Wall clock time and date at job start Tue Mar 31 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47013 * 2 1 4 4 C 1.53001 * 109.46796 * 60.00142 * 3 2 1 5 5 C 1.52998 * 109.47318 * 300.00152 * 3 2 1 6 6 C 1.52997 * 109.46722 * 179.97438 * 3 2 1 7 7 C 1.50701 * 109.46842 * 180.02562 * 6 3 2 8 8 O 1.21277 * 119.99941 * 359.97438 * 7 6 3 9 9 N 1.34775 * 119.99910 * 180.02562 * 7 6 3 10 10 C 1.46504 * 119.99904 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.88589 * 34.29587 * 10 9 7 12 12 C 1.54909 * 111.00462 * 270.41314 * 10 9 7 13 13 N 1.47523 * 104.78433 * 204.90016 * 12 10 9 14 14 C 1.36938 * 125.63702 * 204.15649 * 13 12 10 15 15 H 1.08000 * 119.99838 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99820 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00351 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99832 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46814 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46876 * 120.00018 * 18 16 14 21 21 H 1.48494 * 109.47043 * 239.99927 * 18 16 14 22 22 C 1.47022 * 108.71559 * 24.12363 * 13 12 10 23 23 C 1.54330 * 107.27093 * 358.93837 * 22 13 12 24 24 H 1.09005 * 110.71759 * 96.17175 * 23 22 13 25 25 O 1.42893 * 110.87255 * 219.37056 * 23 22 13 26 26 H 1.09006 * 109.47287 * 59.99623 * 1 2 3 27 27 H 1.09002 * 109.47272 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47247 * 300.00170 * 1 2 3 29 29 H 1.09002 * 109.46870 * 240.00147 * 2 1 3 30 30 H 1.08996 * 109.46836 * 120.00079 * 2 1 3 31 31 H 1.09002 * 109.46619 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47211 * 299.99705 * 4 3 2 33 33 H 1.08993 * 109.47020 * 60.00257 * 4 3 2 34 34 H 1.09002 * 109.47146 * 300.00208 * 5 3 2 35 35 H 1.08999 * 109.47229 * 59.99964 * 5 3 2 36 36 H 1.08993 * 109.47216 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.47275 * 60.00714 * 6 3 2 38 38 H 1.08993 * 109.47446 * 299.99718 * 6 3 2 39 39 H 0.96994 * 120.00442 * 359.97438 * 9 7 6 40 40 H 1.09001 * 110.36668 * 323.71805 * 12 10 9 41 41 H 1.09004 * 110.36307 * 86.03933 * 12 10 9 42 42 H 0.97003 * 120.00159 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.88478 * 239.52488 * 22 13 12 44 44 H 1.08997 * 109.88284 * 118.35719 * 22 13 12 45 45 H 0.96700 * 114.00531 * 293.61213 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1638 -1.2492 6 6 3.5700 1.4425 0.0006 7 6 4.0723 2.8633 0.0013 8 8 3.2842 3.7851 0.0008 9 7 5.3974 3.1095 0.0014 10 6 5.8857 4.4908 0.0014 11 1 5.2220 5.1376 0.5752 12 6 6.0611 5.0178 -1.4447 13 7 7.0756 6.0833 -1.3366 14 6 7.2296 7.1296 -2.2065 15 1 6.5745 7.2231 -3.0600 16 6 8.2277 8.0700 -1.9912 17 7 9.0263 7.9558 -0.9514 18 14 8.4381 9.4970 -3.1783 19 1 7.4222 9.3975 -4.2568 20 1 8.2610 10.7781 -2.4486 21 1 9.7981 9.4499 -3.7727 22 6 7.8935 5.8364 -0.1400 23 6 7.3388 4.5669 0.5401 24 1 7.9084 3.6877 0.2386 25 8 7.3443 4.7074 1.9621 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8937 3.1913 1.2495 32 1 0.4400 2.1637 1.2493 33 1 1.8934 1.6499 2.1392 34 1 1.8933 1.6500 -2.1392 35 1 0.4400 2.1638 -1.2492 36 1 1.8937 3.1913 -1.2494 37 1 3.9337 0.9286 -0.8892 38 1 3.9329 0.9288 0.8908 39 1 6.0277 2.3723 0.0014 40 1 6.4158 4.2210 -2.0984 41 1 5.1208 5.4246 -1.8168 42 1 9.7235 8.6133 -0.8007 43 1 7.8195 6.6842 0.5410 44 1 8.9330 5.6789 -0.4276 45 1 8.2291 4.7595 2.3488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193247706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:42 Heat of formation + Delta-G solvation = -72.348966 kcal Electronic energy + Delta-G solvation = -23531.495703 eV Core-core repulsion = 20163.379728 eV Total energy + Delta-G solvation = -3368.115975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.14552 -38.29605 -36.89882 -35.06065 -34.00062 -31.79195 -30.91402 -28.79513 -27.77541 -27.17841 -26.68036 -24.52245 -23.79581 -20.80130 -20.44896 -20.03505 -18.61317 -17.20909 -16.99140 -16.46252 -15.70524 -15.26651 -14.97707 -14.81238 -14.65096 -14.11305 -14.02405 -13.41524 -13.30604 -12.88006 -12.68588 -12.52397 -12.30189 -12.10603 -11.85549 -11.80217 -11.69315 -11.27358 -11.13787 -11.07157 -10.87115 -10.84974 -10.82281 -10.56410 -10.53405 -10.12327 -9.89639 -9.84644 -9.49463 -9.14698 -8.76977 -8.60660 -6.91487 -5.76606 -3.11029 2.86892 3.36240 3.39525 3.44885 3.47260 4.43520 4.61386 4.63039 4.69769 4.75477 5.08637 5.13114 5.21843 5.34343 5.42465 5.44757 5.50261 5.57452 5.59699 5.60556 5.68504 5.81780 5.83168 5.87881 5.92332 5.96410 6.08988 6.09935 6.14484 6.15482 6.26906 6.49026 6.57263 6.61663 6.72269 6.94611 7.32346 7.46564 7.71231 7.78133 8.11087 8.17175 8.51309 9.14948 9.75016 10.38131 11.35228 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.028171 B = 0.003598 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.682307 B = 7779.407471 C = 8436.065695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.045 4.045 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.133 4.133 7 C 0.513 3.487 8 O -0.530 6.530 9 N -0.718 5.718 10 C 0.139 3.861 11 H 0.103 0.897 12 C 0.131 3.869 13 N -0.601 5.601 14 C -0.227 4.227 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.924 5.924 18 Si 0.915 3.085 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.154 3.846 23 C 0.068 3.932 24 H 0.056 0.944 25 O -0.563 6.563 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.396 0.604 40 H 0.023 0.977 41 H 0.050 0.950 42 H 0.252 0.748 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 -17.011 3.800 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.046 4.046 4 C -0.212 4.212 5 C -0.213 4.213 6 C -0.173 4.173 7 C 0.300 3.700 8 O -0.407 6.407 9 N -0.368 5.368 10 C 0.034 3.966 11 H 0.121 0.879 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.355 4.355 15 H 0.099 0.901 16 C -0.204 4.204 17 N -0.572 5.572 18 Si 0.745 3.255 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.028 3.972 23 C 0.008 3.992 24 H 0.074 0.926 25 O -0.368 6.368 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.229 0.771 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.611 -16.169 3.685 19.687 hybrid contribution 1.278 0.305 -0.519 1.413 sum -9.333 -15.864 3.166 18.676 Atomic orbital electron populations 1.21874 0.95883 1.01125 1.02317 1.21589 0.96163 0.95808 1.01564 1.20260 0.92186 0.94930 0.97200 1.22158 1.00661 1.02938 0.95473 1.22158 1.00662 1.02977 0.95466 1.21780 0.97234 0.94332 1.03953 1.20595 0.82137 0.91537 0.75770 1.90584 1.54462 1.46653 1.49000 1.46006 1.07012 1.08696 1.75095 1.22221 0.94297 0.82150 0.97967 0.87934 1.21862 0.93610 0.91532 0.92678 1.44282 1.34377 1.26529 1.27649 1.19142 1.13019 1.00046 1.03340 0.90097 1.24818 0.98133 0.99165 0.98322 1.69933 1.21553 1.36783 1.28896 0.85994 0.77481 0.82076 0.79929 1.20402 1.21660 1.21724 1.21811 0.94400 0.92240 0.88739 1.23458 0.95554 0.99279 0.80914 0.92596 1.86465 1.33405 1.96798 1.20156 0.92341 0.93222 0.92382 0.92168 0.92210 0.89590 0.92929 0.93770 0.93694 0.92931 0.89537 0.89157 0.89243 0.77083 0.95969 0.93179 0.93715 0.92136 0.93369 0.77720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.21 37.16 0.34 -0.91 16 2 C -0.11 -0.96 4.99 -26.73 -0.13 -1.10 16 3 C -0.05 -0.48 0.54 -154.51 -0.08 -0.56 16 4 C -0.16 -1.82 7.82 37.16 0.29 -1.52 16 5 C -0.16 -1.84 7.83 37.16 0.29 -1.55 16 6 C -0.13 -1.37 4.77 -27.88 -0.13 -1.51 16 7 C 0.51 7.41 7.24 -10.99 -0.08 7.33 16 8 O -0.53 -9.48 11.04 5.56 0.06 -9.42 16 9 N -0.72 -10.38 5.21 -51.73 -0.27 -10.65 16 10 C 0.14 2.60 3.09 -65.78 -0.20 2.40 16 11 H 0.10 2.23 7.63 -51.93 -0.40 1.83 16 12 C 0.13 2.80 6.94 -2.47 -0.02 2.78 16 13 N -0.60 -15.43 3.40 -169.99 -0.58 -16.01 16 14 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 15 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 17 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16 18 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 C 0.15 3.65 5.15 -3.06 -0.02 3.64 16 23 C 0.07 1.25 3.96 -24.89 -0.10 1.15 16 24 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 25 O -0.56 -9.73 13.40 -35.23 -0.47 -10.20 16 26 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 1.26 5.51 -51.93 -0.29 0.98 16 32 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.57 6.43 -51.93 -0.33 0.24 16 36 H 0.09 1.28 5.51 -51.93 -0.29 1.00 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.40 4.52 8.54 -40.82 -0.35 4.17 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 44 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 45 H 0.38 4.92 9.12 45.56 0.42 5.33 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -32.24 345.78 -7.36 -39.61 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.77 Total: 7.33 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -0.09 Total: 3.28 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.27 Total: -52.94 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.41 Total: -19.62 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.24 -7.36 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193247706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.742 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds