Wall clock time and date at job start Tue Mar 31 2020 02:59:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09000 * 110.64164 * 2 1
4 4 C 1.54333 * 110.85052 * 236.83749 * 2 1 3
5 5 N 1.47025 * 107.26329 * 219.67640 * 4 2 1
6 6 C 1.36938 * 125.64597 * 178.85182 * 5 4 2
7 7 H 1.07997 * 120.00167 * 343.73650 * 6 5 4
8 8 C 1.38816 * 120.00061 * 163.73523 * 6 5 4
9 9 N 1.31621 * 119.99703 * 157.04411 * 8 6 5
10 10 Si 1.86797 * 119.99887 * 336.77521 * 8 6 5
11 11 H 1.48494 * 109.47406 * 89.99479 * 10 8 6
12 12 H 1.48499 * 109.46786 * 209.99828 * 10 8 6
13 13 H 1.48503 * 109.47161 * 329.99691 * 10 8 6
14 14 C 1.47424 * 108.70440 * 358.58214 * 5 4 2
15 15 C 1.54906 * 104.82930 * 24.35892 * 14 5 4
16 16 H 1.08998 * 111.00442 * 81.06630 * 15 14 5
17 17 N 1.46504 * 111.00469 * 204.87514 * 15 14 5
18 18 C 1.34772 * 120.00165 * 273.55248 * 17 15 14
19 19 O 1.21289 * 119.99979 * 359.97438 * 18 17 15
20 20 C 1.50702 * 120.00249 * 179.97438 * 18 17 15
21 21 C 1.52993 * 109.47355 * 179.97438 * 20 18 17
22 22 N 1.46496 * 109.47365 * 180.02562 * 21 20 18
23 23 C 1.34774 * 120.00595 * 180.02562 * 22 21 20
24 24 N 1.34777 * 120.00876 * 180.02562 * 23 22 21
25 25 O 1.21594 * 119.99703 * 359.97438 * 23 22 21
26 26 H 1.08997 * 109.47154 * 296.85417 * 1 2 3
27 27 H 1.09000 * 109.46556 * 56.85767 * 1 2 3
28 28 H 1.08999 * 109.47033 * 176.85498 * 1 2 3
29 29 H 1.08995 * 109.99315 * 100.19596 * 4 2 1
30 30 H 1.09005 * 109.78024 * 339.02830 * 4 2 1
31 31 H 0.96996 * 120.00437 * 4.36482 * 9 8 6
32 32 H 1.09002 * 110.36452 * 143.19894 * 14 5 4
33 33 H 1.08996 * 110.37017 * 265.52085 * 14 5 4
34 34 H 0.97000 * 119.99802 * 93.54831 * 17 15 14
35 35 H 1.09002 * 109.47038 * 299.99925 * 20 18 17
36 36 H 1.09004 * 109.46808 * 59.99653 * 20 18 17
37 37 H 1.09002 * 109.47409 * 300.00216 * 21 20 18
38 38 H 1.09004 * 109.47023 * 60.00302 * 21 20 18
39 39 H 0.97000 * 119.99707 * 0.02562 * 22 21 20
40 40 H 0.97008 * 119.99361 * 359.97438 * 24 23 22
41 41 H 0.96993 * 120.00607 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9143 1.0200 0.0000
4 6 2.0794 -0.7889 -1.2074
5 7 3.2445 -1.5520 -0.7364
6 6 4.0043 -2.3994 -1.4978
7 1 3.6287 -2.7580 -2.4447
8 6 5.2574 -2.7976 -1.0525
9 7 5.7931 -3.9116 -1.5046
10 14 6.1865 -1.7485 0.1827
11 1 5.8348 -2.1774 1.5602
12 1 7.6472 -1.9119 -0.0289
13 1 5.8160 -0.3223 -0.0014
14 6 3.4633 -1.2487 0.6897
15 6 2.0790 -0.7935 1.2151
16 1 1.4452 -1.6512 1.4402
17 7 2.2214 0.0728 2.3880
18 6 2.3155 -0.4690 3.6184
19 8 2.2818 -1.6737 3.7548
20 6 2.4625 0.4221 4.8249
21 6 2.5467 -0.4383 6.0871
22 7 2.6890 0.4279 7.2600
23 6 2.7831 -0.1138 8.4905
24 7 2.9135 0.6831 9.5696
25 8 2.7493 -1.3215 8.6272
26 1 -0.3633 0.4642 0.9168
27 1 -0.3632 0.5619 -0.8605
28 1 -0.3633 -1.0261 -0.0564
29 1 2.3815 -0.1002 -1.9963
30 1 1.3156 -1.4713 -1.5805
31 1 5.3416 -4.4215 -2.1953
32 1 3.7960 -2.1406 1.2205
33 1 4.1931 -0.4466 0.7993
34 1 2.2480 1.0363 2.2789
35 1 3.3710 1.0167 4.7288
36 1 1.6000 1.0850 4.8942
37 1 1.6381 -1.0327 6.1830
38 1 3.4091 -1.1014 6.0180
39 1 2.7156 1.3914 7.1509
40 1 2.9401 1.6467 9.4605
41 1 2.9808 0.2932 10.4552
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001210883089.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:59:18
Heat of formation + Delta-G solvation = -49.984791 kcal
Electronic energy + Delta-G solvation = -22611.166701 eV
Core-core repulsion = 19140.480167 eV
Total energy + Delta-G solvation = -3470.686535 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 284.164 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.19025 -39.69333 -37.92719 -35.30914 -34.14422 -33.90647 -32.79406 -30.99463
-30.81397 -27.93068 -26.02016 -24.47619 -22.84353 -21.41609 -20.91624 -20.47746
-19.66574 -18.53108 -17.58283 -17.42060 -16.85497 -16.28575 -16.15745 -15.19263
-14.90310 -14.75645 -14.34515 -14.17148 -13.84815 -13.64770 -13.38639 -12.97818
-12.93779 -12.44627 -12.12308 -11.97572 -11.78714 -11.69647 -11.11824 -11.06066
-10.72193 -10.56621 -10.47023 -10.11470 -9.99019 -9.77707 -9.63708 -9.27030
-9.21033 -8.82316 -8.45957 -7.05094 -6.29045 -3.20908 2.52632 2.69293
2.99227 3.30337 3.47657 3.52633 3.68411 4.19145 4.49792 4.62841
4.73719 4.81744 4.87518 5.04557 5.15610 5.19231 5.26532 5.55474
5.69062 5.70691 5.74494 5.81164 5.86766 5.95994 6.11896 6.17168
6.23417 6.40105 6.42804 6.53192 6.61390 6.63229 6.76507 6.80186
7.57828 7.67111 7.75568 8.30259 8.37234 8.38136 9.05583 9.60739
10.27187 11.18432
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.018270 B = 0.004000 C = 0.003463
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1532.185038 B = 6998.331951 C = 8082.471667
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.110 4.110
3 H 0.077 0.923
4 C 0.140 3.860
5 N -0.606 5.606
6 C -0.329 4.329
7 H 0.075 0.925
8 C -0.017 4.017
9 N -0.920 5.920
10 Si 1.063 2.937
11 H -0.292 1.292
12 H -0.298 1.298
13 H -0.288 1.288
14 C 0.101 3.899
15 C 0.135 3.865
16 H 0.099 0.901
17 N -0.718 5.718
18 C 0.513 3.487
19 O -0.528 6.528
20 C -0.152 4.152
21 C 0.150 3.850
22 N -0.746 5.746
23 C 0.703 3.297
24 N -0.870 5.870
25 O -0.589 6.589
26 H 0.052 0.948
27 H 0.056 0.944
28 H 0.058 0.942
29 H 0.030 0.970
30 H 0.033 0.967
31 H 0.263 0.737
32 H 0.064 0.936
33 H 0.031 0.969
34 H 0.398 0.602
35 H 0.100 0.900
36 H 0.099 0.901
37 H 0.077 0.923
38 H 0.079 0.921
39 H 0.395 0.605
40 H 0.395 0.605
41 H 0.414 0.586
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.757 18.591 16.055 26.431
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.129 4.129
3 H 0.096 0.904
4 C 0.014 3.986
5 N -0.334 5.334
6 C -0.456 4.456
7 H 0.093 0.907
8 C -0.218 4.218
9 N -0.560 5.560
10 Si 0.895 3.105
11 H -0.219 1.219
12 H -0.226 1.226
13 H -0.215 1.215
14 C -0.026 4.026
15 C 0.030 3.970
16 H 0.117 0.883
17 N -0.369 5.369
18 C 0.298 3.702
19 O -0.403 6.403
20 C -0.193 4.193
21 C 0.026 3.974
22 N -0.403 5.403
23 C 0.401 3.599
24 N -0.438 5.438
25 O -0.466 6.466
26 H 0.071 0.929
27 H 0.075 0.925
28 H 0.077 0.923
29 H 0.048 0.952
30 H 0.051 0.949
31 H 0.074 0.926
32 H 0.082 0.918
33 H 0.049 0.951
34 H 0.232 0.768
35 H 0.118 0.882
36 H 0.117 0.883
37 H 0.096 0.904
38 H 0.097 0.903
39 H 0.228 0.772
40 H 0.223 0.777
41 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges -8.403 16.615 16.892 25.140
hybrid contribution -1.248 1.380 -0.818 2.032
sum -9.651 17.995 16.074 25.987
Atomic orbital electron populations
1.21741 0.94456 1.02180 1.01150 1.22440 0.95700 0.99231 0.95576
0.90431 1.21405 0.90473 0.93086 0.93677 1.44668 1.32863 1.51244
1.04597 1.20015 0.98196 1.22407 1.05013 0.90691 1.25910 0.94388
0.98259 1.03198 1.70900 1.44639 1.11507 1.28970 0.83846 0.75633
0.75421 0.75608 1.21906 1.22610 1.21546 1.22315 0.94305 0.99294
0.86679 1.22322 0.98547 0.93119 0.83048 0.88331 1.45930 1.74714
1.10158 1.06140 1.20261 0.76666 0.89067 0.84201 1.90798 1.48629
1.14952 1.85943 1.21795 1.04870 0.99359 0.93264 1.20925 1.04174
0.91582 0.80755 1.45069 1.79827 1.09960 1.05443 1.15951 0.77686
0.85438 0.80803 1.42989 1.82189 1.09827 1.08795 1.91021 1.57642
1.12632 1.85285 0.92932 0.92542 0.92295 0.95202 0.94924 0.92649
0.91769 0.95135 0.76849 0.88158 0.88309 0.90436 0.90272 0.77168
0.77708 0.75373
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.64 9.16 37.16 0.34 -1.30 16
2 C -0.11 -1.63 3.16 -88.78 -0.28 -1.92 16
3 H 0.08 1.01 7.99 -51.93 -0.42 0.59 16
4 C 0.14 2.75 6.85 -3.06 -0.02 2.73 16
5 N -0.61 -15.11 3.23 -170.07 -0.55 -15.66 16
6 C -0.33 -9.64 10.44 -15.06 -0.16 -9.79 16
7 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16
8 C -0.02 -0.50 5.43 -17.43 -0.09 -0.60 16
9 N -0.92 -29.57 13.70 55.49 0.76 -28.81 16
10 Si 1.06 27.68 24.70 -169.99 -4.20 23.49 16
11 H -0.29 -7.48 6.70 56.52 0.38 -7.10 16
12 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16
13 H -0.29 -6.98 6.25 56.52 0.35 -6.63 16
14 C 0.10 2.26 4.40 -2.53 -0.01 2.25 16
15 C 0.13 2.31 2.77 -65.78 -0.18 2.13 16
16 H 0.10 1.87 7.63 -51.93 -0.40 1.48 16
17 N -0.72 -9.29 5.23 -51.73 -0.27 -9.56 16
18 C 0.51 7.07 7.83 -10.99 -0.09 6.99 16
19 O -0.53 -10.07 15.73 5.55 0.09 -9.98 16
20 C -0.15 -1.27 5.81 -27.89 -0.16 -1.44 16
21 C 0.15 1.66 4.96 -4.05 -0.02 1.64 16
22 N -0.75 -6.14 5.56 -65.23 -0.36 -6.50 16
23 C 0.70 7.59 8.84 -86.92 -0.77 6.82 16
24 N -0.87 -5.00 8.88 27.64 0.25 -4.75 16
25 O -0.59 -9.74 17.18 5.28 0.09 -9.65 16
26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
28 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16
29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16
30 H 0.03 0.65 7.77 -51.93 -0.40 0.24 16
31 H 0.26 8.34 8.73 -40.82 -0.36 7.98 16
32 H 0.06 1.66 6.52 -51.93 -0.34 1.32 16
33 H 0.03 0.69 5.46 -51.93 -0.28 0.41 16
34 H 0.40 3.60 8.52 -40.82 -0.35 3.25 16
35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16
37 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16
38 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16
39 H 0.39 1.65 8.49 -40.82 -0.35 1.31 16
40 H 0.40 0.86 8.84 -40.82 -0.36 0.49 16
41 H 0.41 2.10 8.93 -40.82 -0.36 1.73 16
LS Contribution 335.83 15.07 5.06 5.06
Total: -1.00 -40.08 335.83 -6.86 -46.93
By element:
Atomic # 1 Polarization: 8.20 SS G_CDS: -6.28 Total: 1.92 kcal
Atomic # 6 Polarization: 8.96 SS G_CDS: -1.44 Total: 7.51 kcal
Atomic # 7 Polarization: -65.11 SS G_CDS: -0.18 Total: -65.29 kcal
Atomic # 8 Polarization: -19.81 SS G_CDS: 0.18 Total: -19.63 kcal
Atomic # 14 Polarization: 27.68 SS G_CDS: -4.20 Total: 23.49 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -40.08 -6.86 -46.93 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001210883089.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.051 kcal
(2) G-P(sol) polarization free energy of solvation -40.078 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.129 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.934 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.985 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds