Wall clock time and date at job start Tue Mar 31 2020 02:53:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31607 * 1
3 3 Si 1.86807 * 120.00094 * 2 1
4 4 H 1.48494 * 109.46785 * 270.00081 * 3 2 1
5 5 H 1.48498 * 109.46793 * 30.00022 * 3 2 1
6 6 H 1.48500 * 109.47066 * 150.00170 * 3 2 1
7 7 C 1.38819 * 120.00128 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99775 * 0.02562 * 7 2 1
9 9 N 1.36935 * 119.99849 * 179.97438 * 7 2 1
10 10 C 1.46501 * 119.99704 * 179.97438 * 9 7 2
11 11 H 1.08994 * 109.52419 * 34.92346 * 10 9 7
12 12 C 1.53046 * 109.49630 * 155.00148 * 10 9 7
13 13 C 1.53039 * 109.52798 * 181.31171 * 12 10 9
14 14 C 1.53200 * 109.31160 * 298.64112 * 13 12 10
15 15 N 1.46931 * 108.77279 * 54.63574 * 14 13 12
16 16 C 1.34773 * 120.63029 * 126.41292 * 15 14 13
17 17 O 1.21283 * 119.99790 * 179.97438 * 16 15 14
18 18 C 1.50700 * 119.99929 * 359.97438 * 16 15 14
19 19 C 1.52996 * 109.46981 * 179.97438 * 18 16 15
20 20 N 1.46506 * 109.47102 * 180.02562 * 19 18 16
21 21 C 1.34773 * 120.00050 * 180.02562 * 20 19 18
22 22 N 1.34775 * 120.00524 * 179.97438 * 21 20 19
23 23 O 1.21597 * 120.00171 * 359.97438 * 21 20 19
24 24 C 1.46928 * 118.73792 * 306.39072 * 15 14 13
25 25 H 0.97001 * 120.00347 * 0.02562 * 1 2 3
26 26 H 0.97005 * 120.00354 * 0.02562 * 9 7 2
27 27 H 1.09002 * 109.46115 * 61.29624 * 12 10 9
28 28 H 1.09004 * 109.45806 * 301.32509 * 12 10 9
29 29 H 1.08997 * 109.49901 * 58.58690 * 13 12 10
30 30 H 1.08992 * 109.50107 * 178.69269 * 13 12 10
31 31 H 1.08998 * 109.58358 * 174.41666 * 14 13 12
32 32 H 1.08995 * 109.58474 * 294.70356 * 14 13 12
33 33 H 1.09000 * 109.47307 * 299.99904 * 18 16 15
34 34 H 1.09001 * 109.47034 * 59.99979 * 18 16 15
35 35 H 1.09006 * 109.47771 * 300.00096 * 19 18 16
36 36 H 1.08999 * 109.47392 * 60.00295 * 19 18 16
37 37 H 0.96995 * 119.99848 * 359.97438 * 20 19 18
38 38 H 0.97006 * 119.99420 * 0.02562 * 22 21 20
39 39 H 0.96993 * 120.00661 * 179.97438 * 22 21 20
40 40 H 1.08999 * 109.58766 * 173.40097 * 24 15 14
41 41 H 1.09002 * 109.58364 * 293.68193 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4976 2.0464 -1.4000
5 1 1.4476 2.6527 0.7000
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2022 0.0005
8 1 1.4702 -2.1375 0.0005
9 7 3.3795 -1.2021 0.0000
10 6 4.1120 -2.4709 0.0011
11 1 3.5645 -3.2081 -0.5859
12 6 5.4996 -2.2601 -0.6093
13 6 6.2533 -3.5917 -0.6385
14 6 6.4280 -4.1065 0.7939
15 7 5.1083 -4.1739 1.4364
16 6 4.6821 -5.3158 2.0115
17 8 3.5909 -5.3585 2.5390
18 6 5.5615 -6.5396 1.9990
19 6 4.8466 -7.6885 2.7130
20 7 5.7018 -8.8780 2.7015
21 6 5.2756 -10.0199 3.2767
22 7 6.0620 -11.1144 3.2656
23 8 4.1816 -10.0628 3.8056
24 6 4.2624 -2.9726 1.4404
25 1 -0.4851 0.8400 -0.0004
26 1 3.8646 -0.3620 -0.0004
27 1 6.0557 -1.5412 -0.0076
28 1 5.3953 -1.8796 -1.6254
29 1 5.6855 -4.3185 -1.2194
30 1 7.2324 -3.4457 -1.0944
31 1 6.8753 -5.1002 0.7730
32 1 7.0733 -3.4268 1.3502
33 1 5.7709 -6.8260 0.9684
34 1 6.4975 -6.3196 2.5124
35 1 4.6375 -7.4019 3.7437
36 1 3.9104 -7.9087 2.2001
37 1 6.5743 -8.8440 2.2792
38 1 6.9349 -11.0801 2.8439
39 1 5.7555 -11.9361 3.6799
40 1 3.2810 -3.2181 1.8462
41 1 4.7279 -2.1999 2.0523
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001210996076.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:53:11
Heat of formation + Delta-G solvation = -56.630235 kcal
Electronic energy + Delta-G solvation = -22457.065768 eV
Core-core repulsion = 18986.091065 eV
Total energy + Delta-G solvation = -3470.974703 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 284.164 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.28183 -39.78387 -37.53954 -35.29636 -34.65434 -33.90851 -32.39718 -31.42233
-30.77616 -28.70942 -25.62732 -24.10853 -23.30302 -21.78062 -21.41743 -20.36297
-19.05038 -18.30225 -17.63973 -17.56945 -16.92642 -16.19125 -15.62876 -15.24676
-14.80995 -14.71394 -14.40842 -14.32604 -14.17834 -13.65288 -13.48057 -13.09845
-12.67705 -12.61638 -12.45730 -12.13503 -11.70516 -11.58601 -11.22974 -10.95287
-10.77093 -10.68758 -10.56154 -10.32698 -9.99064 -9.92151 -9.68494 -9.57889
-9.26512 -9.11476 -8.43297 -7.30988 -5.77453 -3.15263 2.53444 2.73275
2.99336 3.19635 3.35694 3.37704 3.44433 4.16505 4.50898 4.56950
4.58685 4.74423 4.82347 4.95957 5.10698 5.13117 5.33247 5.43119
5.45836 5.65937 5.71160 5.77092 5.82442 5.86009 5.98315 6.02914
6.17209 6.19577 6.35327 6.41053 6.61225 6.61298 6.70788 6.87684
7.56274 7.67347 7.98110 8.30882 8.38046 8.41266 9.18002 9.89481
10.07642 11.40526
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.027988 B = 0.003224 C = 0.002967
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1000.187462 B = 8682.560323 C = 9435.648175
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.007 3.993
3 Si 0.885 3.115
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.277 1.277
7 C -0.249 4.249
8 H 0.092 0.908
9 N -0.742 5.742
10 C 0.173 3.827
11 H 0.060 0.940
12 C -0.130 4.130
13 C -0.130 4.130
14 C 0.107 3.893
15 N -0.608 5.608
16 C 0.513 3.487
17 O -0.532 6.532
18 C -0.151 4.151
19 C 0.150 3.850
20 N -0.746 5.746
21 C 0.703 3.297
22 N -0.870 5.870
23 O -0.589 6.589
24 C 0.092 3.908
25 H 0.260 0.740
26 H 0.362 0.638
27 H 0.060 0.940
28 H 0.068 0.932
29 H 0.068 0.932
30 H 0.072 0.928
31 H 0.079 0.921
32 H 0.068 0.932
33 H 0.098 0.902
34 H 0.097 0.903
35 H 0.077 0.923
36 H 0.078 0.922
37 H 0.395 0.605
38 H 0.395 0.605
39 H 0.414 0.586
40 H 0.096 0.904
41 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.738 -16.694 1.192 28.233
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.577 5.577
2 C -0.189 4.189
3 Si 0.715 3.285
4 H -0.211 1.211
5 H -0.217 1.217
6 H -0.203 1.203
7 C -0.379 4.379
8 H 0.110 0.890
9 N -0.385 5.385
10 C 0.062 3.938
11 H 0.078 0.922
12 C -0.169 4.169
13 C -0.169 4.169
14 C -0.017 4.017
15 N -0.342 5.342
16 C 0.300 3.700
17 O -0.408 6.408
18 C -0.191 4.191
19 C 0.026 3.974
20 N -0.403 5.403
21 C 0.401 3.599
22 N -0.438 5.438
23 O -0.466 6.466
24 C -0.032 4.032
25 H 0.070 0.930
26 H 0.195 0.805
27 H 0.078 0.922
28 H 0.087 0.913
29 H 0.086 0.914
30 H 0.091 0.909
31 H 0.098 0.902
32 H 0.086 0.914
33 H 0.117 0.883
34 H 0.115 0.885
35 H 0.095 0.905
36 H 0.096 0.904
37 H 0.228 0.772
38 H 0.223 0.777
39 H 0.246 0.754
40 H 0.114 0.886
41 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 20.875 -16.598 1.882 26.735
hybrid contribution 1.442 1.027 -0.280 1.792
sum 22.317 -15.571 1.602 27.259
Atomic orbital electron populations
1.69701 1.05133 1.25881 1.57004 1.24693 0.95224 0.97214 1.01772
0.86551 0.79188 0.85036 0.77715 1.21075 1.21702 1.20337 1.19101
0.80366 0.94882 1.43513 0.89035 1.42732 1.04152 1.01711 1.89861
1.20455 0.90912 0.89533 0.92857 0.92226 1.21869 0.96758 0.96425
1.01803 1.21876 1.00775 0.98258 0.95977 1.21737 0.84496 1.01623
0.93809 1.48243 1.18068 1.11949 1.55913 1.20231 0.87130 0.83999
0.78680 1.90779 1.21727 1.83782 1.44541 1.21822 1.00063 0.94075
1.03189 1.20936 0.92923 0.81483 1.02049 1.45079 1.21720 1.11134
1.62347 1.15955 0.84087 0.80528 0.79324 1.42990 1.21570 1.13748
1.65502 1.91022 1.21054 1.84021 1.50480 1.22704 0.95752 0.84245
1.00536 0.92972 0.80481 0.92151 0.91303 0.91352 0.90932 0.90238
0.91415 0.88337 0.88501 0.90480 0.90358 0.77216 0.77721 0.75386
0.88599 0.92207
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.49 13.97 55.49 0.78 -28.72 16
2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16
3 Si 0.88 21.92 27.74 -169.99 -4.71 17.20 16
4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
6 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16
7 C -0.25 -7.03 10.41 -15.06 -0.16 -7.18 16
8 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16
9 N -0.74 -17.17 4.93 -53.32 -0.26 -17.43 16
10 C 0.17 3.21 2.92 -67.82 -0.20 3.01 16
11 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16
12 C -0.13 -1.79 5.36 -26.69 -0.14 -1.94 16
13 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16
14 C 0.11 0.98 6.34 -3.70 -0.02 0.96 16
15 N -0.61 -8.34 2.97 -172.78 -0.51 -8.86 16
16 C 0.51 7.36 7.70 -10.99 -0.08 7.27 16
17 O -0.53 -10.38 15.40 5.56 0.09 -10.29 16
18 C -0.15 -1.31 4.16 -27.88 -0.12 -1.43 16
19 C 0.15 1.66 4.96 -4.04 -0.02 1.64 16
20 N -0.75 -6.01 5.56 -65.22 -0.36 -6.38 16
21 C 0.70 7.44 8.84 -86.92 -0.77 6.67 16
22 N -0.87 -4.79 8.88 27.63 0.25 -4.55 16
23 O -0.59 -9.61 17.18 5.28 0.09 -9.52 16
24 C 0.09 1.64 6.01 -3.73 -0.02 1.62 16
25 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16
26 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16
27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
31 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16
32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.10 0.62 7.69 -51.93 -0.40 0.22 16
34 H 0.10 0.58 7.94 -51.93 -0.41 0.17 16
35 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16
36 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16
37 H 0.39 1.59 8.49 -40.82 -0.35 1.24 16
38 H 0.40 0.76 8.84 -40.82 -0.36 0.40 16
39 H 0.41 2.01 8.93 -40.82 -0.36 1.64 16
40 H 0.10 2.10 7.01 -51.93 -0.36 1.73 16
41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
LS Contribution 335.63 15.07 5.06 5.06
Total: -1.00 -38.65 335.63 -7.56 -46.21
By element:
Atomic # 1 Polarization: 14.16 SS G_CDS: -6.18 Total: 7.98 kcal
Atomic # 6 Polarization: 11.08 SS G_CDS: -1.79 Total: 9.29 kcal
Atomic # 7 Polarization: -65.81 SS G_CDS: -0.12 Total: -65.93 kcal
Atomic # 8 Polarization: -19.99 SS G_CDS: 0.18 Total: -19.81 kcal
Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -38.65 -7.56 -46.21 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001210996076.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.418 kcal
(2) G-P(sol) polarization free energy of solvation -38.648 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.066 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.213 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.630 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds