Wall clock time and date at job start Tue Mar 31 2020 03:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47452 * 2 1 4 4 C 1.52998 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47199 * 54.85092 * 4 3 2 6 6 O 1.42901 * 109.46866 * 294.85033 * 4 3 2 7 7 C 1.42903 * 113.99739 * 150.00154 * 6 4 3 8 8 C 1.50706 * 109.46830 * 174.85316 * 4 3 2 9 9 O 1.21280 * 119.99796 * 112.43912 * 8 4 3 10 10 N 1.34768 * 119.99793 * 292.42894 * 8 4 3 11 11 C 1.46926 * 120.63546 * 355.43417 * 10 8 4 12 12 C 1.53617 * 108.54636 * 126.36539 * 11 10 8 13 13 C 1.53036 * 109.24224 * 54.85680 * 12 11 10 14 14 N 1.46503 * 109.46164 * 178.49219 * 13 12 11 15 15 C 1.36933 * 119.99861 * 275.06754 * 14 13 12 16 16 H 1.08008 * 120.00165 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00424 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99626 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00550 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47135 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47389 * 119.99627 * 19 17 15 22 22 H 1.48500 * 109.47334 * 239.99680 * 19 17 15 23 23 C 1.53043 * 109.54016 * 298.51153 * 13 12 11 24 24 C 1.46932 * 120.62638 * 175.71116 * 10 8 4 25 25 H 1.09005 * 109.46750 * 59.99562 * 1 2 3 26 26 H 1.08990 * 109.47592 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47017 * 300.00538 * 1 2 3 28 28 H 1.09000 * 109.46503 * 239.99952 * 2 1 3 29 29 H 1.08995 * 109.46804 * 120.00344 * 2 1 3 30 30 H 1.09002 * 109.46754 * 59.99921 * 3 2 1 31 31 H 1.09007 * 109.46938 * 300.00480 * 3 2 1 32 32 H 1.09000 * 109.46832 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47171 * 300.00065 * 7 6 4 34 34 H 1.08996 * 109.46841 * 59.99852 * 7 6 4 35 35 H 1.09005 * 109.58210 * 246.20401 * 11 10 8 36 36 H 1.09002 * 109.58496 * 6.62204 * 11 10 8 37 37 H 1.08996 * 109.63478 * 294.86714 * 12 11 10 38 38 H 1.08997 * 109.43230 * 174.72177 * 12 11 10 39 39 H 1.09003 * 109.46414 * 58.53197 * 13 12 11 40 40 H 0.96998 * 120.00226 * 95.06757 * 14 13 12 41 41 H 0.96998 * 120.00687 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.49860 * 301.41463 * 23 13 12 43 43 H 1.08994 * 109.52544 * 181.33233 * 23 13 12 44 44 H 1.08992 * 109.58764 * 353.37358 * 24 10 8 45 45 H 1.09002 * 109.58852 * 113.66202 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8509 -0.8412 6 8 4.0468 0.8760 1.2216 7 6 5.3064 0.2117 1.1020 8 6 4.0724 2.8575 -0.1281 9 8 4.6529 3.3808 0.7993 10 7 3.8766 3.5415 -1.2727 11 6 3.2649 2.8899 -2.4390 12 6 2.0663 3.7342 -2.8975 13 6 2.5288 5.1707 -3.1514 14 7 1.3968 5.9718 -3.6236 15 6 1.0709 5.9795 -4.9535 16 1 1.6487 5.3953 -5.6545 17 6 -0.0014 6.7389 -5.4011 18 7 -0.7053 7.4512 -4.5471 19 14 -0.4464 6.7488 -7.2153 20 1 0.4924 5.8717 -7.9600 21 1 -1.8339 6.2485 -7.3874 22 1 -0.3510 8.1344 -7.7408 23 6 3.0714 5.7709 -1.8523 24 6 4.2765 4.9513 -1.3801 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.5985 -0.1908 2.0719 33 1 5.2210 -0.6022 0.3820 34 1 6.0602 0.9211 0.7606 35 1 3.9963 2.8209 -3.2443 36 1 2.9262 1.8911 -2.1636 37 1 1.2985 3.7306 -2.1239 38 1 1.6585 3.3154 -3.8175 39 1 3.3141 5.1712 -3.9074 40 1 0.8780 6.4967 -2.9941 41 1 -1.4548 7.9816 -4.8596 42 1 2.2942 5.7481 -1.0885 43 1 3.3789 6.8017 -2.0278 44 1 4.6053 5.3130 -0.4059 45 1 5.0902 5.0466 -2.0990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201941156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:22 Heat of formation + Delta-G solvation = -80.896228 kcal Electronic energy + Delta-G solvation = -23743.211086 eV Core-core repulsion = 20374.724475 eV Total energy + Delta-G solvation = -3368.486612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47347 -38.15746 -36.97193 -35.09087 -34.36051 -32.15431 -31.13467 -29.86632 -29.08474 -26.54537 -25.45908 -24.14243 -23.04861 -22.34426 -21.32418 -20.39441 -18.89703 -17.62452 -17.09052 -16.83845 -15.86132 -15.52126 -15.08849 -14.78411 -14.60071 -14.49382 -13.81215 -13.71695 -13.58778 -13.45254 -13.28972 -13.14795 -12.40104 -12.25268 -12.20933 -11.94310 -11.65383 -11.52100 -11.24302 -11.10928 -11.01055 -10.92159 -10.85966 -10.70981 -10.59009 -10.49940 -10.23055 -9.85123 -9.71415 -9.21476 -8.94580 -8.51431 -7.01752 -5.81189 -3.10634 2.60217 2.97254 3.39551 3.45066 3.47583 3.62378 4.37087 4.54011 4.65653 4.70028 4.95242 5.00759 5.02065 5.15225 5.23385 5.28725 5.30849 5.37331 5.44060 5.49657 5.50183 5.52757 5.56894 5.67475 5.70502 5.76780 5.90892 5.95057 6.02555 6.06891 6.18038 6.23479 6.32642 6.35488 6.47452 6.57542 6.83066 6.88669 7.00076 7.48582 7.65197 8.22632 8.36889 9.48314 10.05654 10.40305 11.41359 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020967 B = 0.004064 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.139792 B = 6887.478557 C = 7696.335262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.121 4.121 4 C 0.077 3.923 5 H 0.083 0.917 6 O -0.357 6.357 7 C 0.030 3.970 8 C 0.491 3.509 9 O -0.535 6.535 10 N -0.604 5.604 11 C 0.099 3.901 12 C -0.151 4.151 13 C 0.179 3.821 14 N -0.724 5.724 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.139 4.139 24 C 0.116 3.884 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 -15.550 7.914 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.159 4.159 4 C 0.015 3.985 5 H 0.101 0.899 6 O -0.274 6.274 7 C -0.067 4.067 8 C 0.278 3.722 9 O -0.412 6.412 10 N -0.339 5.339 11 C -0.024 4.024 12 C -0.192 4.192 13 C 0.069 3.931 14 N -0.364 5.364 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.579 5.579 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.178 4.178 24 C -0.007 4.007 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.046 -15.264 8.398 19.630 hybrid contribution -0.357 0.224 -1.158 1.233 sum 8.689 -15.040 7.240 18.818 Atomic orbital electron populations 1.21773 0.95394 1.01634 1.02308 1.21463 0.96179 0.95686 1.02291 1.21867 0.90602 0.98855 1.04531 1.22103 0.96398 0.91212 0.88756 0.89921 1.87988 1.36526 1.72305 1.30553 1.22836 0.85670 0.95612 1.02577 1.21327 0.79658 0.89062 0.82194 1.90673 1.41742 1.70145 1.38621 1.48225 1.60802 1.12253 1.12626 1.22113 0.96308 0.96522 0.87441 1.22770 0.96112 0.98705 1.01608 1.20154 0.90857 0.89240 0.92853 1.42444 1.33397 1.54021 1.06574 1.19272 1.10312 1.22976 0.84605 0.91118 1.24748 0.98546 0.99904 0.97657 1.69668 1.21853 1.33485 1.32940 0.86146 0.77945 0.77258 0.84994 1.20556 1.21870 1.21877 1.22205 0.97212 0.99511 0.98826 1.21612 0.96992 0.79763 1.02311 0.92329 0.92728 0.92600 0.92135 0.91264 0.90329 0.88968 0.89354 0.94052 0.93845 0.91314 0.90251 0.91977 0.90569 0.93417 0.78241 0.93517 0.91814 0.90534 0.89492 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.09 5.83 -26.73 -0.16 -1.25 16 3 C -0.12 -1.34 4.47 -26.73 -0.12 -1.46 16 4 C 0.08 0.91 1.67 -27.88 -0.05 0.87 16 5 H 0.08 0.79 6.98 -51.93 -0.36 0.43 16 6 O -0.36 -4.58 9.44 -55.03 -0.52 -5.10 16 7 C 0.03 0.29 10.81 101.05 1.09 1.38 16 8 C 0.49 7.30 7.02 -10.99 -0.08 7.22 16 9 O -0.54 -9.89 15.95 -14.24 -0.23 -10.12 16 10 N -0.60 -8.38 2.97 -172.50 -0.51 -8.89 16 11 C 0.10 1.22 5.50 -3.49 -0.02 1.20 16 12 C -0.15 -2.38 5.49 -26.39 -0.14 -2.52 16 13 C 0.18 3.31 2.73 -67.89 -0.19 3.13 16 14 N -0.72 -17.37 5.12 -53.38 -0.27 -17.64 16 15 C -0.24 -6.41 9.93 -15.06 -0.15 -6.55 16 16 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 19 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 C -0.14 -2.26 5.55 -26.61 -0.15 -2.40 16 24 C 0.12 1.67 6.42 -3.70 -0.02 1.64 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.65 7.83 -51.93 -0.41 0.25 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.03 5.13 -51.93 -0.27 0.76 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.80 4.55 -51.93 -0.24 0.56 16 37 H 0.06 1.03 7.55 -51.93 -0.39 0.64 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.09 1.32 7.03 -51.93 -0.37 0.95 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -31.87 355.10 -7.99 -39.86 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -7.81 Total: 6.83 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 0.30 Total: -0.21 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.06 Total: -53.40 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.75 Total: -15.22 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.87 -7.99 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201941156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.039 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds