Wall clock time and date at job start Tue Mar 31 2020 02:53:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31607 * 1
3 3 Si 1.86807 * 120.00094 * 2 1
4 4 H 1.48494 * 109.46785 * 270.00081 * 3 2 1
5 5 H 1.48498 * 109.46793 * 30.00022 * 3 2 1
6 6 H 1.48500 * 109.47066 * 150.00170 * 3 2 1
7 7 C 1.38819 * 120.00128 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99775 * 0.02562 * 7 2 1
9 9 N 1.36935 * 119.99849 * 179.97438 * 7 2 1
10 10 C 1.46501 * 119.99704 * 179.97438 * 9 7 2
11 11 H 1.08994 * 109.52419 * 34.92346 * 10 9 7
12 12 C 1.53046 * 109.49630 * 155.00148 * 10 9 7
13 13 C 1.53039 * 109.52798 * 181.31171 * 12 10 9
14 14 C 1.53200 * 109.31160 * 298.64112 * 13 12 10
15 15 N 1.46931 * 108.77279 * 54.63574 * 14 13 12
16 16 C 1.34773 * 120.63029 * 126.41292 * 15 14 13
17 17 O 1.21283 * 119.99790 * 179.97438 * 16 15 14
18 18 C 1.50700 * 119.99929 * 359.97438 * 16 15 14
19 19 C 1.52996 * 109.46981 * 179.97438 * 18 16 15
20 20 N 1.46506 * 109.47102 * 180.02562 * 19 18 16
21 21 C 1.34773 * 120.00050 * 180.02562 * 20 19 18
22 22 N 1.34775 * 120.00524 * 179.97438 * 21 20 19
23 23 O 1.21597 * 120.00171 * 359.97438 * 21 20 19
24 24 C 1.46928 * 118.73792 * 306.39072 * 15 14 13
25 25 H 0.97001 * 120.00347 * 0.02562 * 1 2 3
26 26 H 0.97005 * 120.00354 * 0.02562 * 9 7 2
27 27 H 1.09002 * 109.46115 * 61.29624 * 12 10 9
28 28 H 1.09004 * 109.45806 * 301.32509 * 12 10 9
29 29 H 1.08997 * 109.49901 * 58.58690 * 13 12 10
30 30 H 1.08992 * 109.50107 * 178.69269 * 13 12 10
31 31 H 1.08998 * 109.58358 * 174.41666 * 14 13 12
32 32 H 1.08995 * 109.58474 * 294.70356 * 14 13 12
33 33 H 1.09000 * 109.47307 * 299.99904 * 18 16 15
34 34 H 1.09001 * 109.47034 * 59.99979 * 18 16 15
35 35 H 1.09006 * 109.47771 * 300.00096 * 19 18 16
36 36 H 1.08999 * 109.47392 * 60.00295 * 19 18 16
37 37 H 0.96995 * 119.99848 * 359.97438 * 20 19 18
38 38 H 0.97006 * 119.99420 * 0.02562 * 22 21 20
39 39 H 0.96993 * 120.00661 * 179.97438 * 22 21 20
40 40 H 1.08999 * 109.58766 * 173.40097 * 24 15 14
41 41 H 1.09002 * 109.58364 * 293.68193 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4976 2.0464 -1.4000
5 1 1.4476 2.6527 0.7000
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2022 0.0005
8 1 1.4702 -2.1375 0.0005
9 7 3.3795 -1.2021 0.0000
10 6 4.1120 -2.4709 0.0011
11 1 3.5645 -3.2081 -0.5859
12 6 5.4996 -2.2601 -0.6093
13 6 6.2533 -3.5917 -0.6385
14 6 6.4280 -4.1065 0.7939
15 7 5.1083 -4.1739 1.4364
16 6 4.6821 -5.3158 2.0115
17 8 3.5909 -5.3585 2.5390
18 6 5.5615 -6.5396 1.9990
19 6 4.8466 -7.6885 2.7130
20 7 5.7018 -8.8780 2.7015
21 6 5.2756 -10.0199 3.2767
22 7 6.0620 -11.1144 3.2656
23 8 4.1816 -10.0628 3.8056
24 6 4.2624 -2.9726 1.4404
25 1 -0.4851 0.8400 -0.0004
26 1 3.8646 -0.3620 -0.0004
27 1 6.0557 -1.5412 -0.0076
28 1 5.3953 -1.8796 -1.6254
29 1 5.6855 -4.3185 -1.2194
30 1 7.2324 -3.4457 -1.0944
31 1 6.8753 -5.1002 0.7730
32 1 7.0733 -3.4268 1.3502
33 1 5.7709 -6.8260 0.9684
34 1 6.4975 -6.3196 2.5124
35 1 4.6375 -7.4019 3.7437
36 1 3.9104 -7.9087 2.2001
37 1 6.5743 -8.8440 2.2792
38 1 6.9349 -11.0801 2.8439
39 1 5.7555 -11.9361 3.6799
40 1 3.2810 -3.2181 1.8462
41 1 4.7279 -2.1999 2.0523
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001210996076.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:53:07
Heat of formation + Delta-G solvation = -91.845259 kcal
Electronic energy + Delta-G solvation = -22458.592806 eV
Core-core repulsion = 18986.091065 eV
Total energy + Delta-G solvation = -3472.501741 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 284.164 amu
Computer time = 3.39 seconds
Orbital eigenvalues (eV)
-41.33602 -40.71852 -38.82456 -36.31669 -36.21485 -34.65367 -34.01384 -32.88288
-31.80636 -30.18670 -26.74541 -25.68295 -24.46686 -23.09141 -22.23552 -21.77136
-20.13064 -19.54163 -19.11435 -18.45449 -17.84825 -17.12321 -16.84675 -16.57896
-16.24609 -15.81591 -15.66185 -15.38663 -15.13175 -14.95889 -14.77536 -14.50652
-14.17133 -13.83241 -13.78820 -13.38342 -12.97099 -12.80803 -12.53817 -12.45401
-12.16286 -11.90517 -11.84838 -11.71716 -11.57012 -11.33377 -11.13653 -10.83308
-10.74919 -10.02107 -9.80575 -9.24814 -8.05593 -5.41881 1.35355 1.41589
1.48551 1.63268 1.71861 2.16404 2.22888 2.46291 3.25063 3.48847
3.54619 3.74099 3.82956 4.01377 4.08155 4.12827 4.17730 4.31948
4.38893 4.47933 4.68806 4.77913 4.85229 4.89634 4.94446 4.96777
5.07147 5.18534 5.39194 5.40945 5.49361 5.53392 5.73976 5.92315
6.04574 6.18369 6.49898 7.03720 7.15085 7.21768 7.67214 7.76953
7.98661 9.16417
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.027988 B = 0.003224 C = 0.002967
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1000.187462 B = 8682.560323 C = 9435.648175
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.987 5.987
2 C -0.067 4.067
3 Si 0.966 3.034
4 H -0.273 1.273
5 H -0.298 1.298
6 H -0.245 1.245
7 C -0.238 4.238
8 H 0.042 0.958
9 N -0.745 5.745
10 C 0.169 3.831
11 H 0.029 0.971
12 C -0.123 4.123
13 C -0.124 4.124
14 C 0.099 3.901
15 N -0.605 5.605
16 C 0.501 3.499
17 O -0.601 6.601
18 C -0.128 4.128
19 C 0.156 3.844
20 N -0.724 5.724
21 C 0.694 3.306
22 N -0.843 5.843
23 O -0.655 6.655
24 C 0.104 3.896
25 H 0.259 0.741
26 H 0.370 0.630
27 H 0.075 0.925
28 H 0.066 0.934
29 H 0.062 0.938
30 H 0.116 0.884
31 H 0.128 0.872
32 H 0.089 0.911
33 H 0.139 0.861
34 H 0.144 0.856
35 H 0.045 0.955
36 H 0.041 0.959
37 H 0.420 0.580
38 H 0.417 0.583
39 H 0.420 0.580
40 H 0.038 0.962
41 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 28.790 -16.924 0.170 33.396
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.636 5.636
2 C -0.259 4.259
3 Si 0.792 3.208
4 H -0.198 1.198
5 H -0.224 1.224
6 H -0.170 1.170
7 C -0.369 4.369
8 H 0.060 0.940
9 N -0.388 5.388
10 C 0.060 3.940
11 H 0.047 0.953
12 C -0.161 4.161
13 C -0.162 4.162
14 C -0.022 4.022
15 N -0.338 5.338
16 C 0.290 3.710
17 O -0.482 6.482
18 C -0.168 4.168
19 C 0.031 3.969
20 N -0.382 5.382
21 C 0.392 3.608
22 N -0.413 5.413
23 O -0.537 6.537
24 C -0.022 4.022
25 H 0.068 0.932
26 H 0.204 0.796
27 H 0.094 0.906
28 H 0.085 0.915
29 H 0.081 0.919
30 H 0.134 0.866
31 H 0.146 0.854
32 H 0.107 0.893
33 H 0.157 0.843
34 H 0.162 0.838
35 H 0.064 0.936
36 H 0.059 0.941
37 H 0.258 0.742
38 H 0.249 0.751
39 H 0.253 0.747
40 H 0.056 0.944
41 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 27.121 -16.891 0.806 31.961
hybrid contribution -0.453 0.948 0.030 1.051
sum 26.668 -15.943 0.835 31.081
Atomic orbital electron populations
1.69921 1.07533 1.26917 1.59270 1.25664 0.96219 1.01835 1.02137
0.85262 0.78622 0.78573 0.78364 1.19835 1.22449 1.16968 1.18955
0.82860 0.93068 1.42009 0.93965 1.42672 1.02263 1.03898 1.89983
1.20664 0.93324 0.86894 0.93167 0.95298 1.21819 0.93495 0.99603
1.01200 1.21903 1.02106 0.95408 0.96792 1.22228 0.81874 1.05163
0.92932 1.48317 1.19300 1.10237 1.55933 1.21338 0.86923 0.85468
0.77248 1.90764 1.25076 1.84909 1.47458 1.21764 0.99597 0.89628
1.05769 1.20607 0.92760 0.83435 1.00144 1.44679 1.22253 1.09485
1.61816 1.16286 0.83671 0.81821 0.79022 1.42721 1.21773 1.12360
1.64409 1.90987 1.24209 1.85188 1.53326 1.22129 0.94226 0.86401
0.99494 0.93237 0.79555 0.90614 0.91533 0.91909 0.86602 0.85387
0.89292 0.84307 0.83839 0.93623 0.94067 0.74161 0.75130 0.74738
0.94355 0.91608
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -65.77 13.97 21.65 0.30 -65.47 16
2 C -0.07 -4.10 5.50 84.87 0.47 -3.63 16
3 Si 0.97 45.78 27.74 68.60 1.90 47.68 16
4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16
5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16
6 H -0.25 -10.22 6.52 99.48 0.65 -9.58 16
7 C -0.24 -14.18 10.41 84.04 0.88 -13.30 16
8 H 0.04 2.86 8.06 -2.91 -0.02 2.84 16
9 N -0.74 -34.96 4.93 -322.62 -1.59 -36.55 16
10 C 0.17 6.33 2.92 45.06 0.13 6.46 16
11 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16
12 C -0.12 -3.01 5.36 30.62 0.16 -2.85 16
13 C -0.12 -1.81 6.08 30.67 0.19 -1.62 16
14 C 0.10 1.26 6.34 86.36 0.55 1.80 16
15 N -0.61 -15.62 2.97 -818.95 -2.43 -18.05 16
16 C 0.50 14.13 7.70 87.66 0.67 14.80 16
17 O -0.60 -25.30 15.40 -3.04 -0.05 -25.35 16
18 C -0.13 -1.77 4.16 29.85 0.12 -1.64 16
19 C 0.16 3.39 4.96 86.38 0.43 3.81 16
20 N -0.72 -9.97 5.56 -478.52 -2.66 -12.63 16
21 C 0.69 13.97 8.84 179.06 1.58 15.56 16
22 N -0.84 -7.28 8.88 -184.74 -1.64 -8.92 16
23 O -0.65 -22.17 17.18 -4.02 -0.07 -22.24 16
24 C 0.10 3.80 6.01 86.35 0.52 4.32 16
25 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16
26 H 0.37 16.08 5.66 -92.70 -0.52 15.55 16
27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
30 H 0.12 0.86 8.14 -2.39 -0.02 0.85 16
31 H 0.13 0.47 5.93 -2.39 -0.01 0.46 16
32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16
33 H 0.14 0.92 7.69 -2.39 -0.02 0.90 16
34 H 0.14 0.77 7.94 -2.39 -0.02 0.75 16
35 H 0.05 1.28 8.10 -2.38 -0.02 1.26 16
36 H 0.04 1.20 8.10 -2.39 -0.02 1.18 16
37 H 0.42 1.37 8.49 -92.71 -0.79 0.59 16
38 H 0.42 0.02 8.84 -92.70 -0.82 -0.80 16
39 H 0.42 3.27 8.93 -92.71 -0.83 2.45 16
40 H 0.04 1.83 7.01 -2.39 -0.02 1.81 16
41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16
Total: -1.00 -98.20 335.63 -2.47 -100.67
By element:
Atomic # 1 Polarization: 19.08 SS G_CDS: -1.93 Total: 17.14 kcal
Atomic # 6 Polarization: 18.02 SS G_CDS: 5.70 Total: 23.72 kcal
Atomic # 7 Polarization: -133.60 SS G_CDS: -8.02 Total: -141.62 kcal
Atomic # 8 Polarization: -47.47 SS G_CDS: -0.12 Total: -47.59 kcal
Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.68 kcal
Total: -98.20 -2.47 -100.67 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001210996076.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.823 kcal
(2) G-P(sol) polarization free energy of solvation -98.200 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.377 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.468 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.668 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.39 seconds