Wall clock time and date at job start Tue Mar 31 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 C 1.53009 * 109.46761 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.46582 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00657 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99556 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99691 * 180.02562 * 7 5 4 9 9 C 1.53009 * 109.46717 * 180.02562 * 8 7 5 10 10 H 1.09005 * 108.56545 * 57.94581 * 9 8 7 11 11 C 1.46923 * 108.61348 * 175.75169 * 9 8 7 12 12 N 1.50123 * 106.76762 * 177.92972 * 11 9 8 13 13 C 1.36929 * 120.63775 * 111.38508 * 12 11 9 14 14 H 1.08002 * 120.00197 * 155.68055 * 13 12 11 15 15 C 1.38812 * 120.00014 * 335.68484 * 13 12 11 16 16 N 1.31618 * 119.99894 * 340.61513 * 15 13 12 17 17 Si 1.86803 * 120.00347 * 160.62280 * 15 13 12 18 18 H 1.48497 * 109.47269 * 89.99054 * 17 15 13 19 19 H 1.48498 * 109.46930 * 209.99887 * 17 15 13 20 20 H 1.48502 * 109.46708 * 329.99087 * 17 15 13 21 21 C 1.43429 * 118.72886 * 291.35836 * 12 11 9 22 22 C 1.55330 * 116.23932 * 89.34882 * 21 12 11 23 23 C 1.55187 * 108.87605 * 319.46444 * 22 21 12 24 24 O 1.39646 * 110.56254 * 322.13846 * 23 22 21 25 25 H 1.08997 * 109.46781 * 300.00139 * 1 2 3 26 26 H 1.09000 * 109.46979 * 59.99653 * 1 2 3 27 27 H 1.08998 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46781 * 239.99861 * 2 1 3 29 29 H 1.08999 * 109.46489 * 120.00150 * 2 1 3 30 30 H 1.08997 * 109.47461 * 60.00278 * 3 2 1 31 31 H 1.09003 * 109.47032 * 299.99913 * 3 2 1 32 32 H 1.08997 * 109.46672 * 60.00081 * 4 3 2 33 33 H 1.08990 * 109.46926 * 300.00094 * 4 3 2 34 34 H 0.96994 * 120.00104 * 0.02562 * 7 5 4 35 35 H 1.08997 * 109.47373 * 60.00659 * 8 7 5 36 36 H 1.08999 * 109.47749 * 299.99814 * 8 7 5 37 37 H 1.09000 * 109.99743 * 297.24120 * 11 9 8 38 38 H 1.08998 * 109.99214 * 58.61931 * 11 9 8 39 39 H 0.96999 * 120.00021 * 180.02562 * 16 15 13 40 40 H 1.08993 * 108.13256 * 211.11244 * 21 12 11 41 41 H 1.09004 * 108.12509 * 327.80767 * 21 12 11 42 42 H 1.08995 * 109.57322 * 199.64445 * 22 21 12 43 43 H 1.09004 * 109.56958 * 79.28069 * 22 21 12 44 44 H 1.09002 * 109.25881 * 201.86376 * 23 22 21 45 45 H 1.08997 * 109.25993 * 82.42167 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7851 -0.0004 7 7 5.3975 3.1095 0.0009 8 6 5.8858 4.4907 0.0009 9 6 7.4159 4.4906 0.0014 10 1 7.7632 3.9421 -0.8742 11 6 7.8849 5.8791 -0.1018 12 7 9.3845 5.8350 -0.0459 13 6 10.1334 6.1483 -1.1486 14 1 11.1489 6.4965 -1.0306 15 6 9.5873 6.0185 -2.4182 16 7 8.5295 5.2580 -2.6050 17 14 10.3538 6.9231 -3.8617 18 1 11.3899 6.0648 -4.4901 19 1 9.3024 7.2420 -4.8607 20 1 10.9784 8.1820 -3.3816 21 6 10.0178 5.4589 1.1848 22 6 10.2822 3.9415 1.3854 23 6 9.0561 3.1451 0.8650 24 8 7.8700 3.8162 1.1701 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 6.0278 2.3722 0.0016 35 1 5.5219 5.0048 0.8905 36 1 5.5232 5.0043 -0.8895 37 1 7.5599 6.3131 -1.0474 38 1 7.4982 6.4660 0.7313 39 1 8.1481 5.1670 -3.4922 40 1 10.9725 5.9808 1.2483 41 1 9.3908 5.8025 2.0076 42 1 10.4297 3.7335 2.4451 43 1 11.1714 3.6489 0.8269 44 1 9.0423 2.1604 1.3323 45 1 9.1355 3.0285 -0.2158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149189328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:22 Heat of formation + Delta-G solvation = -92.119289 kcal Electronic energy + Delta-G solvation = -23490.261650 eV Core-core repulsion = 20121.288370 eV Total energy + Delta-G solvation = -3368.973280 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.05906 -40.22706 -36.81561 -36.36538 -35.80609 -33.85846 -33.00916 -31.45722 -30.17474 -27.35919 -27.07143 -25.33213 -24.00003 -22.40603 -21.96912 -21.33108 -21.07158 -18.94683 -17.98583 -17.71028 -17.02107 -16.88517 -16.61469 -16.21076 -15.66852 -15.62880 -15.50383 -14.84060 -14.60119 -14.40746 -14.27554 -14.08532 -13.62969 -13.47867 -13.28285 -13.20167 -12.93524 -12.61887 -12.51750 -12.31826 -12.16818 -12.05756 -11.92946 -11.83894 -11.77512 -11.42333 -11.38132 -11.19185 -10.87210 -10.56183 -10.26712 -10.03427 -8.72249 -7.90272 -5.30622 1.46579 1.51233 1.58426 1.71027 2.30173 2.52163 3.11608 3.27286 3.50317 3.82514 3.97375 4.08909 4.15814 4.27427 4.36777 4.40915 4.41442 4.50180 4.56570 4.67020 4.72575 4.77532 4.79489 4.81426 4.96979 4.97450 5.04088 5.08326 5.13765 5.18299 5.18871 5.30653 5.34107 5.40192 5.41657 5.45268 5.51066 5.55242 5.67833 6.35790 6.51930 6.63281 7.10116 7.31318 7.82543 8.35651 9.15757 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020744 B = 0.003835 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.440262 B = 7299.491524 C = 8119.459174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.103 4.103 4 C -0.131 4.131 5 C 0.501 3.499 6 O -0.595 6.595 7 N -0.711 5.711 8 C 0.132 3.868 9 C 0.081 3.919 10 H 0.086 0.914 11 C 0.144 3.856 12 N -0.602 5.602 13 C -0.264 4.264 14 H 0.063 0.937 15 C -0.037 4.037 16 N -0.917 5.917 17 Si 0.959 3.041 18 H -0.287 1.287 19 H -0.294 1.294 20 H -0.279 1.279 21 C 0.153 3.847 22 C -0.165 4.165 23 C 0.068 3.932 24 O -0.367 6.367 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.411 0.589 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.251 0.749 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.604 -12.009 5.855 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.141 4.141 4 C -0.170 4.170 5 C 0.290 3.710 6 O -0.476 6.476 7 N -0.361 5.361 8 C 0.007 3.993 9 C 0.022 3.978 10 H 0.103 0.897 11 C 0.019 3.981 12 N -0.323 5.323 13 C -0.393 4.393 14 H 0.081 0.919 15 C -0.233 4.233 16 N -0.563 5.563 17 Si 0.788 3.212 18 H -0.214 1.214 19 H -0.220 1.220 20 H -0.205 1.205 21 C 0.025 3.975 22 C -0.206 4.206 23 C -0.010 4.010 24 O -0.285 6.285 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.247 0.753 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.304 -11.336 5.897 15.239 hybrid contribution 0.957 0.581 -1.213 1.651 sum -7.348 -10.754 4.684 13.841 Atomic orbital electron populations 1.21786 0.95711 1.02114 1.01603 1.21523 0.96131 0.94981 1.03048 1.21341 0.93010 0.97786 1.01944 1.21739 0.97711 0.91097 1.06493 1.21573 0.81662 0.93155 0.74617 1.90655 1.56346 1.48478 1.52170 1.45905 1.07320 1.08751 1.74154 1.21319 0.93589 0.83803 1.00594 1.21731 0.91146 0.96885 0.88075 0.89660 1.20674 0.83274 0.94675 0.99451 1.44231 1.01331 1.77702 1.09076 1.19391 0.97632 1.37125 0.85193 0.91909 1.25478 0.99352 0.99360 0.99120 1.69991 1.25830 1.38760 1.21713 0.85418 0.77295 0.78831 0.79645 1.21358 1.21995 1.20495 1.20498 0.95784 0.93381 0.87807 1.23500 0.97873 0.98435 1.00804 1.22410 0.84759 0.94770 0.99058 1.87513 1.39583 1.66758 1.34691 0.93062 0.93247 0.91533 0.90978 0.90732 0.92853 0.93136 0.86833 0.86439 0.75340 0.92742 0.92433 0.90433 0.95937 0.93986 0.95060 0.94797 0.90299 0.92723 0.89387 0.94514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.12 -1.74 5.93 30.60 0.18 -1.56 16 3 C -0.10 -2.12 4.50 30.60 0.14 -1.99 16 4 C -0.13 -2.60 5.70 29.85 0.17 -2.43 16 5 C 0.50 15.43 7.83 87.65 0.69 16.11 16 6 O -0.60 -23.58 15.98 -3.03 -0.05 -23.63 16 7 N -0.71 -22.14 5.43 -463.05 -2.52 -24.65 16 8 C 0.13 5.00 5.24 86.38 0.45 5.45 16 9 C 0.08 3.28 1.95 28.71 0.06 3.33 16 10 H 0.09 3.91 5.24 -2.38 -0.01 3.90 16 11 C 0.14 6.65 4.71 83.79 0.39 7.05 16 12 N -0.60 -28.99 2.61 -705.97 -1.84 -30.84 16 13 C -0.26 -13.81 9.62 84.03 0.81 -13.00 16 14 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 15 C -0.04 -1.92 4.92 84.86 0.42 -1.50 16 16 N -0.92 -48.49 9.57 21.65 0.21 -48.29 16 17 Si 0.96 43.12 29.60 68.60 2.03 45.15 16 18 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 C 0.15 6.33 5.33 87.75 0.47 6.80 16 22 C -0.17 -5.77 6.75 32.14 0.22 -5.55 16 23 C 0.07 2.36 6.38 72.73 0.46 2.82 16 24 O -0.37 -13.72 9.53 -137.25 -1.31 -15.03 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 31 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 32 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.41 10.93 8.32 -92.71 -0.77 10.16 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.08 3.99 6.02 -2.39 -0.01 3.98 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 40 H 0.03 1.28 7.96 -2.39 -0.02 1.26 16 41 H 0.03 1.36 7.98 -2.38 -0.02 1.34 16 42 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.04 1.49 6.66 -2.39 -0.02 1.47 16 Total: -1.00 -61.74 353.23 1.87 -59.87 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.18 Total: 23.39 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 5.17 Total: 14.02 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -4.15 Total: -103.77 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.36 Total: -38.66 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -61.74 1.87 -59.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149189328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.253 kcal (2) G-P(sol) polarization free energy of solvation -61.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds