Wall clock time and date at job start Tue Mar 31 2020 03:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 C 1.53001 * 109.47060 * 120.00069 * 2 1 3 5 5 H 1.08997 * 109.49677 * 59.97013 * 4 2 1 6 6 C 1.53092 * 109.48042 * 179.97438 * 4 2 1 7 7 C 1.53177 * 109.16538 * 177.58727 * 6 4 2 8 8 H 1.09002 * 109.54433 * 183.05974 * 7 6 4 9 9 C 1.50700 * 109.54051 * 62.88623 * 7 6 4 10 10 O 1.21283 * 120.00275 * 359.97438 * 9 7 6 11 11 N 1.34777 * 120.00075 * 179.97438 * 9 7 6 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47198 * 180.02562 * 12 11 9 14 14 N 1.46499 * 109.47198 * 179.97438 * 13 12 11 15 15 C 1.36939 * 119.99933 * 180.27608 * 14 13 12 16 16 H 1.08001 * 119.99700 * 359.72658 * 15 14 13 17 17 C 1.38810 * 120.00095 * 179.71972 * 15 14 13 18 18 N 1.31624 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00044 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47173 * 60.00435 * 19 17 15 21 21 H 1.48497 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47132 * 300.00314 * 19 17 15 23 23 C 1.53174 * 109.03814 * 303.01995 * 7 6 4 24 24 C 1.53101 * 109.16341 * 56.98028 * 23 7 6 25 25 O 1.42903 * 109.41155 * 302.39060 * 24 23 7 26 26 H 1.09006 * 109.47083 * 300.00072 * 1 2 3 27 27 H 1.08994 * 109.47525 * 59.99846 * 1 2 3 28 28 H 1.09001 * 109.47523 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46759 * 239.99932 * 2 1 3 30 30 H 1.09000 * 109.46632 * 299.99875 * 3 2 1 31 31 H 1.09006 * 109.47182 * 59.99989 * 3 2 1 32 32 H 1.09002 * 109.46976 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.52254 * 57.68515 * 6 4 2 34 34 H 1.09000 * 109.57137 * 297.52634 * 6 4 2 35 35 H 0.97000 * 119.99549 * 0.02562 * 11 9 7 36 36 H 1.08995 * 109.47424 * 60.00473 * 12 11 9 37 37 H 1.09006 * 109.46868 * 300.00024 * 12 11 9 38 38 H 1.09009 * 109.46730 * 59.99787 * 13 12 11 39 39 H 1.08998 * 109.46846 * 300.00332 * 13 12 11 40 40 H 0.97001 * 119.99790 * 359.97438 * 14 13 12 41 41 H 0.96998 * 119.99409 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.52487 * 176.87913 * 23 7 6 43 43 H 1.09000 * 109.52608 * 297.07301 * 23 7 6 44 44 H 1.08997 * 109.48002 * 182.41031 * 24 23 7 45 45 H 1.09000 * 109.48836 * 62.37820 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6765 -1.7488 1.2499 6 6 3.5709 -0.7220 1.2492 7 6 4.0736 -1.3921 2.5316 8 1 5.1622 -1.3475 2.5637 9 6 3.6270 -2.8312 2.5567 10 8 2.9707 -3.2786 1.6402 11 7 3.9569 -3.6211 3.5977 12 6 3.5233 -5.0202 3.6219 13 6 4.0261 -5.6879 4.9034 14 7 3.5919 -7.0869 4.9279 15 6 3.9218 -7.8877 5.9886 16 1 4.5058 -7.4892 6.8050 17 6 3.5055 -9.2117 6.0145 18 7 2.7941 -9.6974 5.0193 19 14 3.9561 -10.3043 7.4611 20 1 3.3965 -9.7278 8.7100 21 1 3.3962 -11.6631 7.2484 22 1 5.4343 -10.3906 7.5746 23 6 3.4927 -0.6541 3.7416 24 6 1.9647 -0.6561 3.6455 25 8 1.5654 -0.0466 2.4162 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 3.9357 0.3044 1.2075 34 1 3.9357 -1.2737 0.3828 35 1 4.4815 -3.2631 4.3309 36 1 3.9309 -5.5419 2.7561 37 1 2.4345 -5.0636 3.5930 38 1 3.6181 -5.1660 5.7692 39 1 5.1148 -5.6444 4.9327 40 1 3.0670 -7.4447 4.1948 41 1 2.5035 -10.6227 5.0373 42 1 3.8006 -1.1580 4.6578 43 1 3.8558 0.3736 3.7504 44 1 1.5472 -0.0953 4.4817 45 1 1.5996 -1.6826 3.6778 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146801042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:55 Heat of formation + Delta-G solvation = -115.709206 kcal Electronic energy + Delta-G solvation = -23151.834223 eV Core-core repulsion = 19781.838007 eV Total energy + Delta-G solvation = -3369.996216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77847 -39.59793 -37.32694 -36.22475 -35.49864 -34.70358 -33.09319 -30.98552 -29.57645 -28.03307 -26.70368 -25.49312 -24.52603 -23.40228 -22.79851 -21.03117 -20.48635 -19.31807 -17.77989 -17.48556 -17.10831 -16.81712 -16.58736 -16.46338 -15.90120 -15.41768 -15.33674 -15.15824 -14.99173 -14.74655 -14.50387 -14.22170 -13.60626 -13.41262 -13.13181 -13.05070 -13.03097 -12.79029 -12.65935 -12.59501 -12.50665 -12.30407 -12.13439 -11.88724 -11.81214 -11.64002 -11.47532 -11.27588 -10.99399 -10.76264 -10.21354 -10.11347 -9.08858 -7.98415 -5.30218 1.47377 1.51175 1.57350 1.59088 2.08758 2.56923 2.87778 3.35726 3.52096 3.67950 3.80550 3.92673 3.98197 4.01413 4.13537 4.17406 4.18518 4.26059 4.32961 4.46033 4.55507 4.61023 4.71853 4.77574 4.83073 4.89871 4.91480 4.96523 4.98781 5.05575 5.08301 5.10633 5.12546 5.21583 5.26602 5.38092 5.46119 5.48400 5.55963 6.22155 6.33918 6.52535 7.22877 7.28266 7.99973 8.22816 9.25148 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.035143 B = 0.002845 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.563086 B = 9839.379442 C =10083.875106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.138 4.138 4 C 0.084 3.916 5 H 0.046 0.954 6 C -0.127 4.127 7 C -0.106 4.106 8 H 0.132 0.868 9 C 0.508 3.492 10 O -0.580 6.580 11 N -0.710 5.710 12 C 0.129 3.871 13 C 0.150 3.850 14 N -0.748 5.748 15 C -0.250 4.250 16 H 0.084 0.916 17 C -0.077 4.077 18 N -0.972 5.972 19 Si 0.980 3.020 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.274 1.274 23 C -0.138 4.138 24 C 0.051 3.949 25 O -0.384 6.384 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.416 0.584 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.373 0.627 41 H 0.253 0.747 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 26.255 -5.681 27.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.195 4.195 4 C 0.027 3.973 5 H 0.064 0.936 6 C -0.165 4.165 7 C -0.127 4.127 8 H 0.150 0.850 9 C 0.296 3.704 10 O -0.460 6.460 11 N -0.363 5.363 12 C 0.004 3.996 13 C 0.023 3.977 14 N -0.391 5.391 15 C -0.381 4.381 16 H 0.102 0.898 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.808 3.192 20 H -0.200 1.200 21 H -0.223 1.223 22 H -0.200 1.200 23 C -0.176 4.176 24 C -0.026 4.026 25 O -0.304 6.304 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.253 0.747 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.463 26.063 -6.166 26.896 hybrid contribution 0.038 -1.622 0.617 1.736 sum 2.501 24.441 -5.549 25.188 Atomic orbital electron populations 1.21739 0.95073 1.00956 1.02144 1.21171 0.96367 0.97707 0.95511 1.21770 1.01285 0.94377 1.02028 1.22305 0.93583 0.95490 0.85956 0.93583 1.22059 0.95870 1.02005 0.96565 1.21527 1.03965 0.88822 0.98379 0.85005 1.21376 0.78779 0.89249 0.81015 1.90664 1.40753 1.76692 1.37849 1.45787 1.56065 1.10567 1.23880 1.21105 0.98702 0.81727 0.98100 1.20844 0.97496 0.84675 0.94666 1.42438 1.65203 1.07430 1.24071 1.19621 1.27273 0.92344 0.98875 0.89848 1.25693 1.01149 0.98938 1.01172 1.69837 1.43172 1.15086 1.34096 0.85118 0.77973 0.77353 0.78731 1.20046 1.22330 1.20034 1.22209 0.95438 1.02996 0.96963 1.22694 0.95200 0.97253 0.87422 1.87855 1.75351 1.53462 1.13684 0.92652 0.91439 0.94356 0.90242 0.92045 0.92526 0.91692 0.87894 0.91214 0.74659 0.93079 0.93368 0.94484 0.94406 0.79547 0.93880 0.88535 0.87442 0.86868 0.96083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.05 71.98 0.65 -2.18 16 2 C -0.09 -1.74 2.81 -10.79 -0.03 -1.77 16 3 C -0.14 -2.07 8.70 71.98 0.63 -1.44 16 4 C 0.08 1.93 2.09 30.63 0.06 2.00 16 5 H 0.05 1.43 5.80 -2.39 -0.01 1.42 16 6 C -0.13 -2.34 4.27 30.68 0.13 -2.21 16 7 C -0.11 -1.80 3.04 -11.42 -0.03 -1.83 16 8 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 9 C 0.51 13.36 5.82 87.66 0.51 13.87 16 10 O -0.58 -20.63 13.84 -3.04 -0.04 -20.67 16 11 N -0.71 -17.78 5.44 -463.05 -2.52 -20.30 16 12 C 0.13 4.39 5.79 86.38 0.50 4.89 16 13 C 0.15 5.66 6.37 86.38 0.55 6.21 16 14 N -0.75 -38.15 5.60 -343.44 -1.92 -40.07 16 15 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 16 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 17 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 18 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 19 Si 0.98 45.62 29.55 68.60 2.03 47.65 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 C -0.14 -1.84 5.57 30.69 0.17 -1.67 16 24 C 0.05 0.98 6.62 72.02 0.48 1.46 16 25 O -0.38 -8.67 9.06 -148.98 -1.35 -10.02 16 26 H 0.05 1.17 7.69 -2.38 -0.02 1.15 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.93 7.68 -2.38 -0.02 0.91 16 32 H 0.06 0.83 6.38 -2.39 -0.02 0.81 16 33 H 0.10 1.42 6.32 -2.38 -0.02 1.40 16 34 H 0.07 1.42 8.03 -2.39 -0.02 1.40 16 35 H 0.42 7.43 7.89 -92.71 -0.73 6.70 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.37 20.67 7.67 -92.71 -0.71 19.96 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 42 H 0.10 0.97 7.52 -2.39 -0.02 0.95 16 43 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.02 0.52 7.38 -2.39 -0.02 0.50 16 Total: -1.00 -71.53 351.53 0.93 -70.60 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.46 Total: 32.31 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 4.92 Total: 0.40 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -4.16 Total: -120.27 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.39 Total: -30.69 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.53 0.93 -70.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146801042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.109 kcal (2) G-P(sol) polarization free energy of solvation -71.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds