Wall clock time and date at job start Tue Mar 31 2020 03:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47397 * 2 1 4 4 C 1.53001 * 109.47332 * 177.88625 * 3 2 1 5 5 H 1.09002 * 109.46922 * 305.04221 * 4 3 2 6 6 O 1.42900 * 109.46757 * 65.03822 * 4 3 2 7 7 C 1.42900 * 114.00388 * 260.77163 * 6 4 3 8 8 C 1.50697 * 109.47129 * 185.04075 * 4 3 2 9 9 O 1.21280 * 119.99503 * 260.28817 * 8 4 3 10 10 N 1.34772 * 120.00096 * 80.29485 * 8 4 3 11 11 C 1.48218 * 119.96907 * 354.94396 * 10 8 4 12 12 C 1.47143 * 110.34037 * 102.47300 * 11 10 8 13 13 C 1.53795 * 111.83964 * 58.29862 * 12 11 10 14 14 N 1.43467 * 107.95739 * 281.66552 * 13 12 11 15 15 C 1.36937 * 118.93844 * 273.60906 * 14 13 12 16 16 H 1.07994 * 119.99756 * 27.68705 * 15 14 13 17 17 C 1.38815 * 119.99502 * 207.68424 * 15 14 13 18 18 N 1.31623 * 119.99321 * 200.78695 * 17 15 14 19 19 Si 1.86799 * 120.00280 * 20.79559 * 17 15 14 20 20 H 1.48498 * 109.46900 * 274.00989 * 19 17 15 21 21 H 1.48505 * 109.46838 * 154.01041 * 19 17 15 22 22 H 1.48498 * 109.47090 * 34.01241 * 19 17 15 23 23 C 1.48854 * 122.11925 * 93.89438 * 14 13 12 24 24 C 1.43624 * 119.97011 * 174.93102 * 10 8 4 25 25 H 1.08997 * 109.47118 * 304.85097 * 1 2 3 26 26 H 1.09003 * 109.46987 * 64.84924 * 1 2 3 27 27 H 1.08998 * 109.46845 * 184.84713 * 1 2 3 28 28 H 1.09007 * 109.47089 * 239.99702 * 2 1 3 29 29 H 1.09000 * 109.47114 * 120.00043 * 2 1 3 30 30 H 1.08998 * 109.46733 * 57.88606 * 3 2 1 31 31 H 1.08997 * 109.47164 * 297.88538 * 3 2 1 32 32 H 1.09002 * 109.46788 * 301.08206 * 7 6 4 33 33 H 1.08996 * 109.46885 * 61.08200 * 7 6 4 34 34 H 1.09001 * 109.47103 * 181.08562 * 7 6 4 35 35 H 1.08999 * 109.32457 * 342.20610 * 11 10 8 36 36 H 1.08996 * 109.18461 * 222.65435 * 11 10 8 37 37 H 1.08996 * 109.00211 * 297.69139 * 12 11 10 38 38 H 1.08998 * 109.00355 * 178.90554 * 12 11 10 39 39 H 1.08998 * 109.76146 * 162.04879 * 13 12 11 40 40 H 1.08999 * 109.80437 * 41.30374 * 13 12 11 41 41 H 0.97005 * 119.99593 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.48769 * 80.34378 * 23 14 13 43 43 H 1.09004 * 109.48409 * 200.37721 * 23 14 13 44 44 H 1.09000 * 108.87467 * 31.46182 * 24 10 8 45 45 H 1.09000 * 108.87059 * 149.99914 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5692 1.4428 0.0532 5 1 3.9029 0.8631 0.9139 6 8 4.0875 0.8593 -1.1439 7 6 4.4742 -0.5092 -1.0033 8 6 4.0672 2.8596 0.1780 9 8 4.4706 3.4490 -0.8021 10 7 4.0644 3.4715 1.3788 11 6 3.4688 2.7930 2.5542 12 6 4.5259 2.2394 3.4153 13 6 5.4976 3.3284 3.9001 14 7 6.4008 3.6255 2.8258 15 6 7.5320 2.8672 2.6822 16 1 7.5437 1.8443 3.0282 17 6 8.6633 3.4135 2.0918 18 7 9.5855 2.6246 1.5820 19 14 8.8773 5.2678 2.0213 20 1 8.1914 5.7997 0.8164 21 1 10.3238 5.5969 1.9533 22 1 8.2868 5.8809 3.2381 23 6 6.1510 4.7354 1.8658 24 6 4.6389 4.7805 1.5183 25 1 -0.3633 0.5872 0.8433 26 1 -0.3633 0.4368 -0.9303 27 1 -0.3633 -1.0240 0.0868 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6461 1.9671 0.8704 31 1 1.7081 1.9452 -0.9083 32 1 5.2374 -0.5934 -0.2297 33 1 3.6057 -1.1052 -0.7234 34 1 4.8746 -0.8726 -1.9498 35 1 2.8206 1.9853 2.2143 36 1 2.8802 3.5127 3.1231 37 1 5.0840 1.4897 2.8546 38 1 4.0655 1.7634 4.2810 39 1 6.0571 2.9657 4.7624 40 1 4.9412 4.2252 4.1725 41 1 10.3763 3.0063 1.1697 42 1 6.4519 5.6810 2.3170 43 1 6.7280 4.5665 0.9566 44 1 4.5078 5.3246 0.5830 45 1 4.1146 5.3128 2.3120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196725479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:01 Heat of formation + Delta-G solvation = -49.657350 kcal Electronic energy + Delta-G solvation = -24861.434631 eV Core-core repulsion = 21494.302639 eV Total energy + Delta-G solvation = -3367.131992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.20683 -38.05092 -36.83234 -34.84165 -34.25407 -32.45996 -31.53950 -30.10518 -27.73233 -26.56587 -25.94898 -24.56339 -23.15061 -22.08767 -21.24620 -19.99609 -18.81679 -17.42194 -16.66722 -16.60697 -15.77464 -15.52530 -15.22278 -14.82853 -14.51371 -14.32032 -13.83562 -13.58429 -13.47969 -13.39492 -12.99693 -12.70920 -12.60012 -12.39926 -12.18298 -11.96438 -11.69711 -11.39267 -11.36404 -11.16734 -11.10429 -10.93875 -10.78472 -10.50354 -10.34246 -10.05851 -9.93634 -9.75970 -9.49503 -9.00663 -8.56617 -8.14987 -6.91233 -5.92325 -3.29246 2.94085 3.25091 3.39753 3.50290 3.53293 4.05380 4.54823 4.57952 4.79274 4.82545 4.94848 5.00100 5.10152 5.12986 5.36479 5.42553 5.43266 5.44050 5.48428 5.56804 5.61260 5.65864 5.69210 5.76310 5.82852 5.83979 5.94890 5.99466 6.06584 6.10884 6.14792 6.22095 6.23657 6.44421 6.62693 6.74902 6.82624 7.05472 7.25184 7.77947 8.03339 8.37549 8.64814 9.00934 9.77048 10.10097 11.23834 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020810 B = 0.005857 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.188196 B = 4779.634767 C = 5131.591871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.135 4.135 4 C 0.077 3.923 5 H 0.085 0.915 6 O -0.357 6.357 7 C 0.023 3.977 8 C 0.518 3.482 9 O -0.524 6.524 10 N -0.587 5.587 11 C 0.116 3.884 12 C -0.174 4.174 13 C 0.164 3.836 14 N -0.601 5.601 15 C -0.268 4.268 16 H 0.082 0.918 17 C 0.029 3.971 18 N -0.906 5.906 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.304 1.304 22 H -0.276 1.276 23 C 0.107 3.893 24 C 0.104 3.896 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.036 0.964 41 H 0.262 0.738 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.192 -4.021 1.461 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.173 4.173 4 C 0.015 3.985 5 H 0.103 0.897 6 O -0.275 6.275 7 C -0.073 4.073 8 C 0.305 3.695 9 O -0.399 6.399 10 N -0.320 5.320 11 C -0.006 4.006 12 C -0.215 4.215 13 C 0.036 3.964 14 N -0.323 5.323 15 C -0.396 4.396 16 H 0.099 0.901 17 C -0.171 4.171 18 N -0.548 5.548 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.233 1.233 22 H -0.202 1.202 23 C -0.019 4.019 24 C -0.021 4.021 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.797 -3.604 0.675 18.170 hybrid contribution 0.416 0.752 0.258 0.897 sum -17.381 -2.852 0.932 17.638 Atomic orbital electron populations 1.21757 0.95553 1.01564 1.01897 1.21640 0.96114 0.96304 1.02388 1.22110 0.93451 0.98145 1.03561 1.21993 0.93880 0.92946 0.89637 0.89702 1.88012 1.82798 1.25383 1.31267 1.23019 0.98847 0.82431 1.03011 1.20332 0.78364 0.87859 0.82949 1.90671 1.46327 1.65824 1.37096 1.47277 1.58419 1.18236 1.08110 1.20908 0.95535 0.97058 0.87092 1.21907 0.98579 1.01908 0.99150 1.20299 0.91059 0.94469 0.90608 1.43955 1.23671 1.36466 1.28206 1.18824 0.88082 0.94483 1.38227 0.90063 1.25280 0.95875 0.97334 0.98579 1.69852 1.11454 1.34578 1.38923 0.87017 0.75514 0.87971 0.78101 1.21139 1.23260 1.20165 1.22625 0.93954 0.90990 0.94292 1.21638 0.95402 0.83587 1.01522 0.92694 0.92685 0.92723 0.91144 0.91920 0.90390 0.90425 0.93381 0.93761 0.89442 0.90733 0.91306 0.91091 0.92058 0.92656 0.94541 0.92812 0.94941 0.90627 0.90465 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.21 4.94 -26.73 -0.13 -1.34 16 3 C -0.13 -1.59 4.52 -26.73 -0.12 -1.71 16 4 C 0.08 1.21 1.83 -27.88 -0.05 1.16 16 5 H 0.09 1.25 6.60 -51.93 -0.34 0.91 16 6 O -0.36 -6.24 9.75 -54.27 -0.53 -6.77 16 7 C 0.02 0.31 10.41 101.05 1.05 1.37 16 8 C 0.52 10.10 6.92 -10.99 -0.08 10.03 16 9 O -0.52 -12.53 16.13 -13.48 -0.22 -12.74 16 10 N -0.59 -10.21 2.46 -176.43 -0.43 -10.64 16 11 C 0.12 1.55 5.08 -5.91 -0.03 1.52 16 12 C -0.17 -2.65 5.64 -29.13 -0.16 -2.81 16 13 C 0.16 3.01 5.63 -5.23 -0.03 2.98 16 14 N -0.60 -13.99 2.29 -171.78 -0.39 -14.38 16 15 C -0.27 -7.48 9.67 -15.06 -0.15 -7.62 16 16 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 17 C 0.03 0.85 5.17 -17.43 -0.09 0.76 16 18 N -0.91 -28.44 13.97 55.49 0.78 -27.66 16 19 Si 0.88 23.10 24.01 -169.99 -4.08 19.02 16 20 H -0.28 -7.34 6.42 56.52 0.36 -6.97 16 21 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 22 H -0.28 -6.98 6.86 56.52 0.39 -6.59 16 23 C 0.11 2.42 4.48 -1.56 -0.01 2.41 16 24 C 0.10 1.90 5.30 -4.39 -0.02 1.88 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.71 6.21 -51.93 -0.32 0.38 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.80 6.35 -51.93 -0.33 0.47 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.04 0.46 5.71 -51.93 -0.30 0.17 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.82 4.49 -51.93 -0.23 0.59 16 36 H 0.07 0.76 8.05 -51.93 -0.42 0.35 16 37 H 0.07 1.30 7.75 -51.93 -0.40 0.89 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.04 8.02 -51.93 -0.42 0.62 16 40 H 0.04 0.59 7.59 -51.93 -0.39 0.20 16 41 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 42 H 0.03 0.73 5.98 -51.93 -0.31 0.42 16 43 H 0.08 2.00 5.60 -51.93 -0.29 1.71 16 44 H 0.08 1.45 7.30 -51.93 -0.38 1.07 16 45 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -35.05 337.32 -6.77 -41.83 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.53 Total: -1.50 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 0.55 Total: 7.78 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.05 Total: -52.69 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.75 Total: -19.51 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.08 Total: 19.02 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.05 -6.77 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196725479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.830 kcal (2) G-P(sol) polarization free energy of solvation -35.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds