Wall clock time and date at job start Tue Mar 31 2020 02:59:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09000 * 110.64164 * 2 1
4 4 C 1.54333 * 110.85052 * 236.83749 * 2 1 3
5 5 N 1.47025 * 107.26329 * 219.67640 * 4 2 1
6 6 C 1.36938 * 125.64597 * 178.85182 * 5 4 2
7 7 H 1.07997 * 120.00167 * 343.73650 * 6 5 4
8 8 C 1.38816 * 120.00061 * 163.73523 * 6 5 4
9 9 N 1.31621 * 119.99703 * 157.04411 * 8 6 5
10 10 Si 1.86797 * 119.99887 * 336.77521 * 8 6 5
11 11 H 1.48494 * 109.47406 * 89.99479 * 10 8 6
12 12 H 1.48499 * 109.46786 * 209.99828 * 10 8 6
13 13 H 1.48503 * 109.47161 * 329.99691 * 10 8 6
14 14 C 1.47424 * 108.70440 * 358.58214 * 5 4 2
15 15 C 1.54906 * 104.82930 * 24.35892 * 14 5 4
16 16 H 1.08998 * 111.00442 * 81.06630 * 15 14 5
17 17 N 1.46504 * 111.00469 * 204.87514 * 15 14 5
18 18 C 1.34772 * 120.00165 * 273.55248 * 17 15 14
19 19 O 1.21289 * 119.99979 * 359.97438 * 18 17 15
20 20 C 1.50702 * 120.00249 * 179.97438 * 18 17 15
21 21 C 1.52993 * 109.47355 * 179.97438 * 20 18 17
22 22 N 1.46496 * 109.47365 * 180.02562 * 21 20 18
23 23 C 1.34774 * 120.00595 * 180.02562 * 22 21 20
24 24 N 1.34777 * 120.00876 * 180.02562 * 23 22 21
25 25 O 1.21594 * 119.99703 * 359.97438 * 23 22 21
26 26 H 1.08997 * 109.47154 * 296.85417 * 1 2 3
27 27 H 1.09000 * 109.46556 * 56.85767 * 1 2 3
28 28 H 1.08999 * 109.47033 * 176.85498 * 1 2 3
29 29 H 1.08995 * 109.99315 * 100.19596 * 4 2 1
30 30 H 1.09005 * 109.78024 * 339.02830 * 4 2 1
31 31 H 0.96996 * 120.00437 * 4.36482 * 9 8 6
32 32 H 1.09002 * 110.36452 * 143.19894 * 14 5 4
33 33 H 1.08996 * 110.37017 * 265.52085 * 14 5 4
34 34 H 0.97000 * 119.99802 * 93.54831 * 17 15 14
35 35 H 1.09002 * 109.47038 * 299.99925 * 20 18 17
36 36 H 1.09004 * 109.46808 * 59.99653 * 20 18 17
37 37 H 1.09002 * 109.47409 * 300.00216 * 21 20 18
38 38 H 1.09004 * 109.47023 * 60.00302 * 21 20 18
39 39 H 0.97000 * 119.99707 * 0.02562 * 22 21 20
40 40 H 0.97008 * 119.99361 * 359.97438 * 24 23 22
41 41 H 0.96993 * 120.00607 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9143 1.0200 0.0000
4 6 2.0794 -0.7889 -1.2074
5 7 3.2445 -1.5520 -0.7364
6 6 4.0043 -2.3994 -1.4978
7 1 3.6287 -2.7580 -2.4447
8 6 5.2574 -2.7976 -1.0525
9 7 5.7931 -3.9116 -1.5046
10 14 6.1865 -1.7485 0.1827
11 1 5.8348 -2.1774 1.5602
12 1 7.6472 -1.9119 -0.0289
13 1 5.8160 -0.3223 -0.0014
14 6 3.4633 -1.2487 0.6897
15 6 2.0790 -0.7935 1.2151
16 1 1.4452 -1.6512 1.4402
17 7 2.2214 0.0728 2.3880
18 6 2.3155 -0.4690 3.6184
19 8 2.2818 -1.6737 3.7548
20 6 2.4625 0.4221 4.8249
21 6 2.5467 -0.4383 6.0871
22 7 2.6890 0.4279 7.2600
23 6 2.7831 -0.1138 8.4905
24 7 2.9135 0.6831 9.5696
25 8 2.7493 -1.3215 8.6272
26 1 -0.3633 0.4642 0.9168
27 1 -0.3632 0.5619 -0.8605
28 1 -0.3633 -1.0261 -0.0564
29 1 2.3815 -0.1002 -1.9963
30 1 1.3156 -1.4713 -1.5805
31 1 5.3416 -4.4215 -2.1953
32 1 3.7960 -2.1406 1.2205
33 1 4.1931 -0.4466 0.7993
34 1 2.2480 1.0363 2.2789
35 1 3.3710 1.0167 4.7288
36 1 1.6000 1.0850 4.8942
37 1 1.6381 -1.0327 6.1830
38 1 3.4091 -1.1014 6.0180
39 1 2.7156 1.3914 7.1509
40 1 2.9401 1.6467 9.4605
41 1 2.9808 0.2932 10.4552
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001210883089.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:59:17
Heat of formation + Delta-G solvation = -87.643874 kcal
Electronic energy + Delta-G solvation = -22612.799722 eV
Core-core repulsion = 19140.480167 eV
Total energy + Delta-G solvation = -3472.319555 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 284.164 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.23267 -40.71933 -39.38697 -36.22891 -35.75892 -34.65119 -34.43324 -32.79223
-31.66187 -29.46370 -27.62552 -25.67204 -24.27434 -22.64238 -22.22381 -21.72582
-20.93743 -19.61135 -19.30291 -18.33809 -17.81499 -17.62605 -17.06887 -16.66688
-16.05036 -15.89736 -15.69647 -15.62289 -15.15408 -14.99801 -14.62627 -14.54325
-14.17652 -13.95497 -13.57609 -13.24066 -13.03365 -12.89478 -12.62772 -12.45087
-12.14884 -11.95063 -11.77817 -11.58253 -11.42430 -11.37491 -10.95296 -10.76342
-10.75211 -10.10342 -9.99190 -9.18391 -8.66939 -5.52146 1.33452 1.44506
1.60037 1.64000 1.73357 2.16169 2.31123 2.48213 3.03246 3.37336
3.49780 3.61098 3.75181 3.82697 3.98934 4.04875 4.13477 4.28678
4.47323 4.55314 4.56556 4.75749 4.82833 4.89185 4.95722 4.97472
5.01249 5.06806 5.21482 5.38818 5.41449 5.53730 5.57481 5.91824
6.04233 6.07890 6.59352 6.77166 7.14496 7.31485 7.44316 7.66814
8.07199 8.80338
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.018270 B = 0.004000 C = 0.003463
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1532.185038 B = 6998.331951 C = 8082.471667
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.088 4.088
3 H 0.114 0.886
4 C 0.129 3.871
5 N -0.629 5.629
6 C -0.317 4.317
7 H 0.045 0.955
8 C -0.077 4.077
9 N -0.957 5.957
10 Si 1.105 2.895
11 H -0.293 1.293
12 H -0.300 1.300
13 H -0.252 1.252
14 C 0.096 3.904
15 C 0.149 3.851
16 H 0.073 0.927
17 N -0.700 5.700
18 C 0.506 3.494
19 O -0.591 6.591
20 C -0.130 4.130
21 C 0.154 3.846
22 N -0.725 5.725
23 C 0.694 3.306
24 N -0.844 5.844
25 O -0.655 6.655
26 H 0.079 0.921
27 H 0.077 0.923
28 H 0.040 0.960
29 H 0.038 0.962
30 H 0.025 0.975
31 H 0.249 0.751
32 H 0.019 0.981
33 H 0.043 0.957
34 H 0.424 0.576
35 H 0.137 0.863
36 H 0.148 0.852
37 H 0.050 0.950
38 H 0.040 0.960
39 H 0.420 0.580
40 H 0.417 0.583
41 H 0.420 0.580
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.049 23.919 17.739 31.763
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.107 4.107
3 H 0.132 0.868
4 C 0.004 3.996
5 N -0.357 5.357
6 C -0.446 4.446
7 H 0.063 0.937
8 C -0.271 4.271
9 N -0.601 5.601
10 Si 0.931 3.069
11 H -0.220 1.220
12 H -0.228 1.228
13 H -0.177 1.177
14 C -0.030 4.030
15 C 0.042 3.958
16 H 0.091 0.909
17 N -0.353 5.353
18 C 0.294 3.706
19 O -0.470 6.470
20 C -0.170 4.170
21 C 0.028 3.972
22 N -0.383 5.383
23 C 0.392 3.608
24 N -0.413 5.413
25 O -0.537 6.537
26 H 0.098 0.902
27 H 0.096 0.904
28 H 0.060 0.940
29 H 0.056 0.944
30 H 0.043 0.957
31 H 0.059 0.941
32 H 0.037 0.963
33 H 0.060 0.940
34 H 0.262 0.738
35 H 0.155 0.845
36 H 0.166 0.834
37 H 0.068 0.932
38 H 0.059 0.941
39 H 0.258 0.742
40 H 0.248 0.752
41 H 0.253 0.747
Dipole moment (debyes) X Y Z Total
from point charges -9.741 22.127 18.585 30.494
hybrid contribution -0.942 -0.307 -1.367 1.688
sum -10.683 21.820 17.218 29.777
Atomic orbital electron populations
1.21716 0.91738 1.01884 1.03563 1.22393 0.97676 0.99487 0.91190
0.86834 1.21680 0.88385 0.93166 0.96325 1.44754 1.33509 1.51650
1.05773 1.19937 0.98403 1.22201 1.04088 0.93686 1.27147 0.95868
0.98682 1.05396 1.71009 1.45500 1.13211 1.30374 0.83342 0.74213
0.75866 0.73470 1.22025 1.22848 1.17700 1.22383 0.97831 0.97745
0.85049 1.21851 0.94669 0.93858 0.85458 0.90877 1.45678 1.74044
1.10998 1.04590 1.21275 0.74829 0.88896 0.85590 1.90796 1.51228
1.18177 1.86825 1.21736 1.08754 0.98065 0.88454 1.20645 1.01208
0.92190 0.83176 1.44700 1.78876 1.10889 1.03872 1.16288 0.77458
0.84915 0.82150 1.42732 1.80249 1.10644 1.07714 1.90984 1.60572
1.15815 1.86319 0.90190 0.90438 0.94044 0.94393 0.95662 0.94138
0.96252 0.93985 0.73760 0.84538 0.83433 0.93179 0.94144 0.74197
0.75162 0.74747
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.57 9.16 71.98 0.66 -1.91 16
2 C -0.09 -2.28 3.16 -9.60 -0.03 -2.31 16
3 H 0.11 2.21 7.99 -2.39 -0.02 2.20 16
4 C 0.13 4.90 6.85 86.73 0.59 5.49 16
5 N -0.63 -31.45 3.23 -691.97 -2.24 -33.68 16
6 C -0.32 -19.22 10.44 84.03 0.88 -18.35 16
7 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16
8 C -0.08 -4.82 5.43 84.86 0.46 -4.36 16
9 N -0.96 -64.41 13.70 21.65 0.30 -64.11 16
10 Si 1.10 56.74 24.70 68.60 1.69 58.44 16
11 H -0.29 -14.98 6.70 99.48 0.67 -14.32 16
12 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16
13 H -0.25 -11.31 6.25 99.48 0.62 -10.69 16
14 C 0.10 4.25 4.40 86.85 0.38 4.63 16
15 C 0.15 4.79 2.77 46.38 0.13 4.92 16
16 H 0.07 2.77 7.63 -2.39 -0.02 2.75 16
17 N -0.70 -15.37 5.23 -435.96 -2.28 -17.65 16
18 C 0.51 12.73 7.83 87.66 0.69 13.42 16
19 O -0.59 -22.88 15.73 -3.06 -0.05 -22.93 16
20 C -0.13 -1.61 5.81 29.85 0.17 -1.43 16
21 C 0.15 3.20 4.96 86.38 0.43 3.63 16
22 N -0.72 -9.98 5.56 -478.54 -2.66 -12.64 16
23 C 0.69 14.05 8.84 179.06 1.58 15.63 16
24 N -0.84 -7.56 8.88 -184.74 -1.64 -9.20 16
25 O -0.65 -22.14 17.18 -4.01 -0.07 -22.21 16
26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
28 H 0.04 0.97 8.07 -2.39 -0.02 0.95 16
29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
30 H 0.03 0.99 7.77 -2.38 -0.02 0.97 16
31 H 0.25 16.77 8.73 -92.71 -0.81 15.96 16
32 H 0.02 1.02 6.52 -2.39 -0.02 1.01 16
33 H 0.04 1.78 5.46 -2.39 -0.01 1.77 16
34 H 0.42 4.98 8.52 -92.71 -0.79 4.19 16
35 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16
36 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16
37 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16
38 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16
39 H 0.42 1.48 8.49 -92.71 -0.79 0.69 16
40 H 0.42 0.20 8.84 -92.70 -0.82 -0.62 16
41 H 0.42 3.40 8.93 -92.71 -0.83 2.57 16
Total: -1.00 -98.16 335.83 -3.30 -101.46
By element:
Atomic # 1 Polarization: 5.46 SS G_CDS: -2.30 Total: 3.16 kcal
Atomic # 6 Polarization: 13.42 SS G_CDS: 5.94 Total: 19.36 kcal
Atomic # 7 Polarization: -128.76 SS G_CDS: -8.52 Total: -137.28 kcal
Atomic # 8 Polarization: -45.03 SS G_CDS: -0.12 Total: -45.14 kcal
Atomic # 14 Polarization: 56.74 SS G_CDS: 1.69 Total: 58.44 kcal
Total: -98.16 -3.30 -101.46 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001210883089.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.820 kcal
(2) G-P(sol) polarization free energy of solvation -98.159 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.339 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.305 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.463 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds