Wall clock time and date at job start Tue Mar 31 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47216 * 2 1 4 4 C 1.52998 * 109.47216 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46899 * 299.99619 * 3 2 1 6 6 C 1.52997 * 109.47000 * 300.00007 * 5 3 2 7 7 C 1.50700 * 109.47442 * 59.99784 * 3 2 1 8 8 O 1.21283 * 119.99803 * 239.99993 * 7 3 2 9 9 N 1.34777 * 119.99675 * 60.27868 * 7 3 2 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 3 11 11 H 1.09001 * 110.88924 * 31.12203 * 10 9 7 12 12 C 1.54903 * 111.00492 * 267.19203 * 10 9 7 13 13 N 1.47426 * 104.83511 * 204.91837 * 12 10 9 14 14 C 1.36935 * 125.65164 * 204.10938 * 13 12 10 15 15 H 1.08002 * 119.99922 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00081 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99940 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46949 * 59.99872 * 18 16 14 20 20 H 1.48501 * 109.46875 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47055 * 299.99841 * 18 16 14 22 22 C 1.47021 * 108.70152 * 24.12916 * 13 12 10 23 23 C 1.54322 * 107.27186 * 358.93969 * 22 13 12 24 24 H 1.08998 * 110.87100 * 96.23964 * 23 22 13 25 25 O 1.42905 * 110.72275 * 219.44506 * 23 22 13 26 26 H 1.09005 * 109.46870 * 300.00375 * 1 2 3 27 27 H 1.09004 * 109.47239 * 60.00312 * 1 2 3 28 28 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47009 * 239.99381 * 2 1 3 30 30 H 1.09004 * 109.47239 * 119.99688 * 2 1 3 31 31 H 1.09004 * 109.47239 * 299.99688 * 4 3 2 32 32 H 1.09005 * 109.47323 * 59.99908 * 4 3 2 33 33 H 1.09006 * 109.47458 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.46887 * 60.00679 * 5 3 2 35 35 H 1.08998 * 109.46846 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.46774 * 179.97438 * 6 5 3 37 37 H 1.08995 * 109.47672 * 299.99669 * 6 5 3 38 38 H 1.09001 * 109.47109 * 60.00906 * 6 5 3 39 39 H 0.97000 * 119.99894 * 359.71837 * 9 7 3 40 40 H 1.08998 * 110.36652 * 323.75794 * 12 10 9 41 41 H 1.08995 * 110.36765 * 86.08114 * 12 10 9 42 42 H 0.96997 * 119.99745 * 180.02562 * 17 16 14 43 43 H 1.09006 * 109.88340 * 239.52107 * 22 13 12 44 44 H 1.09001 * 109.88286 * 118.35749 * 22 13 12 45 45 H 0.96700 * 113.99548 * 293.52346 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 1.5300 2.1637 -1.2493 6 6 2.0401 1.4423 -2.4985 7 6 1.5377 2.1530 1.2304 8 8 0.8404 3.1391 1.1190 9 7 1.8679 1.6958 2.4545 10 6 1.3845 2.3900 3.6506 11 1 0.4137 2.8504 3.4670 12 6 2.4145 3.4394 4.1378 13 7 2.1385 3.5991 5.5772 14 6 2.4431 4.7011 6.3308 15 1 2.9283 5.5507 5.8735 16 6 2.1283 4.7262 7.6825 17 7 1.5375 3.6905 8.2400 18 14 2.5445 6.2292 8.7107 19 1 1.8451 7.4166 8.1573 20 1 2.1086 6.0060 10.1127 21 1 4.0113 6.4596 8.6796 22 6 1.4826 2.3789 6.0696 23 6 1.3224 1.4270 4.8656 24 1 2.1395 0.7066 4.8288 25 8 0.0614 0.7565 4.9154 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9285 -0.8891 33 1 3.9334 2.4702 0.0002 34 1 0.4400 2.1637 -1.2493 35 1 1.8930 3.1914 -1.2491 36 1 1.6764 1.9559 -3.3885 37 1 3.1301 1.4423 -2.4985 38 1 1.6766 0.4147 -2.4985 39 1 2.4255 0.9071 2.5435 40 1 3.4299 3.0740 3.9845 41 1 2.2680 4.3852 3.6163 42 1 1.3173 3.7082 9.1844 43 1 0.5034 2.6246 6.4808 44 1 2.1007 1.9086 6.8344 45 1 -0.0285 0.1426 5.6571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198841477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:01 Heat of formation + Delta-G solvation = -101.528675 kcal Electronic energy + Delta-G solvation = -23995.746157 eV Core-core repulsion = 20626.364855 eV Total energy + Delta-G solvation = -3369.381302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57251 -39.74284 -37.61669 -36.69639 -35.60129 -33.64871 -32.13847 -30.88443 -29.93745 -28.70374 -26.52822 -25.84267 -24.22473 -23.01389 -22.24517 -21.81146 -19.88338 -19.01871 -18.30262 -17.70513 -17.39497 -16.66864 -16.48143 -15.99728 -15.81911 -15.63592 -14.86387 -14.74731 -14.50809 -14.38066 -14.03135 -13.80230 -13.75099 -13.47477 -13.18141 -13.12934 -12.94502 -12.77907 -12.72068 -12.71217 -12.47711 -12.17057 -12.13910 -11.90153 -11.86272 -11.57268 -11.36779 -11.27512 -11.05658 -10.78305 -10.58709 -10.13603 -8.99178 -7.90405 -5.28033 1.44394 1.48157 1.54230 1.67376 2.08553 2.46914 3.11122 3.30114 3.53473 3.58756 3.70038 3.86506 3.91066 4.03490 4.12055 4.21850 4.34880 4.42150 4.50543 4.53851 4.55458 4.69681 4.74688 4.78186 4.82487 4.96859 4.97065 5.03319 5.09406 5.15714 5.25197 5.31673 5.32549 5.34313 5.41706 5.42936 5.47594 5.63037 5.64058 6.11403 6.57168 6.85090 7.02712 7.28870 7.67115 8.29768 9.19052 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.028633 B = 0.004035 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.659298 B = 6937.706645 C = 7495.547673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.103 4.103 6 C -0.147 4.147 7 C 0.519 3.481 8 O -0.590 6.590 9 N -0.700 5.700 10 C 0.153 3.847 11 H 0.066 0.934 12 C 0.132 3.868 13 N -0.622 5.622 14 C -0.252 4.252 15 H 0.080 0.920 16 C -0.059 4.059 17 N -0.948 5.948 18 Si 0.982 3.018 19 H -0.281 1.281 20 H -0.290 1.290 21 H -0.273 1.273 22 C 0.162 3.838 23 C 0.092 3.908 24 H 0.095 0.905 25 O -0.569 6.569 26 H 0.022 0.978 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.414 0.586 40 H 0.044 0.956 41 H 0.029 0.971 42 H 0.250 0.750 43 H 0.019 0.981 44 H 0.027 0.973 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.965 -12.992 -18.140 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.074 4.074 4 C -0.199 4.199 5 C -0.141 4.141 6 C -0.204 4.204 7 C 0.308 3.692 8 O -0.469 6.469 9 N -0.351 5.351 10 C 0.046 3.954 11 H 0.084 0.916 12 C 0.005 3.995 13 N -0.350 5.350 14 C -0.381 4.381 15 H 0.098 0.902 16 C -0.253 4.253 17 N -0.596 5.596 18 Si 0.809 3.191 19 H -0.207 1.207 20 H -0.216 1.216 21 H -0.199 1.199 22 C 0.036 3.964 23 C 0.032 3.968 24 H 0.113 0.887 25 O -0.377 6.377 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.251 0.749 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.037 0.963 44 H 0.045 0.955 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 3.341 -11.893 -18.537 22.276 hybrid contribution 0.042 0.690 1.757 1.888 sum 3.383 -11.203 -16.780 20.458 Atomic orbital electron populations 1.21864 0.96574 1.02210 1.00864 1.21674 0.95438 0.92579 1.04747 1.20930 0.98401 0.96990 0.91094 1.21963 0.90666 1.02670 1.04643 1.21381 1.00510 0.98619 0.93579 1.21875 1.02060 1.00936 0.95556 1.21414 0.78634 0.83681 0.85490 1.90679 1.40091 1.28804 1.87365 1.45706 1.53351 1.31734 1.04317 1.21690 0.97111 0.92561 0.84081 0.91614 1.21918 0.96440 0.96556 0.84548 1.44508 1.70339 1.15622 1.04509 1.19415 1.33371 0.94140 0.91178 0.90182 1.25655 1.00823 1.01003 0.97795 1.70122 1.47200 1.30868 1.11375 0.85119 0.78176 0.78519 0.77296 1.20712 1.21566 1.19896 1.21623 0.96128 0.85868 0.92782 1.23156 0.86530 0.93216 0.93919 0.88719 1.86443 1.35680 1.61593 1.53944 0.95873 0.92310 0.90844 0.87584 0.90398 0.90919 0.88339 0.93292 0.92835 0.93511 0.92388 0.91040 0.90933 0.74860 0.93809 0.95237 0.94091 0.96257 0.95456 0.75428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.31 71.98 0.67 -2.38 16 2 C -0.11 -1.61 4.54 30.59 0.14 -1.47 16 3 C -0.07 -1.43 0.43 -52.93 -0.02 -1.45 16 4 C -0.14 -2.15 8.01 71.98 0.58 -1.57 16 5 C -0.10 -2.16 3.93 30.59 0.12 -2.04 16 6 C -0.15 -1.92 9.21 71.98 0.66 -1.25 16 7 C 0.52 15.90 5.22 87.66 0.46 16.36 16 8 O -0.59 -24.29 15.62 -3.04 -0.05 -24.34 16 9 N -0.70 -20.30 4.98 -435.97 -2.17 -22.48 16 10 C 0.15 5.89 3.15 46.38 0.15 6.04 16 11 H 0.07 3.08 7.54 -2.39 -0.02 3.06 16 12 C 0.13 5.82 6.93 86.85 0.60 6.42 16 13 N -0.62 -33.02 3.39 -692.00 -2.35 -35.37 16 14 C -0.25 -14.59 10.28 84.03 0.86 -13.73 16 15 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 16 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 17 N -0.95 -56.62 10.31 21.65 0.22 -56.40 16 18 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 C 0.16 7.93 5.15 86.73 0.45 8.38 16 23 C 0.09 3.35 3.98 31.78 0.13 3.48 16 24 H 0.10 2.78 8.00 -2.39 -0.02 2.76 16 25 O -0.57 -19.33 13.39 -148.98 -1.99 -21.32 16 26 H 0.02 0.60 7.22 -2.38 -0.02 0.58 16 27 H 0.06 1.13 6.43 -2.38 -0.02 1.12 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 1.03 6.43 -2.39 -0.02 1.01 16 30 H 0.08 1.02 7.57 -2.38 -0.02 1.00 16 31 H 0.07 0.93 7.55 -2.38 -0.02 0.92 16 32 H 0.10 0.96 6.43 -2.38 -0.02 0.94 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.05 1.31 6.39 -2.39 -0.02 1.29 16 35 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.07 0.75 6.43 -2.39 -0.02 0.73 16 38 H 0.07 0.74 6.43 -2.39 -0.02 0.73 16 39 H 0.41 8.88 7.40 -92.71 -0.69 8.20 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 43 H 0.02 1.09 7.29 -2.38 -0.02 1.07 16 44 H 0.03 1.43 7.51 -2.39 -0.02 1.42 16 45 H 0.40 9.90 9.12 -74.06 -0.68 9.22 16 Total: -1.00 -75.94 346.87 0.57 -75.37 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -0.37 Total: 22.46 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 5.25 Total: 13.83 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -4.30 Total: -114.25 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -2.04 Total: -45.66 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -75.94 0.57 -75.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198841477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.161 kcal (2) G-P(sol) polarization free energy of solvation -75.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds