Wall clock time and date at job start Tue Mar 31 2020 03:33:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.46730 * 2 1
4 4 C 1.52999 * 109.47018 * 178.21192 * 3 2 1
5 5 H 1.08998 * 109.47211 * 301.71966 * 4 3 2
6 6 O 1.42901 * 109.46895 * 61.71685 * 4 3 2
7 7 C 1.42894 * 114.00288 * 260.87245 * 6 4 3
8 8 C 1.50703 * 109.47223 * 181.71893 * 4 3 2
9 9 O 1.21279 * 119.99923 * 250.00627 * 8 4 3
10 10 N 1.34780 * 119.99974 * 70.01175 * 8 4 3
11 11 C 1.47425 * 125.64619 * 4.10234 * 10 8 4
12 12 C 1.54908 * 104.83227 * 204.16781 * 11 10 8
13 13 C 1.55163 * 101.58207 * 322.99413 * 12 11 10
14 14 H 1.08999 * 110.87159 * 277.06694 * 13 12 11
15 15 N 1.46499 * 110.72077 * 153.86227 * 13 12 11
16 16 C 1.46497 * 120.00108 * 306.47569 * 15 13 12
17 17 C 1.36939 * 119.99790 * 126.47972 * 15 13 12
18 18 H 1.07999 * 120.00219 * 21.43492 * 17 15 13
19 19 C 1.38806 * 120.00047 * 201.44524 * 17 15 13
20 20 N 1.31625 * 120.00245 * 13.60331 * 19 17 15
21 21 Si 1.86807 * 120.00083 * 193.61259 * 19 17 15
22 22 H 1.48499 * 109.46943 * 89.99118 * 21 19 17
23 23 H 1.48494 * 109.47101 * 209.99208 * 21 19 17
24 24 H 1.48495 * 109.46710 * 329.99616 * 21 19 17
25 25 C 1.47016 * 125.64652 * 184.15002 * 10 8 4
26 26 H 1.09008 * 109.47266 * 60.00126 * 1 2 3
27 27 H 1.09004 * 109.47276 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.47377 * 299.99805 * 1 2 3
29 29 H 1.08994 * 109.47256 * 239.99865 * 2 1 3
30 30 H 1.08997 * 109.46887 * 119.99556 * 2 1 3
31 31 H 1.09006 * 109.47049 * 58.21458 * 3 2 1
32 32 H 1.09001 * 109.47603 * 298.21229 * 3 2 1
33 33 H 1.09001 * 109.47691 * 296.35813 * 7 6 4
34 34 H 1.09010 * 109.46938 * 56.35565 * 7 6 4
35 35 H 1.08996 * 109.47171 * 176.35161 * 7 6 4
36 36 H 1.09003 * 110.36675 * 323.00565 * 11 10 8
37 37 H 1.08999 * 110.36529 * 85.22212 * 11 10 8
38 38 H 1.08999 * 111.00698 * 204.91807 * 12 11 10
39 39 H 1.09005 * 111.00415 * 81.06372 * 12 11 10
40 40 H 1.08999 * 109.46968 * 88.90139 * 16 15 13
41 41 H 1.09002 * 109.46714 * 208.89798 * 16 15 13
42 42 H 1.08997 * 109.47479 * 328.90079 * 16 15 13
43 43 H 0.96999 * 120.00142 * 180.02562 * 20 19 17
44 44 H 1.08997 * 109.88696 * 59.48372 * 25 10 8
45 45 H 1.08996 * 109.88435 * 298.31278 * 25 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5692 1.4428 0.0450
5 1 3.9067 0.9117 0.9350
6 8 4.0802 0.7922 -1.1202
7 6 4.4633 -0.5676 -0.9058
8 6 4.0703 2.8635 0.0876
9 8 4.6394 3.3348 -0.8740
10 7 3.8860 3.6102 1.1944
11 6 3.2904 3.1402 2.4585
12 6 2.7402 4.4193 3.1374
13 6 3.8250 5.4629 2.7609
14 1 4.6706 5.4086 3.4464
15 7 3.2601 6.8145 2.7437
16 6 2.0683 7.1002 1.9410
17 6 3.8461 7.8109 3.4778
18 1 4.8785 7.7217 3.7821
19 6 3.1131 8.9355 3.8312
20 7 1.8032 8.9347 3.7020
21 14 3.9857 10.4502 4.4899
22 1 4.3453 11.3447 3.3604
23 1 3.0865 11.1716 5.4258
24 1 5.2191 10.0381 5.2070
25 6 4.2446 5.0284 1.3407
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3634 0.5138 0.8900
29 1 1.8934 -0.5138 -0.8899
30 1 1.8933 -0.5138 0.8900
31 1 1.6506 1.9655 0.8736
32 1 1.7030 1.9471 -0.9056
33 1 5.2876 -0.6050 -0.1937
34 1 3.6151 -1.1259 -0.5094
35 1 4.7792 -1.0094 -1.8508
36 1 2.4806 2.4385 2.2586
37 1 4.0502 2.6730 3.0852
38 1 2.6786 4.2924 4.2182
39 1 1.7711 4.6960 2.7221
40 1 1.1753 6.9129 2.5372
41 1 2.0834 8.1439 1.6271
42 1 2.0597 6.4563 1.0615
43 1 1.2911 9.7207 3.9485
44 1 3.7128 5.6238 0.5986
45 1 5.3204 5.1533 1.2176
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001191697063.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:33:39
Heat of formation + Delta-G solvation = -75.389215 kcal
Electronic energy + Delta-G solvation = -23680.445689 eV
Core-core repulsion = 20312.197879 eV
Total energy + Delta-G solvation = -3368.247810 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 284.189 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.42330 -39.50331 -38.39142 -36.61886 -35.44112 -33.50656 -31.65301 -30.87661
-29.19546 -28.07793 -27.50732 -26.00860 -24.46603 -23.65125 -22.18113 -20.94513
-20.42705 -18.94122 -18.52020 -17.69533 -17.49578 -16.82851 -16.45687 -16.23273
-15.79318 -15.45699 -15.11809 -15.03488 -14.49310 -14.43498 -14.22539 -14.03819
-13.91374 -13.39042 -13.12193 -13.04355 -12.96689 -12.84521 -12.53052 -12.45663
-12.37212 -12.29855 -12.21087 -12.07090 -11.92151 -11.82506 -11.56759 -11.36871
-11.04728 -10.62830 -10.40697 -9.69050 -8.83651 -7.86303 -5.31716 1.47305
1.48551 1.50026 1.57498 1.71862 2.50506 2.92349 3.27747 3.40360
3.55909 3.76827 3.83205 3.83876 4.00035 4.17811 4.24621 4.27343
4.32233 4.45585 4.50127 4.53834 4.57127 4.67494 4.72524 4.77713
4.84233 4.90439 4.96952 4.99127 5.03930 5.14886 5.22527 5.26978
5.31952 5.34232 5.39105 5.46079 5.61130 5.68135 6.08859 6.30469
6.50864 7.07547 7.12787 7.82803 8.27169 9.19007
Molecular weight = 284.19amu
Principal moments of inertia in cm(-1)
A = 0.029042 B = 0.003707 C = 0.003476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 963.878828 B = 7551.821609 C = 8053.979881
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.118 4.118
3 C -0.133 4.133
4 C 0.088 3.912
5 H 0.118 0.882
6 O -0.391 6.391
7 C 0.015 3.985
8 C 0.513 3.487
9 O -0.583 6.583
10 N -0.609 5.609
11 C 0.099 3.901
12 C -0.140 4.140
13 C 0.166 3.834
14 H 0.084 0.916
15 N -0.603 5.603
16 C 0.182 3.818
17 C -0.268 4.268
18 H 0.075 0.925
19 C -0.048 4.048
20 N -0.936 5.936
21 Si 0.968 3.032
22 H -0.291 1.291
23 H -0.294 1.294
24 H -0.266 1.266
25 C 0.098 3.902
26 H 0.044 0.956
27 H 0.068 0.932
28 H 0.058 0.942
29 H 0.068 0.932
30 H 0.085 0.915
31 H 0.091 0.909
32 H 0.053 0.947
33 H 0.050 0.950
34 H 0.072 0.928
35 H 0.096 0.904
36 H 0.105 0.895
37 H 0.098 0.902
38 H 0.092 0.908
39 H 0.060 0.940
40 H 0.006 0.994
41 H 0.023 0.977
42 H 0.015 0.985
43 H 0.249 0.751
44 H 0.042 0.958
45 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.352 -22.446 -2.229 22.559
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.156 4.156
3 C -0.171 4.171
4 C 0.027 3.973
5 H 0.136 0.864
6 O -0.310 6.310
7 C -0.080 4.080
8 C 0.302 3.698
9 O -0.463 6.463
10 N -0.343 5.343
11 C -0.023 4.023
12 C -0.180 4.180
13 C 0.058 3.942
14 H 0.103 0.897
15 N -0.324 5.324
16 C 0.037 3.963
17 C -0.398 4.398
18 H 0.093 0.907
19 C -0.244 4.244
20 N -0.582 5.582
21 Si 0.797 3.203
22 H -0.218 1.218
23 H -0.221 1.221
24 H -0.191 1.191
25 C -0.028 4.028
26 H 0.064 0.936
27 H 0.087 0.913
28 H 0.077 0.923
29 H 0.086 0.914
30 H 0.103 0.897
31 H 0.109 0.891
32 H 0.072 0.928
33 H 0.069 0.931
34 H 0.090 0.910
35 H 0.115 0.885
36 H 0.123 0.877
37 H 0.117 0.883
38 H 0.111 0.889
39 H 0.079 0.921
40 H 0.024 0.976
41 H 0.042 0.958
42 H 0.033 0.967
43 H 0.058 0.942
44 H 0.061 0.939
45 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -0.132 -22.019 -2.937 22.214
hybrid contribution 0.276 1.475 0.214 1.515
sum 0.144 -20.544 -2.723 20.724
Atomic orbital electron populations
1.21775 0.95029 1.02417 1.01834 1.21590 0.96594 0.94215 1.03167
1.22123 0.91583 1.00139 1.03285 1.21972 0.95316 0.88854 0.91166
0.86429 1.88008 1.83449 1.27005 1.32516 1.23268 1.00146 0.81002
1.03616 1.21100 0.78806 0.88924 0.80948 1.90671 1.44231 1.74494
1.36896 1.48523 1.60957 1.11213 1.13646 1.22737 0.98959 0.97147
0.83408 1.23187 0.99012 0.94195 1.01616 1.21481 0.96005 0.84339
0.92414 0.89739 1.44039 1.31089 1.05290 1.51981 1.20426 0.88179
0.96881 0.90799 1.19598 0.94517 0.98024 1.27611 0.90720 1.25704
0.95811 1.02179 1.00677 1.70228 1.05393 1.29174 1.53410 0.85252
0.77914 0.79721 0.77456 1.21820 1.22071 1.19068 1.22443 0.99067
0.81196 1.00068 0.93632 0.91319 0.92267 0.91363 0.89671 0.89120
0.92836 0.93120 0.90965 0.88541 0.87667 0.88348 0.88908 0.92077
0.97569 0.95813 0.96701 0.94203 0.93935 0.92992
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.94 9.91 71.98 0.71 -1.23 16
2 C -0.12 -1.54 4.70 30.59 0.14 -1.40 16
3 C -0.13 -2.56 4.75 30.59 0.15 -2.41 16
4 C 0.09 1.99 2.05 29.85 0.06 2.06 16
5 H 0.12 1.82 7.54 -2.39 -0.02 1.80 16
6 O -0.39 -9.98 9.61 -130.14 -1.25 -11.23 16
7 C 0.02 0.23 10.29 113.37 1.17 1.39 16
8 C 0.51 16.88 7.17 87.66 0.63 17.51 16
9 O -0.58 -25.47 16.86 15.82 0.27 -25.20 16
10 N -0.61 -18.66 3.33 -811.80 -2.70 -21.36 16
11 C 0.10 2.17 6.49 86.85 0.56 2.74 16
12 C -0.14 -4.19 6.62 31.99 0.21 -3.98 16
13 C 0.17 6.34 3.45 46.18 0.16 6.50 16
14 H 0.08 3.12 7.93 -2.39 -0.02 3.10 16
15 N -0.60 -29.43 2.93 -696.14 -2.04 -31.47 16
16 C 0.18 9.05 7.57 127.77 0.97 10.02 16
17 C -0.27 -14.35 9.62 84.03 0.81 -13.54 16
18 H 0.08 3.86 7.85 -2.91 -0.02 3.83 16
19 C -0.05 -2.66 5.05 84.86 0.43 -2.23 16
20 N -0.94 -54.39 10.69 21.65 0.23 -54.16 16
21 Si 0.97 44.53 29.58 68.60 2.03 46.56 16
22 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16
23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16
24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16
25 C 0.10 3.67 6.42 86.73 0.56 4.23 16
26 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16
27 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16
28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
29 H 0.07 0.93 6.35 -2.39 -0.02 0.91 16
30 H 0.08 0.74 8.12 -2.39 -0.02 0.73 16
31 H 0.09 1.58 5.65 -2.38 -0.01 1.57 16
32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16
33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16
34 H 0.07 0.71 5.75 -2.38 -0.01 0.70 16
35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16
36 H 0.11 1.69 5.27 -2.39 -0.01 1.68 16
37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16
38 H 0.09 2.55 8.14 -2.39 -0.02 2.54 16
39 H 0.06 2.05 7.03 -2.38 -0.02 2.03 16
40 H 0.01 0.32 7.63 -2.39 -0.02 0.30 16
41 H 0.02 1.29 6.82 -2.39 -0.02 1.28 16
42 H 0.01 0.67 6.52 -2.39 -0.02 0.65 16
43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16
44 H 0.04 1.84 6.38 -2.39 -0.02 1.83 16
45 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16
Total: -1.00 -72.67 348.84 4.05 -68.62
By element:
Atomic # 1 Polarization: 7.63 SS G_CDS: 0.96 Total: 8.59 kcal
Atomic # 6 Polarization: 13.10 SS G_CDS: 6.56 Total: 19.65 kcal
Atomic # 7 Polarization: -102.48 SS G_CDS: -4.51 Total: -106.99 kcal
Atomic # 8 Polarization: -35.45 SS G_CDS: -0.98 Total: -36.43 kcal
Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal
Total: -72.67 4.05 -68.62 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001191697063.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.769 kcal
(2) G-P(sol) polarization free energy of solvation -72.669 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.437 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.621 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds