 -12.27429 -12.05876 -11.81487 -11.61472 -11.44131 -11.13211 -11.02821 -10.88403 -10.85271 -10.81827 -10.68843 -10.37239 -10.16967 -9.87236 -9.72516 -9.27627 -9.00130 -8.84700 -7.02405 -5.81891 -3.12928 2.65319 3.21727 3.40982 3.45416 3.46801 3.69321 4.34703 4.49311 4.56670 4.58001 4.70365 4.81129 4.94777 4.99209 5.10852 5.22413 5.38409 5.41755 5.47204 5.50065 5.54126 5.56327 5.62557 5.69371 5.70247 5.74039 5.80140 5.81183 5.85779 5.92595 5.99315 6.03871 6.12990 6.24001 6.30046 6.46481 6.66454 6.70908 7.18799 7.56867 7.62778 8.27671 8.35805 9.46823 10.01312 10.36003 11.40614 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.035143 B = 0.002845 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.563086 B = 9839.379442 C =10083.875106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.145 4.145 4 C 0.084 3.916 5 H 0.086 0.914 6 C -0.129 4.129 7 C -0.113 4.113 8 H 0.100 0.900 9 C 0.512 3.488 10 O -0.537 6.537 11 N -0.722 5.722 12 C 0.110 3.890 13 C 0.145 3.855 14 N -0.729 5.729 15 C -0.246 4.246 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C -0.146 4.146 24 C 0.059 3.941 25 O -0.376 6.376 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.399 0.601 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.109 23.920 -6.910 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.202 4.202 4 C 0.027 3.973 5 H 0.103 0.897 6 C -0.167 4.167 7 C -0.134 4.134 8 H 0.118 0.882 9 C 0.298 3.702 10 O -0.415 6.415 11 N -0.373 5.373 12 C -0.013 4.013 13 C 0.017 3.983 14 N -0.375 5.375 15 C -0.377 4.377 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.184 4.184 24 C -0.018 4.018 25 O -0.295 6.295 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.233 0.767 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.577 23.660 -7.432 24.807 hybrid contribution 0.648 -0.966 1.028 1.552 sum 1.225 22.694 -6.404 23.612 Atomic orbital electron populations 1.21759 0.94751 1.01859 1.01745 1.21127 0.96532 0.96582 0.96213 1.21833 1.00686 0.95901 1.01791 1.22405 0.92343 0.97332 0.85225 0.89666 1.22056 0.97210 1.00792 0.96646 1.21440 1.02174 0.92051 0.97737 0.88170 1.20565 0.79867 0.87772 0.82021 1.90664 1.38989 1.75608 1.36201 1.45981 1.55995 1.12287 1.23038 1.21582 1.00140 0.79692 0.99921 1.20749 0.96909 0.87341 0.93298 1.42185 1.65170 1.05174 1.24931 1.19142 1.28305 0.91888 0.98327 0.91095 1.24785 1.00483 0.97225 0.98296 1.69660 1.41280 1.15099 1.31836 0.86218 0.77929 0.79862 0.81848 1.21166 1.21582 1.21174 1.22193 0.97462 1.01620 0.97126 1.22535 0.93274 0.98618 0.87370 1.87866 1.74782 1.53614 1.13278 0.91931 0.93044 0.92785 0.90267 0.93181 0.91902 0.92765 0.90328 0.90269 0.76739 0.91301 0.91354 0.95871 0.95857 0.78004 0.93275 0.90326 0.89905 0.88691 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.05 37.16 0.34 -1.08 16 2 C -0.09 -0.86 2.81 -90.62 -0.25 -1.11 16 3 C -0.14 -1.23 8.70 37.16 0.32 -0.91 16 4 C 0.08 0.97 2.09 -26.68 -0.06 0.91 16 5 H 0.09 1.24 5.80 -51.93 -0.30 0.94 16 6 C -0.13 -1.30 4.27 -26.59 -0.11 -1.41 16 7 C -0.11 -1.10 3.04 -91.59 -0.28 -1.38 16 8 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 9 C 0.51 6.89 5.82 -10.98 -0.06 6.82 16 10 O -0.54 -9.23 13.84 5.55 0.08 -9.15 16 11 N -0.72 -9.44 5.44 -60.29 -0.33 -9.77 16 12 C 0.11 1.86 5.79 -4.04 -0.02 1.84 16 13 C 0.15 2.81 6.37 -4.04 -0.03 2.78 16 14 N -0.73 -18.49 5.60 -59.90 -0.34 -18.82 16 15 C -0.25 -6.84 9.99 -15.06 -0.15 -6.99 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 19 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.15 -1.21 5.57 -26.59 -0.15 -1.36 16 24 C 0.06 0.60 6.62 37.21 0.25 0.85 16 25 O -0.38 -4.38 9.06 -35.23 -0.32 -4.70 16 26 H 0.06 0.65 7.69 -51.93 -0.40 0.25 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.58 7.68 -51.93 -0.40 0.18 16 32 H 0.05 0.42 6.38 -51.93 -0.33 0.09 16 33 H 0.08 0.67 6.32 -51.92 -0.33 0.35 16 34 H 0.08 0.85 8.03 -51.93 -0.42 0.43 16 35 H 0.40 4.09 7.89 -40.82 -0.32 3.77 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.39 10.38 7.67 -40.82 -0.31 10.06 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.08 0.55 7.52 -51.93 -0.39 0.16 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.61 7.38 -51.93 -0.38 0.23 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -32.28 351.53 -7.99 -40.27 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.78 Total: 8.64 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.30 Total: -1.46 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.06 Total: -56.11 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.24 Total: -13.85 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.28 -7.99 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146801042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.734 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds