Wall clock time and date at job start Tue Mar 31 2020 03:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 120.00057 * 2 1 4 4 O 1.21587 * 120.00036 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99809 * 179.97438 * 3 2 1 6 6 C 1.46497 * 119.99728 * 179.97438 * 5 3 2 7 7 C 1.50706 * 109.47032 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00064 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99786 * 180.02562 * 7 6 5 10 10 C 1.46922 * 120.63238 * 359.97438 * 9 7 6 11 11 C 1.53196 * 108.77606 * 233.63495 * 10 9 7 12 12 C 1.53037 * 109.31040 * 305.36550 * 11 10 9 13 13 C 1.53039 * 109.54101 * 61.36876 * 12 11 10 14 14 H 1.08993 * 109.52527 * 58.59948 * 13 12 11 15 15 N 1.46498 * 109.49983 * 178.68190 * 13 12 11 16 16 C 1.36938 * 120.00090 * 204.83129 * 15 13 12 17 17 H 1.08000 * 119.99828 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00051 * 179.97438 * 16 15 13 19 19 N 1.31620 * 120.00103 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00096 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46685 * 89.99874 * 20 18 16 22 22 H 1.48499 * 109.47223 * 209.99846 * 20 18 16 23 23 H 1.48499 * 109.47033 * 330.00265 * 20 18 16 24 24 C 1.46931 * 120.62714 * 180.02562 * 9 7 6 25 25 H 1.08997 * 109.47061 * 59.99975 * 1 2 3 26 26 H 1.09003 * 109.47131 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47118 * 300.00090 * 1 2 3 28 28 H 0.97004 * 119.99859 * 179.97438 * 2 1 3 29 29 H 0.97004 * 120.00107 * 0.02562 * 5 3 2 30 30 H 1.09007 * 109.47117 * 60.00486 * 6 5 3 31 31 H 1.09001 * 109.47579 * 300.00184 * 6 5 3 32 32 H 1.08999 * 109.58543 * 113.84583 * 10 9 7 33 33 H 1.09003 * 109.70593 * 353.48777 * 10 9 7 34 34 H 1.08999 * 109.50112 * 65.32084 * 11 10 9 35 35 H 1.09004 * 109.49641 * 185.41325 * 11 10 9 36 36 H 1.09000 * 109.46060 * 181.39134 * 12 11 10 37 37 H 1.09006 * 109.46385 * 301.34352 * 12 11 10 38 38 H 0.97001 * 120.00004 * 24.84077 * 15 13 12 39 39 H 0.97000 * 120.00209 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.57916 * 246.14924 * 24 9 7 41 41 H 1.08992 * 109.58752 * 6.43130 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.2192 2.4358 0.0000 7 6 5.7009 2.1604 0.0001 8 8 6.1051 1.0170 0.0001 9 7 6.5766 3.1849 0.0001 10 6 6.1022 4.5754 -0.0005 11 6 6.7574 5.3194 -1.1684 12 6 8.2778 5.1741 -1.0719 13 6 8.6577 3.6947 -1.1677 14 1 8.2933 3.2854 -2.1099 15 7 10.1151 3.5592 -1.1069 16 6 10.7249 2.4658 -1.6617 17 1 10.1314 1.7036 -2.1446 18 6 12.1058 2.3376 -1.6045 19 7 12.6920 1.2870 -2.1382 20 14 13.1325 3.6564 -0.7699 21 1 13.2907 3.3238 0.6687 22 1 14.4696 3.7233 -1.4125 23 1 12.4532 4.9702 -0.9025 24 6 8.0241 2.9322 -0.0003 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8401 0.0004 29 1 3.9717 0.3270 0.0005 30 1 3.9555 3.0080 0.8896 31 1 3.9562 3.0069 -0.8905 32 1 6.3767 5.0555 0.9388 33 1 5.0186 4.5939 -0.1173 34 1 6.4104 4.8952 -2.1106 35 1 6.4892 6.3750 -1.1236 36 1 8.7476 5.7233 -1.8878 37 1 8.6213 5.5762 -0.1187 38 1 10.6482 4.2439 -0.6734 39 1 13.6570 1.1972 -2.0979 40 1 8.4555 3.2783 0.9390 41 1 8.2086 1.8643 -0.1157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208278881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:49 Heat of formation + Delta-G solvation = -45.427685 kcal Electronic energy + Delta-G solvation = -22613.405685 eV Core-core repulsion = 19142.916761 eV Total energy + Delta-G solvation = -3470.488924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51631 -39.68139 -37.56408 -34.92523 -34.69409 -34.48060 -32.42987 -31.38759 -29.52543 -28.21202 -26.22666 -24.69421 -23.75408 -21.80341 -21.14388 -20.48341 -19.38974 -18.65942 -17.59651 -16.85880 -16.68043 -16.16042 -15.56106 -15.28027 -14.75801 -14.56015 -14.33565 -14.22529 -14.16550 -13.59738 -13.41708 -13.03415 -12.95137 -12.62680 -12.53520 -12.50834 -12.30071 -11.68230 -11.27043 -10.96517 -10.77730 -10.70773 -10.49991 -10.32367 -9.95264 -9.82663 -9.61750 -9.57570 -9.16949 -9.10014 -8.49857 -7.34044 -5.80579 -3.18353 2.37070 2.58165 3.00233 3.11219 3.34129 3.36515 3.42610 4.08413 4.34486 4.54751 4.74226 4.90554 4.95381 5.11557 5.16615 5.18496 5.25988 5.31377 5.40074 5.45539 5.50371 5.66687 5.74195 5.84205 5.96592 6.03613 6.14582 6.16737 6.20462 6.32969 6.53401 6.66696 6.67525 6.83722 7.45502 7.77897 7.94650 8.14617 8.36947 8.38057 9.15010 9.86666 10.04906 11.37359 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029274 B = 0.003349 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.250787 B = 8359.327144 C = 9070.583462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.751 5.751 3 C 0.706 3.294 4 O -0.595 6.595 5 N -0.734 5.734 6 C 0.122 3.878 7 C 0.505 3.495 8 O -0.537 6.537 9 N -0.601 5.601 10 C 0.102 3.898 11 C -0.130 4.130 12 C -0.130 4.130 13 C 0.173 3.827 14 H 0.060 0.940 15 N -0.742 5.742 16 C -0.249 4.249 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.092 3.908 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.400 0.600 29 H 0.409 0.591 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.363 0.637 39 H 0.260 0.740 40 H 0.062 0.938 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.597 3.863 5.553 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.406 5.406 3 C 0.406 3.594 4 O -0.473 6.473 5 N -0.392 5.392 6 C -0.007 4.007 7 C 0.292 3.708 8 O -0.415 6.415 9 N -0.335 5.335 10 C -0.021 4.021 11 C -0.169 4.169 12 C -0.169 4.169 13 C 0.062 3.938 14 H 0.078 0.922 15 N -0.384 5.384 16 C -0.379 4.379 17 H 0.109 0.891 18 C -0.189 4.189 19 N -0.578 5.578 20 Si 0.715 3.285 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.032 4.032 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.233 0.767 29 H 0.246 0.754 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.850 4.008 5.415 22.865 hybrid contribution 1.374 0.142 0.611 1.511 sum -20.475 4.150 6.026 21.743 Atomic orbital electron populations 1.21392 0.78026 1.01988 1.02264 1.44882 1.07786 1.07223 1.80738 1.15830 0.81393 0.84385 0.77831 1.90923 1.67989 1.30263 1.58150 1.44778 1.04620 1.09884 1.79959 1.20940 0.88732 0.86581 1.04410 1.20433 0.88114 0.85422 0.76843 1.90710 1.79543 1.20964 1.50267 1.48180 1.07620 1.05610 1.72046 1.21829 0.99096 0.81646 0.99494 1.21876 0.96292 1.00184 0.98528 1.21872 0.94645 0.98080 1.02260 1.20450 0.84808 0.92318 0.96199 0.92235 1.42726 1.00756 1.25533 1.69413 1.19089 0.90769 0.98218 1.29815 0.89073 1.24689 0.96339 0.97385 1.00469 1.69705 1.09510 1.28916 1.49622 0.86555 0.80343 0.82044 0.79590 1.21028 1.21683 1.20279 1.22746 0.76094 1.03959 1.00379 0.92351 0.90640 0.92384 0.76680 0.75374 0.88692 0.88569 0.91000 0.89871 0.91260 0.90679 0.91248 0.92076 0.80428 0.92964 0.91967 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.73 10.70 59.85 0.64 1.37 16 2 N -0.75 -6.37 5.72 -72.07 -0.41 -6.78 16 3 C 0.71 8.51 8.57 -86.92 -0.74 7.77 16 4 O -0.59 -9.16 16.34 5.29 0.09 -9.08 16 5 N -0.73 -8.38 5.53 -66.41 -0.37 -8.75 16 6 C 0.12 1.38 4.50 -5.19 -0.02 1.36 16 7 C 0.51 7.24 7.77 -10.98 -0.09 7.16 16 8 O -0.54 -9.66 15.08 5.56 0.08 -9.58 16 9 N -0.60 -8.31 2.97 -172.79 -0.51 -8.82 16 10 C 0.10 1.03 6.34 -3.71 -0.02 1.00 16 11 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 12 C -0.13 -1.82 5.35 -26.69 -0.14 -1.96 16 13 C 0.17 3.17 2.92 -67.83 -0.20 2.98 16 14 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 15 N -0.74 -16.95 4.93 -53.33 -0.26 -17.21 16 16 C -0.25 -6.94 10.41 -15.06 -0.16 -7.09 16 17 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 18 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 19 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 20 Si 0.88 21.70 27.74 -169.99 -4.71 16.99 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 24 C 0.09 1.61 6.01 -3.73 -0.02 1.59 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.40 2.37 8.84 -40.82 -0.36 2.01 16 29 H 0.41 4.50 7.45 -40.82 -0.30 4.20 16 30 H 0.10 0.97 7.94 -51.92 -0.41 0.56 16 31 H 0.10 1.02 7.70 -51.93 -0.40 0.62 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.65 5.95 -51.93 -0.31 0.34 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.36 8.06 5.66 -40.82 -0.23 7.83 16 39 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 2.03 7.00 -51.93 -0.36 1.66 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -35.64 335.43 -7.48 -43.12 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.20 Total: 10.66 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: -1.01 Total: 12.76 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.78 Total: -69.92 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.17 Total: -18.66 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.64 -7.48 -43.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208278881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.307 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds