Wall clock time and date at job start Tue Mar 31 2020 03:33:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.46730 * 2 1
4 4 C 1.52999 * 109.47018 * 178.21192 * 3 2 1
5 5 H 1.08998 * 109.47211 * 301.71966 * 4 3 2
6 6 O 1.42901 * 109.46895 * 61.71685 * 4 3 2
7 7 C 1.42894 * 114.00288 * 260.87245 * 6 4 3
8 8 C 1.50703 * 109.47223 * 181.71893 * 4 3 2
9 9 O 1.21279 * 119.99923 * 250.00627 * 8 4 3
10 10 N 1.34780 * 119.99974 * 70.01175 * 8 4 3
11 11 C 1.47425 * 125.64619 * 4.10234 * 10 8 4
12 12 C 1.54908 * 104.83227 * 204.16781 * 11 10 8
13 13 C 1.55163 * 101.58207 * 322.99413 * 12 11 10
14 14 H 1.08999 * 110.87159 * 277.06694 * 13 12 11
15 15 N 1.46499 * 110.72077 * 153.86227 * 13 12 11
16 16 C 1.46497 * 120.00108 * 306.47569 * 15 13 12
17 17 C 1.36939 * 119.99790 * 126.47972 * 15 13 12
18 18 H 1.07999 * 120.00219 * 21.43492 * 17 15 13
19 19 C 1.38806 * 120.00047 * 201.44524 * 17 15 13
20 20 N 1.31625 * 120.00245 * 13.60331 * 19 17 15
21 21 Si 1.86807 * 120.00083 * 193.61259 * 19 17 15
22 22 H 1.48499 * 109.46943 * 89.99118 * 21 19 17
23 23 H 1.48494 * 109.47101 * 209.99208 * 21 19 17
24 24 H 1.48495 * 109.46710 * 329.99616 * 21 19 17
25 25 C 1.47016 * 125.64652 * 184.15002 * 10 8 4
26 26 H 1.09008 * 109.47266 * 60.00126 * 1 2 3
27 27 H 1.09004 * 109.47276 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.47377 * 299.99805 * 1 2 3
29 29 H 1.08994 * 109.47256 * 239.99865 * 2 1 3
30 30 H 1.08997 * 109.46887 * 119.99556 * 2 1 3
31 31 H 1.09006 * 109.47049 * 58.21458 * 3 2 1
32 32 H 1.09001 * 109.47603 * 298.21229 * 3 2 1
33 33 H 1.09001 * 109.47691 * 296.35813 * 7 6 4
34 34 H 1.09010 * 109.46938 * 56.35565 * 7 6 4
35 35 H 1.08996 * 109.47171 * 176.35161 * 7 6 4
36 36 H 1.09003 * 110.36675 * 323.00565 * 11 10 8
37 37 H 1.08999 * 110.36529 * 85.22212 * 11 10 8
38 38 H 1.08999 * 111.00698 * 204.91807 * 12 11 10
39 39 H 1.09005 * 111.00415 * 81.06372 * 12 11 10
40 40 H 1.08999 * 109.46968 * 88.90139 * 16 15 13
41 41 H 1.09002 * 109.46714 * 208.89798 * 16 15 13
42 42 H 1.08997 * 109.47479 * 328.90079 * 16 15 13
43 43 H 0.96999 * 120.00142 * 180.02562 * 20 19 17
44 44 H 1.08997 * 109.88696 * 59.48372 * 25 10 8
45 45 H 1.08996 * 109.88435 * 298.31278 * 25 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5692 1.4428 0.0450
5 1 3.9067 0.9117 0.9350
6 8 4.0802 0.7922 -1.1202
7 6 4.4633 -0.5676 -0.9058
8 6 4.0703 2.8635 0.0876
9 8 4.6394 3.3348 -0.8740
10 7 3.8860 3.6102 1.1944
11 6 3.2904 3.1402 2.4585
12 6 2.7402 4.4193 3.1374
13 6 3.8250 5.4629 2.7609
14 1 4.6706 5.4086 3.4464
15 7 3.2601 6.8145 2.7437
16 6 2.0683 7.1002 1.9410
17 6 3.8461 7.8109 3.4778
18 1 4.8785 7.7217 3.7821
19 6 3.1131 8.9355 3.8312
20 7 1.8032 8.9347 3.7020
21 14 3.9857 10.4502 4.4899
22 1 4.3453 11.3447 3.3604
23 1 3.0865 11.1716 5.4258
24 1 5.2191 10.0381 5.2070
25 6 4.2446 5.0284 1.3407
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3634 0.5138 0.8900
29 1 1.8934 -0.5138 -0.8899
30 1 1.8933 -0.5138 0.8900
31 1 1.6506 1.9655 0.8736
32 1 1.7030 1.9471 -0.9056
33 1 5.2876 -0.6050 -0.1937
34 1 3.6151 -1.1259 -0.5094
35 1 4.7792 -1.0094 -1.8508
36 1 2.4806 2.4385 2.2586
37 1 4.0502 2.6730 3.0852
38 1 2.6786 4.2924 4.2182
39 1 1.7711 4.6960 2.7221
40 1 1.1753 6.9129 2.5372
41 1 2.0834 8.1439 1.6271
42 1 2.0597 6.4563 1.0615
43 1 1.2911 9.7207 3.9485
44 1 3.7128 5.6238 0.5986
45 1 5.3204 5.1533 1.2176
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001191697063.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:33:40
Heat of formation + Delta-G solvation = -55.392998 kcal
Electronic energy + Delta-G solvation = -23679.578588 eV
Core-core repulsion = 20312.197879 eV
Total energy + Delta-G solvation = -3367.380709 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 284.189 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.17857 -38.32220 -37.02878 -35.00341 -34.54434 -31.77540 -30.34206 -29.65112
-27.78327 -26.80621 -26.06598 -24.79590 -22.96341 -22.32698 -21.45305 -19.39814
-19.12581 -17.42468 -17.05379 -16.59469 -16.10335 -15.62313 -15.21865 -15.00246
-14.59060 -14.13035 -13.72639 -13.54651 -13.41119 -13.31980 -12.94969 -12.64256
-12.41731 -12.34663 -12.16572 -11.83072 -11.61193 -11.44460 -11.39852 -11.24663
-10.96878 -10.82900 -10.77338 -10.60691 -10.44386 -10.24968 -10.04709 -9.89574
-9.88816 -9.28375 -8.57290 -8.32958 -6.85668 -5.79925 -3.24047 2.76503
2.89914 3.36616 3.43412 3.44008 3.85112 4.42713 4.45207 4.62545
4.68301 4.85053 4.90689 4.99796 5.12197 5.16379 5.21504 5.31214
5.33301 5.42577 5.45045 5.52519 5.54609 5.59855 5.67914 5.74111
5.87649 5.91640 5.96437 5.98507 6.11037 6.30689 6.37128 6.51819
6.61203 6.80743 6.84878 6.93907 7.35028 7.64457 7.76591 7.76904
8.32307 8.39037 9.16731 9.79210 10.27365 11.26395
Molecular weight = 284.19amu
Principal moments of inertia in cm(-1)
A = 0.029042 B = 0.003707 C = 0.003476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 963.878828 B = 7551.821609 C = 8053.979881
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.124 4.124
3 C -0.138 4.138
4 C 0.079 3.921
5 H 0.083 0.917
6 O -0.357 6.357
7 C 0.023 3.977
8 C 0.521 3.479
9 O -0.527 6.527
10 N -0.611 5.611
11 C 0.092 3.908
12 C -0.150 4.150
13 C 0.173 3.827
14 H 0.079 0.921
15 N -0.586 5.586
16 C 0.161 3.839
17 C -0.261 4.261
18 H 0.071 0.929
19 C 0.004 3.996
20 N -0.906 5.906
21 Si 0.907 3.093
22 H -0.287 1.287
23 H -0.291 1.291
24 H -0.279 1.279
25 C 0.088 3.912
26 H 0.056 0.944
27 H 0.054 0.946
28 H 0.056 0.944
29 H 0.069 0.931
30 H 0.061 0.939
31 H 0.084 0.916
32 H 0.078 0.922
33 H 0.041 0.959
34 H 0.048 0.952
35 H 0.088 0.912
36 H 0.072 0.928
37 H 0.066 0.934
38 H 0.079 0.921
39 H 0.077 0.923
40 H 0.023 0.977
41 H 0.055 0.945
42 H -0.002 1.002
43 H 0.253 0.747
44 H 0.072 0.928
45 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.642 -19.626 -3.553 19.955
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.162 4.162
3 C -0.176 4.176
4 C 0.018 3.982
5 H 0.101 0.899
6 O -0.275 6.275
7 C -0.074 4.074
8 C 0.308 3.692
9 O -0.402 6.402
10 N -0.347 5.347
11 C -0.031 4.031
12 C -0.190 4.190
13 C 0.062 3.938
14 H 0.097 0.903
15 N -0.306 5.306
16 C 0.016 3.984
17 C -0.390 4.390
18 H 0.089 0.911
19 C -0.194 4.194
20 N -0.550 5.550
21 Si 0.737 3.263
22 H -0.214 1.214
23 H -0.217 1.217
24 H -0.204 1.204
25 C -0.037 4.037
26 H 0.075 0.925
27 H 0.073 0.927
28 H 0.075 0.925
29 H 0.087 0.913
30 H 0.079 0.921
31 H 0.102 0.898
32 H 0.097 0.903
33 H 0.060 0.940
34 H 0.067 0.933
35 H 0.106 0.894
36 H 0.090 0.910
37 H 0.084 0.916
38 H 0.097 0.903
39 H 0.095 0.905
40 H 0.041 0.959
41 H 0.074 0.926
42 H 0.016 0.984
43 H 0.064 0.936
44 H 0.090 0.910
45 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -0.432 -19.137 -4.287 19.616
hybrid contribution 0.319 0.653 0.685 0.999
sum -0.112 -18.483 -3.602 18.832
Atomic orbital electron populations
1.21766 0.95329 1.01618 1.02241 1.21609 0.96421 0.96116 1.02042
1.22136 0.92887 0.98316 1.04220 1.21942 0.94608 0.91778 0.89914
0.89939 1.88039 1.83136 1.24667 1.31632 1.23017 0.98847 0.82979
1.02540 1.20109 0.79946 0.87197 0.81963 1.90704 1.41632 1.72983
1.34930 1.48461 1.61289 1.12486 1.12419 1.22534 0.97222 0.98300
0.85078 1.23339 1.01161 0.93987 1.00495 1.21303 0.94824 0.85583
0.92056 0.90269 1.43885 1.31207 1.03476 1.52075 1.20784 0.88415
0.98599 0.90557 1.19259 0.94198 0.97140 1.28386 0.91126 1.24984
0.95186 0.99619 0.99642 1.70086 1.04190 1.28843 1.51899 0.86219
0.78627 0.83123 0.78342 1.21413 1.21746 1.20437 1.22813 1.00065
0.79382 1.01414 0.92527 0.92716 0.92466 0.91286 0.92073 0.89774
0.90322 0.94042 0.93343 0.89353 0.91016 0.91580 0.90288 0.90465
0.95908 0.92603 0.98360 0.93646 0.90977 0.92107
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16
2 C -0.12 -1.03 4.70 -26.73 -0.13 -1.16 16
3 C -0.14 -1.49 4.75 -26.73 -0.13 -1.62 16
4 C 0.08 1.00 2.05 -27.88 -0.06 0.94 16
5 H 0.08 0.84 7.54 -51.93 -0.39 0.44 16
6 O -0.36 -4.86 9.61 -54.94 -0.53 -5.39 16
7 C 0.02 0.20 10.29 101.05 1.04 1.24 16
8 C 0.52 8.81 7.17 -10.98 -0.08 8.73 16
9 O -0.53 -11.27 16.86 -14.15 -0.24 -11.50 16
10 N -0.61 -9.81 3.33 -170.52 -0.57 -10.38 16
11 C 0.09 1.18 6.49 -2.53 -0.02 1.16 16
12 C -0.15 -2.40 6.62 -24.58 -0.16 -2.56 16
13 C 0.17 3.35 3.45 -66.09 -0.23 3.13 16
14 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16
15 N -0.59 -14.15 2.93 -171.39 -0.50 -14.65 16
16 C 0.16 3.88 7.57 59.85 0.45 4.33 16
17 C -0.26 -6.94 9.62 -15.06 -0.14 -7.09 16
18 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16
19 C 0.00 0.12 5.05 -17.43 -0.09 0.03 16
20 N -0.91 -25.75 10.69 55.49 0.59 -25.15 16
21 Si 0.91 21.48 29.58 -169.99 -5.03 16.45 16
22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
25 C 0.09 1.64 6.42 -3.06 -0.02 1.62 16
26 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16
27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
29 H 0.07 0.58 6.35 -51.93 -0.33 0.25 16
30 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16
31 H 0.08 0.87 5.65 -51.93 -0.29 0.58 16
32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16
33 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16
34 H 0.05 0.34 5.75 -51.92 -0.30 0.04 16
35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.07 0.75 5.27 -51.93 -0.27 0.48 16
37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
39 H 0.08 1.35 7.03 -51.93 -0.37 0.98 16
40 H 0.02 0.58 7.63 -51.93 -0.40 0.18 16
41 H 0.06 1.48 6.82 -51.93 -0.35 1.13 16
42 H 0.00 -0.04 6.52 -51.93 -0.34 -0.38 16
43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16
44 H 0.07 1.51 6.38 -51.93 -0.33 1.18 16
45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
LS Contribution 348.84 15.07 5.26 5.26
Total: -1.00 -32.09 348.84 -7.76 -39.85
By element:
Atomic # 1 Polarization: 5.13 SS G_CDS: -7.56 Total: -2.43 kcal
Atomic # 6 Polarization: 7.14 SS G_CDS: 0.81 Total: 7.96 kcal
Atomic # 7 Polarization: -49.71 SS G_CDS: -0.48 Total: -50.19 kcal
Atomic # 8 Polarization: -16.13 SS G_CDS: -0.77 Total: -16.90 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -32.09 -7.76 -39.85 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001191697063.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.546 kcal
(2) G-P(sol) polarization free energy of solvation -32.089 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.393 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds