Wall clock time and date at job start Tue Mar 31 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47216 * 2 1 4 4 C 1.52998 * 109.47216 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46899 * 299.99619 * 3 2 1 6 6 C 1.52997 * 109.47000 * 300.00007 * 5 3 2 7 7 C 1.50700 * 109.47442 * 59.99784 * 3 2 1 8 8 O 1.21283 * 119.99803 * 239.99993 * 7 3 2 9 9 N 1.34777 * 119.99675 * 60.27868 * 7 3 2 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 3 11 11 H 1.09001 * 110.88924 * 31.12203 * 10 9 7 12 12 C 1.54903 * 111.00492 * 267.19203 * 10 9 7 13 13 N 1.47426 * 104.83511 * 204.91837 * 12 10 9 14 14 C 1.36935 * 125.65164 * 204.10938 * 13 12 10 15 15 H 1.08002 * 119.99922 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00081 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99940 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46949 * 59.99872 * 18 16 14 20 20 H 1.48501 * 109.46875 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47055 * 299.99841 * 18 16 14 22 22 C 1.47021 * 108.70152 * 24.12916 * 13 12 10 23 23 C 1.54322 * 107.27186 * 358.93969 * 22 13 12 24 24 H 1.08998 * 110.87100 * 96.23964 * 23 22 13 25 25 O 1.42905 * 110.72275 * 219.44506 * 23 22 13 26 26 H 1.09005 * 109.46870 * 300.00375 * 1 2 3 27 27 H 1.09004 * 109.47239 * 60.00312 * 1 2 3 28 28 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47009 * 239.99381 * 2 1 3 30 30 H 1.09004 * 109.47239 * 119.99688 * 2 1 3 31 31 H 1.09004 * 109.47239 * 299.99688 * 4 3 2 32 32 H 1.09005 * 109.47323 * 59.99908 * 4 3 2 33 33 H 1.09006 * 109.47458 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.46887 * 60.00679 * 5 3 2 35 35 H 1.08998 * 109.46846 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.46774 * 179.97438 * 6 5 3 37 37 H 1.08995 * 109.47672 * 299.99669 * 6 5 3 38 38 H 1.09001 * 109.47109 * 60.00906 * 6 5 3 39 39 H 0.97000 * 119.99894 * 359.71837 * 9 7 3 40 40 H 1.08998 * 110.36652 * 323.75794 * 12 10 9 41 41 H 1.08995 * 110.36765 * 86.08114 * 12 10 9 42 42 H 0.96997 * 119.99745 * 180.02562 * 17 16 14 43 43 H 1.09006 * 109.88340 * 239.52107 * 22 13 12 44 44 H 1.09001 * 109.88286 * 118.35749 * 22 13 12 45 45 H 0.96700 * 113.99548 * 293.52346 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 1.5300 2.1637 -1.2493 6 6 2.0401 1.4423 -2.4985 7 6 1.5377 2.1530 1.2304 8 8 0.8404 3.1391 1.1190 9 7 1.8679 1.6958 2.4545 10 6 1.3845 2.3900 3.6506 11 1 0.4137 2.8504 3.4670 12 6 2.4145 3.4394 4.1378 13 7 2.1385 3.5991 5.5772 14 6 2.4431 4.7011 6.3308 15 1 2.9283 5.5507 5.8735 16 6 2.1283 4.7262 7.6825 17 7 1.5375 3.6905 8.2400 18 14 2.5445 6.2292 8.7107 19 1 1.8451 7.4166 8.1573 20 1 2.1086 6.0060 10.1127 21 1 4.0113 6.4596 8.6796 22 6 1.4826 2.3789 6.0696 23 6 1.3224 1.4270 4.8656 24 1 2.1395 0.7066 4.8288 25 8 0.0614 0.7565 4.9154 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9285 -0.8891 33 1 3.9334 2.4702 0.0002 34 1 0.4400 2.1637 -1.2493 35 1 1.8930 3.1914 -1.2491 36 1 1.6764 1.9559 -3.3885 37 1 3.1301 1.4423 -2.4985 38 1 1.6766 0.4147 -2.4985 39 1 2.4255 0.9071 2.5435 40 1 3.4299 3.0740 3.9845 41 1 2.2680 4.3852 3.6163 42 1 1.3173 3.7082 9.1844 43 1 0.5034 2.6246 6.4808 44 1 2.1007 1.9086 6.8344 45 1 -0.0285 0.1426 5.6571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198841477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:01 Heat of formation + Delta-G solvation = -76.273226 kcal Electronic energy + Delta-G solvation = -23994.650999 eV Core-core repulsion = 20626.364855 eV Total energy + Delta-G solvation = -3368.286143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36594 -38.18643 -36.50507 -35.05100 -34.03352 -31.78813 -31.29895 -29.87457 -28.25893 -26.98922 -25.24906 -24.33555 -23.44945 -21.70424 -20.48377 -20.21981 -18.73879 -17.16707 -16.84281 -16.51139 -15.86206 -15.49528 -15.05701 -14.77310 -14.30390 -14.08007 -13.70875 -13.29654 -13.24146 -13.01369 -12.67190 -12.66300 -12.36885 -12.22659 -12.04450 -11.97712 -11.65295 -11.49018 -11.36275 -11.23384 -11.08199 -10.88850 -10.79149 -10.56702 -10.49805 -10.18253 -9.88599 -9.82861 -9.56823 -9.21718 -8.77071 -8.59554 -6.90638 -5.75489 -3.10020 2.90294 3.35776 3.40992 3.44546 3.46241 4.44164 4.50097 4.59404 4.64400 4.72670 5.02266 5.09372 5.21999 5.24602 5.29528 5.40392 5.44951 5.48619 5.54909 5.60171 5.66931 5.69003 5.73705 5.82490 5.84453 5.86592 5.99848 6.02972 6.10814 6.14558 6.17038 6.17450 6.39114 6.56502 6.64175 6.93712 7.33397 7.47229 7.71792 7.79470 8.12735 8.18367 8.50633 9.15853 9.75986 10.39286 11.36186 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.028633 B = 0.004035 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.659298 B = 6937.706645 C = 7495.547673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.079 4.079 4 C -0.143 4.143 5 C -0.102 4.102 6 C -0.155 4.155 7 C 0.524 3.476 8 O -0.539 6.539 9 N -0.714 5.714 10 C 0.138 3.862 11 H 0.104 0.896 12 C 0.131 3.869 13 N -0.600 5.600 14 C -0.230 4.230 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.924 5.924 18 Si 0.915 3.085 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.154 3.846 23 C 0.069 3.931 24 H 0.056 0.944 25 O -0.563 6.563 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.395 0.605 40 H 0.023 0.977 41 H 0.049 0.951 42 H 0.254 0.746 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 -10.947 -16.593 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.149 4.149 3 C -0.083 4.083 4 C -0.200 4.200 5 C -0.140 4.140 6 C -0.212 4.212 7 C 0.310 3.690 8 O -0.416 6.416 9 N -0.364 5.364 10 C 0.033 3.967 11 H 0.122 0.878 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.358 4.358 15 H 0.098 0.902 16 C -0.203 4.203 17 N -0.572 5.572 18 Si 0.745 3.255 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.028 3.972 23 C 0.008 3.992 24 H 0.074 0.926 25 O -0.368 6.368 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.229 0.771 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.633 -9.797 -16.966 19.659 hybrid contribution 0.628 0.028 1.306 1.450 sum 2.261 -9.769 -15.659 18.595 Atomic orbital electron populations 1.21867 0.95293 1.01684 1.02680 1.21612 0.96671 0.93984 1.02593 1.20883 0.96972 0.96411 0.93995 1.21914 0.92721 1.02866 1.02547 1.21384 1.01600 0.99159 0.91821 1.21912 1.01260 1.00624 0.97388 1.20434 0.79839 0.84302 0.84393 1.90699 1.37850 1.26325 1.86677 1.45921 1.53338 1.31527 1.05605 1.22234 0.99579 0.92709 0.82211 0.87831 1.21838 0.94794 0.96406 0.86653 1.44235 1.70198 1.15464 1.02871 1.19048 1.33207 0.93118 0.90394 0.90217 1.24809 1.00677 0.98094 0.96724 1.69914 1.46473 1.29251 1.11531 0.86147 0.77994 0.82008 0.79311 1.21030 1.21547 1.21115 1.21814 0.99032 0.85427 0.90888 1.23463 0.84794 0.93661 0.97238 0.92644 1.86473 1.36194 1.61252 1.52838 0.92283 0.92180 0.92611 0.90710 0.91656 0.92158 0.91242 0.91896 0.90937 0.91319 0.92731 0.92452 0.92447 0.77117 0.95949 0.93294 0.93617 0.92127 0.93393 0.77782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.31 37.16 0.35 -1.32 16 2 C -0.11 -1.03 4.54 -26.73 -0.12 -1.15 16 3 C -0.08 -0.88 0.43 -155.66 -0.07 -0.94 16 4 C -0.14 -1.32 8.01 37.16 0.30 -1.02 16 5 C -0.10 -1.12 3.93 -26.73 -0.10 -1.22 16 6 C -0.15 -1.24 9.21 37.16 0.34 -0.90 16 7 C 0.52 8.09 5.22 -10.98 -0.06 8.03 16 8 O -0.54 -10.65 15.62 5.55 0.09 -10.56 16 9 N -0.71 -10.77 4.98 -51.73 -0.26 -11.03 16 10 C 0.14 2.65 3.15 -65.78 -0.21 2.44 16 11 H 0.10 2.32 7.54 -51.93 -0.39 1.93 16 12 C 0.13 2.84 6.93 -2.53 -0.02 2.82 16 13 N -0.60 -15.53 3.39 -170.08 -0.58 -16.11 16 14 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 15 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 17 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 18 Si 0.92 22.21 29.55 -169.99 -5.02 17.18 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 C 0.15 3.68 5.15 -3.07 -0.02 3.67 16 23 C 0.07 1.28 3.98 -24.90 -0.10 1.18 16 24 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 25 O -0.56 -9.83 13.39 -35.23 -0.47 -10.31 16 26 H 0.06 0.79 7.22 -51.93 -0.37 0.41 16 27 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 30 H 0.06 0.57 7.57 -51.93 -0.39 0.18 16 31 H 0.06 0.51 7.55 -51.93 -0.39 0.12 16 32 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.88 6.39 -51.93 -0.33 0.55 16 35 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 38 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 39 H 0.39 4.84 7.40 -40.82 -0.30 4.54 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.06 1.64 7.29 -51.93 -0.38 1.26 16 44 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 45 H 0.38 4.98 9.12 45.56 0.42 5.40 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -33.02 346.87 -7.10 -40.12 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.70 Total: 7.15 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 0.05 Total: 4.67 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.26 Total: -53.48 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.38 Total: -20.87 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.02 -7.10 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198841477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.151 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds