Wall clock time and date at job start Tue Mar 31 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99912 * 2 1 4 4 H 1.48506 * 109.47092 * 269.99725 * 3 2 1 5 5 H 1.48500 * 109.47370 * 29.99592 * 3 2 1 6 6 H 1.48507 * 109.47167 * 150.00099 * 3 2 1 7 7 C 1.38813 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99760 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99579 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99859 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47556 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47693 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00475 * 180.02562 * 12 11 10 14 14 O 1.21288 * 119.99910 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00457 * 180.02562 * 13 12 11 16 16 C 1.53040 * 109.46463 * 180.02562 * 15 13 12 17 17 C 1.53186 * 109.31499 * 181.38458 * 16 15 13 18 18 N 1.46930 * 108.89218 * 305.29441 * 17 16 15 19 19 C 1.34779 * 120.63119 * 233.67839 * 18 17 16 20 20 N 1.34773 * 119.99728 * 354.77299 * 19 18 17 21 21 O 1.21583 * 120.00179 * 174.77560 * 19 18 17 22 22 C 1.47203 * 118.55698 * 53.54313 * 18 17 16 23 23 C 1.53045 * 109.45673 * 300.07160 * 15 13 12 24 24 H 0.97004 * 119.99954 * 0.02562 * 1 2 3 25 25 H 0.97002 * 120.00431 * 0.02562 * 9 7 2 26 26 H 1.09007 * 109.46548 * 59.99927 * 10 9 7 27 27 H 1.09000 * 109.47324 * 300.00327 * 10 9 7 28 28 H 1.09008 * 109.47228 * 59.99830 * 11 10 9 29 29 H 1.09000 * 109.47116 * 300.00509 * 11 10 9 30 30 H 0.97002 * 119.99573 * 0.02562 * 12 11 10 31 31 H 1.09003 * 109.45785 * 60.02385 * 15 13 12 32 32 H 1.09006 * 109.49564 * 61.42967 * 16 15 13 33 33 H 1.09001 * 109.52391 * 301.35761 * 16 15 13 34 34 H 1.08998 * 109.58650 * 65.15252 * 17 16 15 35 35 H 1.08995 * 109.58957 * 185.43899 * 17 16 15 36 36 H 0.97009 * 120.00436 * 4.97354 * 20 19 18 37 37 H 0.97003 * 120.00066 * 184.96501 * 20 19 18 38 38 H 1.09000 * 109.53725 * 186.68070 * 22 18 17 39 39 H 1.08991 * 109.68291 * 66.36081 * 22 18 17 40 40 H 1.08997 * 109.49503 * 298.56064 * 23 15 13 41 41 H 1.08994 * 109.50263 * 58.66048 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 7 1.7962 -6.0884 0.0018 13 6 1.1224 -7.2556 0.0019 14 8 -0.0905 -7.2556 0.0010 15 6 1.8759 -8.5607 0.0031 16 6 0.8812 -9.7238 0.0024 17 6 1.6501 -11.0482 0.0385 18 7 2.6055 -11.0742 -1.0774 19 6 2.6147 -12.1016 -1.9497 20 7 1.8158 -13.1673 -1.7440 21 8 3.3438 -12.0670 -2.9221 22 6 3.5486 -9.9533 -1.2226 23 6 2.7579 -8.6414 -1.2450 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3880 -0.0002 26 1 2.6847 -3.7144 0.8906 27 1 2.6847 -3.7145 -0.8894 28 1 0.4368 -4.7621 -0.8886 29 1 0.4375 -4.7617 0.8913 30 1 2.7663 -6.0884 0.0021 31 1 2.5015 -8.6180 0.8939 32 1 0.2723 -9.6811 -0.9008 33 1 0.2371 -9.6529 0.8789 34 1 2.1885 -11.1324 0.9825 35 1 0.9516 -11.8791 -0.0591 36 1 1.1824 -13.1641 -1.0093 37 1 1.8740 -13.9376 -2.3308 38 1 4.1028 -10.0617 -2.1550 39 1 4.2436 -9.9472 -0.3830 40 1 2.1310 -8.6092 -2.1361 41 1 3.4504 -7.7998 -1.2562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150509389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:40 Heat of formation + Delta-G solvation = -58.769675 kcal Electronic energy + Delta-G solvation = -22080.708030 eV Core-core repulsion = 18609.640554 eV Total energy + Delta-G solvation = -3471.067476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.84257 -39.70346 -37.35806 -35.71003 -34.39840 -33.86790 -32.80671 -31.42576 -31.04413 -28.02359 -26.13335 -23.81756 -23.51543 -22.19568 -21.47861 -20.40638 -19.77363 -18.79641 -17.40078 -17.26758 -16.95999 -15.81250 -15.68563 -15.61393 -15.11362 -14.67618 -14.58905 -14.38323 -13.91352 -13.86186 -13.70833 -13.18692 -13.02972 -12.90531 -12.66221 -12.22701 -11.67495 -11.45845 -11.18456 -11.10970 -10.99831 -10.83378 -10.81711 -10.49947 -10.13797 -10.05086 -9.87742 -9.68105 -9.02084 -8.98566 -8.84948 -7.01532 -5.81381 -3.12245 2.40084 2.66365 2.85408 3.21532 3.41253 3.46288 3.48129 3.71617 4.23170 4.41903 4.48647 4.58226 4.62842 4.79754 4.92024 5.03052 5.16726 5.27362 5.38218 5.45906 5.48187 5.53469 5.57643 5.75102 5.77583 5.93278 5.95198 6.05217 6.12767 6.39542 6.46015 6.55336 6.67769 6.71584 7.47089 7.57816 7.64124 8.26234 8.27976 8.36275 9.47461 10.02094 10.36696 11.41176 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.042986 B = 0.002477 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.215937 B =11302.237308 C =11691.657929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.722 5.722 13 C 0.514 3.486 14 O -0.541 6.541 15 C -0.106 4.106 16 C -0.115 4.115 17 C 0.112 3.888 18 N -0.629 5.629 19 C 0.710 3.290 20 N -0.869 5.869 21 O -0.594 6.594 22 C 0.130 3.870 23 C -0.128 4.128 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.399 0.601 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.396 0.604 37 H 0.413 0.587 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.221 -26.946 1.600 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.373 5.373 13 C 0.299 3.701 14 O -0.418 6.418 15 C -0.127 4.127 16 C -0.154 4.154 17 C -0.012 4.012 18 N -0.367 5.367 19 C 0.410 3.590 20 N -0.439 5.439 21 O -0.472 6.472 22 C 0.007 3.993 23 C -0.167 4.167 24 H 0.067 0.933 25 H 0.220 0.780 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.233 0.767 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.227 0.773 37 H 0.245 0.755 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.008 -26.616 1.018 27.102 hybrid contribution 0.194 0.731 0.217 0.786 sum 5.202 -25.885 1.235 26.431 Atomic orbital electron populations 1.69668 1.05164 1.25869 1.57172 1.24789 0.95576 0.97856 1.02652 0.86145 0.78599 0.83563 0.77569 1.21604 1.21682 1.20695 1.19188 0.91033 0.83851 1.43460 0.91021 1.42194 1.06006 0.99586 1.89702 1.20754 0.93486 0.85705 0.98387 1.21581 0.95464 0.81785 1.02521 1.45953 1.10424 1.06051 1.74863 1.20498 0.88132 0.85273 0.76182 1.90715 1.13991 1.87659 1.49473 1.21314 0.97910 0.92983 1.00526 1.21736 0.97155 0.91895 1.04593 1.21702 0.91475 0.98277 0.89733 1.47352 1.38255 1.21925 1.29215 1.15842 0.80705 0.80203 0.82269 1.43173 1.43530 1.19611 1.37604 1.90964 1.45576 1.80790 1.29910 1.21544 0.90535 0.83454 1.03732 1.21967 0.98992 0.98120 0.97586 0.93345 0.78012 0.95830 0.95810 0.91330 0.91321 0.76687 0.88207 0.90518 0.89566 0.90875 0.90222 0.77336 0.75488 0.88339 0.91102 0.90597 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.44 5.60 -59.91 -0.34 -18.78 16 10 C 0.14 2.78 6.37 -4.04 -0.03 2.76 16 11 C 0.11 1.84 5.79 -4.05 -0.02 1.82 16 12 N -0.72 -9.16 5.44 -60.30 -0.33 -9.49 16 13 C 0.51 6.62 7.16 -10.99 -0.08 6.54 16 14 O -0.54 -9.31 15.98 5.55 0.09 -9.22 16 15 C -0.11 -0.88 2.49 -91.73 -0.23 -1.11 16 16 C -0.12 -0.90 4.65 -26.61 -0.12 -1.02 16 17 C 0.11 0.60 6.38 -3.71 -0.02 0.58 16 18 N -0.63 -4.93 2.98 -178.28 -0.53 -5.47 16 19 C 0.71 7.00 8.58 -86.92 -0.75 6.25 16 20 N -0.87 -4.95 8.78 27.63 0.24 -4.71 16 21 O -0.59 -8.49 16.62 5.29 0.09 -8.41 16 22 C 0.13 0.99 6.45 -3.55 -0.02 0.96 16 23 C -0.13 -0.99 5.27 -26.60 -0.14 -1.13 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.39 10.35 7.67 -40.82 -0.31 10.04 16 26 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.40 3.88 7.87 -40.82 -0.32 3.56 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.26 5.64 -51.93 -0.29 -0.03 16 36 H 0.40 1.19 6.32 -40.82 -0.26 0.94 16 37 H 0.41 1.92 8.93 -40.82 -0.36 1.56 16 38 H 0.10 0.91 7.01 -51.93 -0.36 0.54 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.55 7.52 -51.93 -0.39 0.16 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -36.80 336.40 -7.74 -44.54 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.07 Total: 8.50 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -1.66 Total: 8.25 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -0.23 Total: -65.94 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.18 Total: -17.63 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.80 -7.74 -44.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150509389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.233 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds