Wall clock time and date at job start Tue Mar 31 2020 03:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46983 * 2 1 4 4 C 1.50701 * 109.54225 * 62.82578 * 3 2 1 5 5 O 1.21280 * 119.99980 * 247.06815 * 4 3 2 6 6 N 1.34777 * 119.99907 * 67.07334 * 4 3 2 7 7 C 1.46498 * 120.00097 * 175.35516 * 6 4 3 8 8 C 1.53001 * 109.47049 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.46886 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.46974 * 179.97438 * 9 8 7 11 11 C 1.36939 * 119.99777 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99972 * 0.02562 * 11 10 9 13 13 C 1.38805 * 119.99806 * 180.02562 * 11 10 9 14 14 N 1.31621 * 120.00410 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00168 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47146 * 59.99762 * 15 13 11 17 17 H 1.48497 * 109.47278 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46929 * 300.00091 * 15 13 11 19 19 C 1.53173 * 109.54189 * 183.00559 * 3 2 1 20 20 C 1.53283 * 109.06369 * 176.85195 * 19 3 2 21 21 O 1.42898 * 109.45980 * 302.44360 * 20 19 3 22 22 C 1.42907 * 114.09801 * 61.15405 * 21 20 19 23 23 C 1.53086 * 109.41866 * 298.84629 * 22 21 20 24 24 H 1.08995 * 109.46970 * 176.55569 * 1 2 3 25 25 H 1.08998 * 109.46689 * 296.55415 * 1 2 3 26 26 H 1.08997 * 109.47360 * 56.55425 * 1 2 3 27 27 H 1.09000 * 109.47105 * 239.99937 * 2 1 3 28 28 H 1.08997 * 109.47220 * 119.99426 * 2 1 3 29 29 H 0.97007 * 119.99868 * 355.62459 * 6 4 3 30 30 H 1.09002 * 109.46862 * 299.99410 * 7 6 4 31 31 H 1.09001 * 109.47099 * 59.99484 * 7 6 4 32 32 H 1.09002 * 109.46849 * 299.99470 * 8 7 6 33 33 H 1.08997 * 109.47115 * 59.99986 * 8 7 6 34 34 H 1.08994 * 109.47148 * 299.99719 * 9 8 7 35 35 H 1.09001 * 109.47142 * 59.99610 * 9 8 7 36 36 H 0.96992 * 120.00037 * 359.97438 * 10 9 8 37 37 H 0.96994 * 120.00373 * 180.02562 * 14 13 11 38 38 H 1.09006 * 109.52529 * 296.84209 * 19 3 2 39 39 H 1.09006 * 109.52693 * 57.02801 * 19 3 2 40 40 H 1.09001 * 109.45733 * 182.45232 * 20 19 3 41 41 H 1.08999 * 109.46495 * 62.44784 * 20 19 3 42 42 H 1.09002 * 109.47988 * 178.85493 * 22 21 20 43 43 H 1.09005 * 109.48582 * 58.83581 * 22 21 20 44 44 H 1.08998 * 109.52108 * 297.70067 * 23 22 21 45 45 H 1.09000 * 109.57740 * 177.54440 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5965 2.1340 1.2634 5 8 0.7942 3.0419 1.2083 6 7 2.0916 1.7436 2.4546 7 6 1.7397 2.4802 3.6711 8 6 2.4286 1.8350 4.8753 9 6 2.0615 2.6047 6.1456 10 7 2.7206 1.9865 7.2988 11 6 2.5387 2.5077 8.5520 12 1 1.9090 3.3742 8.6903 13 6 3.1636 1.9223 9.6444 14 7 3.9306 0.8660 9.4760 15 14 2.9150 2.6327 11.3541 16 1 1.4719 2.5921 11.7020 17 1 3.6840 1.8314 12.3398 18 1 3.3908 4.0392 11.3797 19 6 3.5699 1.4452 -0.0757 20 6 4.0648 2.8938 -0.1545 21 8 3.4792 3.5358 -1.2889 22 6 2.0523 3.6032 -1.2492 23 6 1.4765 2.1852 -1.2154 24 1 -0.3633 -1.0258 -0.0617 25 1 -0.3632 0.4594 0.9193 26 1 -0.3634 0.5664 -0.8574 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 2.6840 0.9772 2.5060 30 1 2.0673 3.5156 3.5764 31 1 0.6593 2.4525 3.8130 32 1 2.1006 0.7998 4.9698 33 1 3.5089 1.8625 4.7336 34 1 2.3898 3.6398 6.0509 35 1 0.9811 2.5777 6.2875 36 1 3.2858 1.2082 7.1745 37 1 4.3670 0.4567 10.2394 38 1 3.9794 0.9659 0.8136 39 1 3.8916 0.9018 -0.9642 40 1 5.1503 2.9017 -0.2525 41 1 3.7777 3.4255 0.7526 42 1 1.6882 4.1225 -2.1357 43 1 1.7386 4.1444 -0.3565 44 1 1.7560 1.6568 -2.1269 45 1 0.3901 2.2338 -1.1412 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169488594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:42 Heat of formation + Delta-G solvation = -117.648156 kcal Electronic energy + Delta-G solvation = -23191.009499 eV Core-core repulsion = 19820.929204 eV Total energy + Delta-G solvation = -3370.080295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03366 -39.29032 -37.53831 -36.49623 -35.95468 -33.77546 -32.33169 -31.58131 -31.14079 -27.45608 -26.36945 -24.74088 -24.59255 -23.01418 -22.63676 -22.56776 -20.28584 -19.12193 -17.81704 -17.29886 -17.09565 -16.91936 -16.78355 -16.51179 -15.99692 -15.55032 -15.39038 -15.31482 -15.01193 -14.76605 -14.39816 -14.17725 -13.73165 -13.34011 -13.28019 -13.24378 -12.99292 -12.79807 -12.61946 -12.48410 -12.39765 -12.23260 -12.11684 -12.08906 -11.95151 -11.80531 -11.42472 -11.35051 -10.95311 -10.72637 -10.37334 -10.09937 -9.03672 -7.97846 -5.27279 1.47053 1.49966 1.56190 1.60713 2.13255 2.55414 2.92936 3.35865 3.46856 3.52654 3.72784 3.73941 3.98412 4.00782 4.05333 4.25014 4.26046 4.30776 4.42831 4.47374 4.48338 4.54785 4.66393 4.69493 4.70174 4.78285 4.83029 4.85916 4.92003 5.01561 5.03845 5.12074 5.14356 5.21028 5.26978 5.28793 5.38570 5.42690 5.47090 6.21343 6.24804 6.52470 7.21860 7.31385 8.05575 8.29853 9.25395 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.029107 B = 0.002861 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.722995 B = 9782.899932 C =10015.536596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.106 4.106 3 C -0.076 4.076 4 C 0.520 3.480 5 O -0.576 6.576 6 N -0.717 5.717 7 C 0.135 3.865 8 C -0.117 4.117 9 C 0.152 3.848 10 N -0.746 5.746 11 C -0.253 4.253 12 H 0.074 0.926 13 C -0.073 4.073 14 N -0.968 5.968 15 Si 0.974 3.026 16 H -0.278 1.278 17 H -0.292 1.292 18 H -0.278 1.278 19 C -0.139 4.139 20 C 0.050 3.950 21 O -0.397 6.397 22 C 0.049 3.951 23 C -0.126 4.126 24 H 0.071 0.929 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.412 0.588 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.021 0.979 35 H 0.020 0.980 36 H 0.376 0.624 37 H 0.253 0.747 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.029 0.971 42 H 0.103 0.897 43 H 0.042 0.958 44 H 0.097 0.903 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 -2.595 -25.521 25.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.143 4.143 3 C -0.079 4.079 4 C 0.308 3.692 5 O -0.456 6.456 6 N -0.369 5.369 7 C 0.010 3.990 8 C -0.155 4.155 9 C 0.025 3.975 10 N -0.389 5.389 11 C -0.385 4.385 12 H 0.092 0.908 13 C -0.265 4.265 14 N -0.618 5.618 15 Si 0.803 3.197 16 H -0.204 1.204 17 H -0.219 1.219 18 H -0.204 1.204 19 C -0.177 4.177 20 C -0.026 4.026 21 O -0.316 6.316 22 C -0.028 4.028 23 C -0.164 4.164 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.249 0.751 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.208 0.792 37 H 0.062 0.938 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.047 0.953 42 H 0.121 0.879 43 H 0.060 0.940 44 H 0.115 0.885 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.659 -1.741 -25.570 25.767 hybrid contribution 0.063 -0.154 1.600 1.608 sum -2.596 -1.896 -23.970 24.185 Atomic orbital electron populations 1.21870 0.95969 1.02459 1.01280 1.21603 0.95935 0.92149 1.04645 1.21008 0.97552 0.97584 0.91770 1.21011 0.79860 0.82768 0.85597 1.90655 1.35198 1.32240 1.87507 1.45963 1.50795 1.33889 1.06294 1.21049 0.99426 0.95446 0.83074 1.21690 1.01237 1.00111 0.92473 1.20670 0.95236 0.95282 0.86290 1.42519 1.57943 1.35483 1.02983 1.19610 1.23538 1.09571 0.85777 0.90826 1.25574 1.00289 0.98805 1.01840 1.69792 1.36607 1.24596 1.30813 0.85204 0.77561 0.77547 0.79405 1.20405 1.21852 1.20373 1.22354 0.91989 0.97725 1.05625 1.22766 0.99485 0.92290 0.88071 1.87885 1.20495 1.79466 1.43799 1.22781 0.80306 0.97115 1.02562 1.22069 1.01346 0.95833 0.97173 0.91028 0.95134 0.91925 0.88226 0.90411 0.75072 0.92298 0.92305 0.90762 0.90630 0.96143 0.96214 0.79182 0.93823 0.88641 0.87740 0.86834 0.95252 0.87857 0.93997 0.88491 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.33 71.98 0.67 -1.67 16 2 C -0.11 -1.25 4.98 30.60 0.15 -1.10 16 3 C -0.08 -1.20 0.43 -52.81 -0.02 -1.23 16 4 C 0.52 11.95 3.97 87.66 0.35 12.30 16 5 O -0.58 -17.86 14.14 -3.03 -0.04 -17.90 16 6 N -0.72 -15.07 5.35 -463.06 -2.48 -17.55 16 7 C 0.13 3.51 5.68 86.38 0.49 4.00 16 8 C -0.12 -3.39 5.44 30.60 0.17 -3.23 16 9 C 0.15 5.99 6.26 86.38 0.54 6.54 16 10 N -0.75 -37.88 5.60 -343.45 -1.92 -39.80 16 11 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 12 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 13 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 14 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 15 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 17 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 C -0.14 -1.77 4.82 30.75 0.15 -1.62 16 20 C 0.05 0.89 6.62 72.08 0.48 1.37 16 21 O -0.40 -8.63 10.77 -148.98 -1.60 -10.24 16 22 C 0.05 1.01 6.56 72.01 0.47 1.48 16 23 C -0.13 -2.11 4.03 30.68 0.12 -1.99 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.03 0.60 7.43 -2.39 -0.02 0.58 16 26 H 0.06 0.90 6.26 -2.39 -0.01 0.89 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.81 7.90 -2.39 -0.02 0.79 16 29 H 0.41 6.46 7.34 -92.70 -0.68 5.78 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.38 19.88 7.67 -92.71 -0.71 19.17 16 37 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 38 H 0.10 0.92 7.22 -2.38 -0.02 0.90 16 39 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.03 0.63 7.38 -2.39 -0.02 0.62 16 42 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.04 1.11 6.07 -2.38 -0.01 1.09 16 44 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 1.43 6.28 -2.39 -0.02 1.42 16 Total: -1.00 -70.46 350.80 0.72 -69.74 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.41 Total: 28.44 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 4.87 Total: -2.29 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -4.12 Total: -115.79 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.65 Total: -28.14 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -70.46 0.72 -69.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169488594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.908 kcal (2) G-P(sol) polarization free energy of solvation -70.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds