Wall clock time and date at job start Tue Mar 31 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47452 * 2 1 4 4 C 1.52998 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47199 * 54.85092 * 4 3 2 6 6 O 1.42901 * 109.46866 * 294.85033 * 4 3 2 7 7 C 1.42903 * 113.99739 * 150.00154 * 6 4 3 8 8 C 1.50706 * 109.46830 * 174.85316 * 4 3 2 9 9 O 1.21280 * 119.99796 * 112.43912 * 8 4 3 10 10 N 1.34768 * 119.99793 * 292.42894 * 8 4 3 11 11 C 1.46926 * 120.63546 * 355.43417 * 10 8 4 12 12 C 1.53617 * 108.54636 * 126.36539 * 11 10 8 13 13 C 1.53036 * 109.24224 * 54.85680 * 12 11 10 14 14 N 1.46503 * 109.46164 * 178.49219 * 13 12 11 15 15 C 1.36933 * 119.99861 * 275.06754 * 14 13 12 16 16 H 1.08008 * 120.00165 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00424 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99626 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00550 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47135 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47389 * 119.99627 * 19 17 15 22 22 H 1.48500 * 109.47334 * 239.99680 * 19 17 15 23 23 C 1.53043 * 109.54016 * 298.51153 * 13 12 11 24 24 C 1.46932 * 120.62638 * 175.71116 * 10 8 4 25 25 H 1.09005 * 109.46750 * 59.99562 * 1 2 3 26 26 H 1.08990 * 109.47592 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47017 * 300.00538 * 1 2 3 28 28 H 1.09000 * 109.46503 * 239.99952 * 2 1 3 29 29 H 1.08995 * 109.46804 * 120.00344 * 2 1 3 30 30 H 1.09002 * 109.46754 * 59.99921 * 3 2 1 31 31 H 1.09007 * 109.46938 * 300.00480 * 3 2 1 32 32 H 1.09000 * 109.46832 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47171 * 300.00065 * 7 6 4 34 34 H 1.08996 * 109.46841 * 59.99852 * 7 6 4 35 35 H 1.09005 * 109.58210 * 246.20401 * 11 10 8 36 36 H 1.09002 * 109.58496 * 6.62204 * 11 10 8 37 37 H 1.08996 * 109.63478 * 294.86714 * 12 11 10 38 38 H 1.08997 * 109.43230 * 174.72177 * 12 11 10 39 39 H 1.09003 * 109.46414 * 58.53197 * 13 12 11 40 40 H 0.96998 * 120.00226 * 95.06757 * 14 13 12 41 41 H 0.96998 * 120.00687 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.49860 * 301.41463 * 23 13 12 43 43 H 1.08994 * 109.52544 * 181.33233 * 23 13 12 44 44 H 1.08992 * 109.58764 * 353.37358 * 24 10 8 45 45 H 1.09002 * 109.58852 * 113.66202 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8509 -0.8412 6 8 4.0468 0.8760 1.2216 7 6 5.3064 0.2117 1.1020 8 6 4.0724 2.8575 -0.1281 9 8 4.6529 3.3808 0.7993 10 7 3.8766 3.5415 -1.2727 11 6 3.2649 2.8899 -2.4390 12 6 2.0663 3.7342 -2.8975 13 6 2.5288 5.1707 -3.1514 14 7 1.3968 5.9718 -3.6236 15 6 1.0709 5.9795 -4.9535 16 1 1.6487 5.3953 -5.6545 17 6 -0.0014 6.7389 -5.4011 18 7 -0.7053 7.4512 -4.5471 19 14 -0.4464 6.7488 -7.2153 20 1 0.4924 5.8717 -7.9600 21 1 -1.8339 6.2485 -7.3874 22 1 -0.3510 8.1344 -7.7408 23 6 3.0714 5.7709 -1.8523 24 6 4.2765 4.9513 -1.3801 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.5985 -0.1908 2.0719 33 1 5.2210 -0.6022 0.3820 34 1 6.0602 0.9211 0.7606 35 1 3.9963 2.8209 -3.2443 36 1 2.9262 1.8911 -2.1636 37 1 1.2985 3.7306 -2.1239 38 1 1.6585 3.3154 -3.8175 39 1 3.3141 5.1712 -3.9074 40 1 0.8780 6.4967 -2.9941 41 1 -1.4548 7.9816 -4.8596 42 1 2.2942 5.7481 -1.0885 43 1 3.3789 6.8017 -2.0278 44 1 4.6053 5.3130 -0.4059 45 1 5.0902 5.0466 -2.0990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201941156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:21 Heat of formation + Delta-G solvation = -100.806187 kcal Electronic energy + Delta-G solvation = -23744.074447 eV Core-core repulsion = 20374.724475 eV Total energy + Delta-G solvation = -3369.349972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59468 -39.27389 -38.19183 -36.30956 -35.60630 -33.83548 -32.36814 -31.15743 -30.42949 -27.32280 -26.83841 -25.48573 -24.38896 -23.71358 -22.12362 -21.71868 -20.14366 -19.04920 -18.65034 -17.82760 -16.91539 -16.73633 -16.52966 -15.87453 -15.62590 -15.54869 -15.40104 -15.30724 -14.86533 -14.61058 -14.25939 -14.20626 -13.76345 -13.38676 -13.24397 -13.10589 -12.91750 -12.86120 -12.61521 -12.34777 -12.20526 -12.09274 -12.03571 -12.00487 -11.93920 -11.69169 -11.50783 -11.47827 -11.29255 -10.90334 -10.26003 -9.70936 -8.99276 -7.91553 -5.20259 1.46553 1.49855 1.50362 1.59990 1.89608 2.58345 2.76937 3.35827 3.42524 3.75668 3.83322 3.85356 3.92283 4.04419 4.16424 4.19981 4.27683 4.34536 4.40260 4.46718 4.53428 4.62550 4.65153 4.71861 4.73701 4.81794 4.83629 4.85372 4.93630 5.02505 5.03514 5.07837 5.25957 5.29822 5.34326 5.48224 5.50830 5.55706 5.63208 6.02148 6.29941 6.37997 7.08809 7.36228 8.11948 8.34721 9.32387 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.020967 B = 0.004064 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.139792 B = 6887.478557 C = 7696.335262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.118 4.118 4 C 0.081 3.919 5 H 0.116 0.884 6 O -0.379 6.379 7 C 0.024 3.976 8 C 0.486 3.514 9 O -0.578 6.578 10 N -0.603 5.603 11 C 0.107 3.893 12 C -0.140 4.140 13 C 0.173 3.827 14 N -0.739 5.739 15 C -0.232 4.232 16 H 0.081 0.919 17 C -0.078 4.078 18 N -0.973 5.973 19 Si 0.969 3.031 20 H -0.262 1.262 21 H -0.296 1.296 22 H -0.299 1.299 23 C -0.127 4.127 24 C 0.122 3.878 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.049 -18.135 6.771 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.156 4.156 4 C 0.020 3.980 5 H 0.134 0.866 6 O -0.297 6.297 7 C -0.072 4.072 8 C 0.275 3.725 9 O -0.457 6.457 10 N -0.337 5.337 11 C -0.015 4.015 12 C -0.181 4.181 13 C 0.065 3.935 14 N -0.378 5.378 15 C -0.364 4.364 16 H 0.099 0.901 17 C -0.270 4.270 18 N -0.624 5.624 19 Si 0.799 3.201 20 H -0.186 1.186 21 H -0.224 1.224 22 H -0.226 1.226 23 C -0.166 4.166 24 C -0.001 4.001 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.201 0.799 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.288 -17.904 7.241 21.882 hybrid contribution -0.661 1.016 -0.735 1.418 sum 9.628 -16.888 6.505 20.499 Atomic orbital electron populations 1.21784 0.95485 1.02304 1.01655 1.21430 0.96016 0.94269 1.03228 1.21847 0.90221 1.00074 1.03413 1.22191 0.96535 0.89494 0.89774 0.86638 1.87969 1.37816 1.72549 1.31325 1.23031 0.84133 0.95866 1.04193 1.22000 0.78794 0.90251 0.81498 1.90652 1.43756 1.71356 1.39978 1.48301 1.60383 1.11941 1.13037 1.22186 0.95162 0.96809 0.87388 1.22536 0.97318 0.97159 1.01097 1.20416 0.89271 0.90239 0.93586 1.42680 1.34598 1.54815 1.05677 1.19680 1.09440 1.21438 0.85857 0.90087 1.25532 0.99273 1.00595 1.01573 1.69829 1.22666 1.35121 1.34758 0.85125 0.77519 0.76908 0.80545 1.18597 1.22371 1.22613 1.22054 0.97563 0.99647 0.97375 1.21506 0.96342 0.80034 1.02244 0.92809 0.91397 0.93486 0.90055 0.91383 0.92538 0.89081 0.88212 0.91240 0.95031 0.89049 0.87286 0.93238 0.91086 0.93090 0.79919 0.94250 0.93342 0.91065 0.90407 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 71.98 0.71 -1.80 16 2 C -0.11 -1.76 5.83 30.59 0.18 -1.58 16 3 C -0.12 -2.39 4.47 30.59 0.14 -2.26 16 4 C 0.08 1.73 1.67 29.85 0.05 1.78 16 5 H 0.12 1.69 6.98 -2.39 -0.02 1.68 16 6 O -0.38 -9.04 9.44 -130.05 -1.23 -10.27 16 7 C 0.02 0.40 10.81 113.37 1.23 1.63 16 8 C 0.49 13.75 7.02 87.66 0.62 14.36 16 9 O -0.58 -21.21 15.95 15.90 0.25 -20.95 16 10 N -0.60 -15.53 2.97 -818.05 -2.43 -17.95 16 11 C 0.11 2.27 5.50 86.51 0.48 2.75 16 12 C -0.14 -4.18 5.49 30.81 0.17 -4.01 16 13 C 0.17 6.24 2.73 45.02 0.12 6.36 16 14 N -0.74 -35.60 5.12 -322.80 -1.65 -37.25 16 15 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 16 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 18 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 19 Si 0.97 44.86 29.55 68.60 2.03 46.88 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 21 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 23 C -0.13 -4.13 5.55 30.67 0.17 -3.96 16 24 C 0.12 3.36 6.42 86.36 0.55 3.92 16 25 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.11 7.83 -2.39 -0.02 1.10 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.85 5.13 -2.38 -0.01 1.84 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.11 1.73 4.55 -2.39 -0.01 1.72 16 37 H 0.05 1.60 7.55 -2.39 -0.02 1.58 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 40 H 0.37 19.70 7.80 -92.71 -0.72 18.97 16 41 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 44 H 0.08 2.34 7.03 -2.39 -0.02 2.32 16 45 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -69.87 355.10 3.21 -66.66 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.24 Total: 29.58 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 5.71 Total: 1.88 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.80 Total: -113.78 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.97 Total: -31.22 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -69.87 3.21 -66.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201941156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.146 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds