Wall clock time and date at job start Tue Mar 31 2020 03:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 C 1.53009 * 109.46761 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.46582 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00657 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99556 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99691 * 180.02562 * 7 5 4 9 9 C 1.53009 * 109.46717 * 180.02562 * 8 7 5 10 10 H 1.09005 * 108.56545 * 57.94581 * 9 8 7 11 11 C 1.46923 * 108.61348 * 175.75169 * 9 8 7 12 12 N 1.50123 * 106.76762 * 177.92972 * 11 9 8 13 13 C 1.36929 * 120.63775 * 111.38508 * 12 11 9 14 14 H 1.08002 * 120.00197 * 155.68055 * 13 12 11 15 15 C 1.38812 * 120.00014 * 335.68484 * 13 12 11 16 16 N 1.31618 * 119.99894 * 340.61513 * 15 13 12 17 17 Si 1.86803 * 120.00347 * 160.62280 * 15 13 12 18 18 H 1.48497 * 109.47269 * 89.99054 * 17 15 13 19 19 H 1.48498 * 109.46930 * 209.99887 * 17 15 13 20 20 H 1.48502 * 109.46708 * 329.99087 * 17 15 13 21 21 C 1.43429 * 118.72886 * 291.35836 * 12 11 9 22 22 C 1.55330 * 116.23932 * 89.34882 * 21 12 11 23 23 C 1.55187 * 108.87605 * 319.46444 * 22 21 12 24 24 O 1.39646 * 110.56254 * 322.13846 * 23 22 21 25 25 H 1.08997 * 109.46781 * 300.00139 * 1 2 3 26 26 H 1.09000 * 109.46979 * 59.99653 * 1 2 3 27 27 H 1.08998 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46781 * 239.99861 * 2 1 3 29 29 H 1.08999 * 109.46489 * 120.00150 * 2 1 3 30 30 H 1.08997 * 109.47461 * 60.00278 * 3 2 1 31 31 H 1.09003 * 109.47032 * 299.99913 * 3 2 1 32 32 H 1.08997 * 109.46672 * 60.00081 * 4 3 2 33 33 H 1.08990 * 109.46926 * 300.00094 * 4 3 2 34 34 H 0.96994 * 120.00104 * 0.02562 * 7 5 4 35 35 H 1.08997 * 109.47373 * 60.00659 * 8 7 5 36 36 H 1.08999 * 109.47749 * 299.99814 * 8 7 5 37 37 H 1.09000 * 109.99743 * 297.24120 * 11 9 8 38 38 H 1.08998 * 109.99214 * 58.61931 * 11 9 8 39 39 H 0.96999 * 120.00021 * 180.02562 * 16 15 13 40 40 H 1.08993 * 108.13256 * 211.11244 * 21 12 11 41 41 H 1.09004 * 108.12509 * 327.80767 * 21 12 11 42 42 H 1.08995 * 109.57322 * 199.64445 * 22 21 12 43 43 H 1.09004 * 109.56958 * 79.28069 * 22 21 12 44 44 H 1.09002 * 109.25881 * 201.86376 * 23 22 21 45 45 H 1.08997 * 109.25993 * 82.42167 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7851 -0.0004 7 7 5.3975 3.1095 0.0009 8 6 5.8858 4.4907 0.0009 9 6 7.4159 4.4906 0.0014 10 1 7.7632 3.9421 -0.8742 11 6 7.8849 5.8791 -0.1018 12 7 9.3845 5.8350 -0.0459 13 6 10.1334 6.1483 -1.1486 14 1 11.1489 6.4965 -1.0306 15 6 9.5873 6.0185 -2.4182 16 7 8.5295 5.2580 -2.6050 17 14 10.3538 6.9231 -3.8617 18 1 11.3899 6.0648 -4.4901 19 1 9.3024 7.2420 -4.8607 20 1 10.9784 8.1820 -3.3816 21 6 10.0178 5.4589 1.1848 22 6 10.2822 3.9415 1.3854 23 6 9.0561 3.1451 0.8650 24 8 7.8700 3.8162 1.1701 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 6.0278 2.3722 0.0016 35 1 5.5219 5.0048 0.8905 36 1 5.5232 5.0043 -0.8895 37 1 7.5599 6.3131 -1.0474 38 1 7.4982 6.4660 0.7313 39 1 8.1481 5.1670 -3.4922 40 1 10.9725 5.9808 1.2483 41 1 9.3908 5.8025 2.0076 42 1 10.4297 3.7335 2.4451 43 1 11.1714 3.6489 0.8269 44 1 9.0423 2.1604 1.3323 45 1 9.1355 3.0285 -0.2158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149189328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:23 Heat of formation + Delta-G solvation = -74.946676 kcal Electronic energy + Delta-G solvation = -23489.516990 eV Core-core repulsion = 20121.288370 eV Total energy + Delta-G solvation = -3368.228620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.61963 -38.74077 -35.50409 -35.00280 -34.40621 -32.20459 -31.29515 -30.45672 -28.57386 -25.88690 -25.33522 -24.14470 -22.45258 -21.15508 -20.79129 -19.85562 -19.57902 -17.14510 -16.68017 -16.14863 -15.87734 -15.49204 -14.91240 -14.68385 -14.39452 -14.12038 -13.89540 -13.77188 -13.28975 -13.07017 -12.95034 -12.48591 -12.37916 -12.17422 -11.94606 -11.45135 -11.37497 -11.28038 -11.20494 -11.10129 -10.84772 -10.74143 -10.67083 -10.50746 -10.17273 -9.98019 -9.71003 -9.56027 -9.48018 -8.80596 -8.62662 -8.50856 -6.83169 -5.93626 -3.31939 2.95938 3.31720 3.40223 3.42797 3.56290 4.42470 4.68671 4.77902 4.84114 4.84345 5.19187 5.22730 5.23737 5.27271 5.41921 5.59656 5.69483 5.70866 5.76714 5.80357 5.81074 5.91768 5.99719 6.02344 6.14605 6.16854 6.29419 6.32650 6.41163 6.47680 6.59144 6.66080 6.70615 6.80980 6.93192 6.96428 7.11460 7.31805 7.70586 7.88248 8.13030 8.30901 8.56502 9.05690 9.74005 10.28398 11.15524 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020744 B = 0.003835 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.440262 B = 7299.491524 C = 8119.459174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.141 4.141 5 C 0.506 3.494 6 O -0.552 6.552 7 N -0.716 5.716 8 C 0.121 3.879 9 C 0.060 3.940 10 H 0.107 0.893 11 C 0.143 3.857 12 N -0.588 5.588 13 C -0.249 4.249 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.907 5.907 17 Si 0.904 3.096 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.161 3.839 22 C -0.172 4.172 23 C 0.067 3.933 24 O -0.370 6.370 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.400 0.600 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.019 0.981 39 H 0.255 0.745 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 -9.987 5.090 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.181 4.181 5 C 0.292 3.708 6 O -0.431 6.431 7 N -0.366 5.366 8 C -0.004 4.004 9 C 0.002 3.998 10 H 0.124 0.876 11 C 0.018 3.982 12 N -0.308 5.308 13 C -0.378 4.378 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.553 5.553 17 Si 0.733 3.267 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.206 1.206 21 C 0.032 3.968 22 C -0.214 4.214 23 C -0.011 4.011 24 O -0.288 6.288 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.543 -9.281 5.110 13.610 hybrid contribution 1.004 -0.085 -1.025 1.438 sum -7.539 -9.367 4.086 12.699 Atomic orbital electron populations 1.21762 0.95869 1.01336 1.02005 1.21557 0.95984 0.96847 1.01907 1.21359 0.93009 0.96271 1.03559 1.21689 0.97880 0.94413 1.04148 1.20676 0.82424 0.91496 0.76157 1.90672 1.55428 1.46624 1.50331 1.45981 1.06682 1.09691 1.74249 1.21676 0.94701 0.82168 1.01818 1.22192 0.90483 0.98650 0.88514 0.87554 1.20752 0.83462 0.93197 1.00771 1.44116 1.01004 1.76963 1.08738 1.19249 0.97540 1.36775 0.84232 0.91327 1.24899 0.98638 0.98696 0.97362 1.69864 1.25239 1.38381 1.21812 0.86277 0.78256 0.79910 0.82218 1.21538 1.21512 1.20578 1.20373 0.96069 0.91375 0.89019 1.23586 0.97955 1.00809 0.99005 1.22343 0.85276 0.93212 1.00232 1.87516 1.39106 1.66834 1.35363 0.92706 0.92683 0.92934 0.92028 0.92065 0.91316 0.91256 0.89140 0.89180 0.76667 0.92135 0.90515 0.87824 0.96271 0.93477 0.94871 0.95035 0.93188 0.92507 0.93134 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.13 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.10 -1.14 4.50 -26.73 -0.12 -1.26 16 4 C -0.14 -1.57 5.70 -27.88 -0.16 -1.73 16 5 C 0.51 7.99 7.83 -10.99 -0.09 7.90 16 6 O -0.55 -10.80 15.98 5.56 0.09 -10.71 16 7 N -0.72 -11.45 5.43 -60.29 -0.33 -11.78 16 8 C 0.12 2.25 5.24 -4.04 -0.02 2.23 16 9 C 0.06 1.22 1.95 -29.64 -0.06 1.16 16 10 H 0.11 2.42 5.24 -51.93 -0.27 2.14 16 11 C 0.14 3.25 4.71 -4.93 -0.02 3.22 16 12 N -0.59 -14.08 2.61 -174.49 -0.46 -14.54 16 13 C -0.25 -6.46 9.62 -15.06 -0.14 -6.60 16 14 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 15 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 16 N -0.91 -23.62 9.57 55.49 0.53 -23.09 16 17 Si 0.90 20.81 29.60 -169.99 -5.03 15.78 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.16 3.39 5.33 -4.43 -0.02 3.36 16 22 C -0.17 -3.20 6.75 -24.34 -0.16 -3.36 16 23 C 0.07 1.24 6.38 38.32 0.24 1.49 16 24 O -0.37 -7.20 9.53 -31.95 -0.30 -7.51 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.83 8.10 -51.93 -0.42 0.40 16 31 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.40 5.67 8.32 -40.82 -0.34 5.33 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.10 2.58 6.02 -51.93 -0.31 2.27 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.03 0.69 7.96 -51.93 -0.41 0.27 16 41 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.30 6.66 -51.93 -0.35 0.95 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -28.46 353.23 -8.59 -37.05 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.98 Total: 5.17 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.43 Total: 4.30 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.25 Total: -49.41 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.22 Total: -18.22 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.46 -8.59 -37.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149189328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.895 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds