Wall clock time and date at job start Tue Mar 31 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00133 * 2 1 4 4 O 1.21593 * 119.99844 * 0.02562 * 3 2 1 5 5 N 1.34769 * 120.00550 * 179.97438 * 3 2 1 6 6 C 1.46503 * 120.00647 * 180.02562 * 5 3 2 7 7 C 1.50694 * 109.47567 * 179.97438 * 6 5 3 8 8 O 1.21275 * 119.99961 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99872 * 179.97438 * 7 6 5 10 10 C 1.47426 * 125.64500 * 179.97438 * 9 7 6 11 11 C 1.54914 * 104.82992 * 204.16642 * 10 9 7 12 12 H 1.09004 * 111.00278 * 81.10732 * 11 10 9 13 13 C 1.53000 * 111.00205 * 204.91932 * 11 10 9 14 14 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 15 15 H 1.09000 * 110.69068 * 277.04987 * 14 11 10 16 16 N 1.46495 * 110.85076 * 153.69955 * 14 11 10 17 17 C 1.36934 * 119.99717 * 160.08604 * 16 14 11 18 18 H 1.08002 * 120.00471 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99836 * 180.02562 * 17 16 14 20 20 N 1.31613 * 120.00160 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99860 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47550 * 89.99710 * 21 19 17 23 23 H 1.48503 * 109.46790 * 209.99816 * 21 19 17 24 24 H 1.48504 * 109.47100 * 329.99312 * 21 19 17 25 25 C 1.47018 * 125.64981 * 0.02817 * 9 7 6 26 26 H 1.09005 * 109.47073 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47457 * 299.99952 * 1 2 3 28 28 H 1.09001 * 109.47168 * 60.00530 * 1 2 3 29 29 H 0.96998 * 120.00149 * 180.02562 * 2 1 3 30 30 H 0.97002 * 119.99922 * 359.97438 * 5 3 2 31 31 H 1.08997 * 109.46815 * 59.99296 * 6 5 3 32 32 H 1.09007 * 109.46543 * 300.00235 * 6 5 3 33 33 H 1.08999 * 110.36956 * 323.01018 * 10 9 7 34 34 H 1.09001 * 110.36709 * 85.22211 * 10 9 7 35 35 H 1.08997 * 109.47294 * 58.54570 * 13 11 10 36 36 H 1.08997 * 109.47279 * 178.55250 * 13 11 10 37 37 H 1.09006 * 109.47100 * 298.55044 * 13 11 10 38 38 H 0.96997 * 120.00433 * 340.08762 * 16 14 11 39 39 H 0.97005 * 120.00291 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.88241 * 298.32048 * 25 9 7 41 41 H 1.09000 * 109.88049 * 59.33177 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4865 1.1673 0.0005 6 6 4.2191 2.4360 0.0011 7 6 5.7007 2.1607 0.0022 8 8 6.1050 1.0173 0.0030 9 7 6.5765 3.1852 0.0024 10 6 8.0454 3.0597 0.0040 11 6 8.5560 4.3878 0.6166 12 1 8.5005 4.3628 1.7050 13 6 9.9804 4.6949 0.1501 14 6 7.5445 5.4128 0.0325 15 1 7.8373 5.7123 -0.9738 16 7 7.4220 6.5812 0.9077 17 6 6.9235 7.7571 0.4140 18 1 6.6210 7.8234 -0.6207 19 6 6.8080 8.8645 1.2431 20 7 7.1770 8.7840 2.5039 21 14 6.1273 10.4684 0.5697 22 1 4.6529 10.4932 0.7456 23 1 6.7324 11.6094 1.3028 24 1 6.4555 10.5780 -0.8744 25 6 6.2251 4.6128 0.0021 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 3.9716 0.3272 0.0013 31 1 3.9553 3.0074 0.8910 32 1 3.9560 3.0078 -0.8889 33 1 8.3533 2.2147 0.6197 34 1 8.4172 2.9419 -1.0138 35 1 10.0010 4.7569 -0.9379 36 1 10.3048 5.6451 0.5744 37 1 10.6504 3.9015 0.4815 38 1 7.6940 6.5219 1.8369 39 1 7.0959 9.5577 3.0834 40 1 5.6647 4.8564 -0.9005 41 1 5.6286 4.8479 0.8836 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214784804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:14 Heat of formation + Delta-G solvation = -73.923502 kcal Electronic energy + Delta-G solvation = -22483.924359 eV Core-core repulsion = 19012.199764 eV Total energy + Delta-G solvation = -3471.724595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.53517 -40.73965 -39.03819 -35.90601 -35.71034 -35.50856 -33.99695 -32.50483 -29.92477 -29.11903 -27.53415 -26.17417 -25.73509 -23.03886 -22.03323 -21.38589 -20.68253 -19.74292 -19.06822 -17.84457 -17.81701 -17.36321 -16.86866 -16.52948 -16.25757 -15.73322 -15.36792 -15.26536 -15.00995 -14.76971 -14.44753 -14.31206 -14.03149 -13.79464 -13.45594 -13.33214 -13.02843 -13.00126 -12.85492 -12.82824 -12.19114 -12.14601 -12.01902 -11.67251 -11.56196 -11.41693 -11.17005 -10.91387 -10.53934 -9.90888 -9.72575 -9.04888 -7.93177 -5.22569 1.37271 1.41682 1.51196 1.52410 1.59683 2.04396 2.06142 2.58139 3.23483 3.30662 3.39038 3.72723 3.81736 3.88996 4.21038 4.24840 4.28996 4.37568 4.47026 4.47871 4.63608 4.67109 4.68809 4.90120 4.91603 4.96170 5.08186 5.15064 5.16553 5.24668 5.35231 5.45221 5.50310 5.57772 5.89518 6.27572 6.36666 6.87641 7.00319 7.35880 7.47776 8.07775 8.30753 9.29675 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.003968 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.237078 B = 7055.479426 C = 8673.369710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.736 5.736 3 C 0.698 3.302 4 O -0.635 6.635 5 N -0.727 5.727 6 C 0.128 3.872 7 C 0.528 3.472 8 O -0.569 6.569 9 N -0.605 5.605 10 C 0.119 3.881 11 C -0.105 4.105 12 H 0.071 0.929 13 C -0.128 4.128 14 C 0.171 3.829 15 H 0.073 0.927 16 N -0.722 5.722 17 C -0.240 4.240 18 H 0.081 0.919 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.966 3.034 22 H -0.291 1.291 23 H -0.299 1.299 24 H -0.267 1.267 25 C 0.078 3.922 26 H 0.116 0.884 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.415 0.585 30 H 0.414 0.586 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.375 0.625 39 H 0.250 0.750 40 H 0.074 0.926 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.290 -19.256 -6.808 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.392 5.392 3 C 0.397 3.603 4 O -0.516 6.516 5 N -0.386 5.386 6 C 0.000 4.000 7 C 0.317 3.683 8 O -0.450 6.450 9 N -0.338 5.338 10 C -0.004 4.004 11 C -0.124 4.124 12 H 0.090 0.910 13 C -0.185 4.185 14 C 0.061 3.939 15 H 0.090 0.910 16 N -0.361 5.361 17 C -0.371 4.371 18 H 0.099 0.901 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.796 3.204 22 H -0.218 1.218 23 H -0.226 1.226 24 H -0.192 1.192 25 C -0.048 4.048 26 H 0.135 0.865 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.251 0.749 30 H 0.253 0.747 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.208 0.792 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.751 -18.815 -6.940 20.610 hybrid contribution 0.002 0.617 0.457 0.768 sum -4.749 -18.199 -6.483 19.894 Atomic orbital electron populations 1.21580 0.76880 1.04289 1.01338 1.44819 1.08449 1.06574 1.79330 1.16100 0.81498 0.84866 0.77790 1.90932 1.68732 1.32164 1.59798 1.44621 1.04430 1.09616 1.79907 1.20756 0.87376 0.86974 1.04914 1.20166 0.88230 0.83941 0.75960 1.90638 1.80224 1.21295 1.52839 1.48419 1.07630 1.06569 1.71150 1.22357 0.78239 0.97821 1.01938 1.22585 0.96359 0.93360 1.00142 0.91045 1.21563 0.93664 1.01616 1.01683 1.21487 0.91353 0.86162 0.94936 0.90951 1.42470 1.75759 1.07492 1.10346 1.19622 1.32943 0.89089 0.95464 0.90072 1.25481 1.03216 1.01391 0.96149 1.69798 1.55345 1.30636 1.05932 0.85248 0.77547 0.79743 0.77866 1.21845 1.22630 1.19184 1.23134 1.01154 0.78714 1.01775 0.86547 0.93502 0.93315 0.74857 0.74712 0.89022 0.88141 0.90221 0.89518 0.91488 0.93512 0.90744 0.79213 0.94107 0.90746 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.41 10.70 127.77 1.37 2.78 16 2 N -0.74 -12.30 5.72 -500.19 -2.86 -15.16 16 3 C 0.70 18.16 8.57 179.06 1.53 19.69 16 4 O -0.63 -22.44 16.34 -4.01 -0.07 -22.50 16 5 N -0.73 -17.30 5.53 -482.30 -2.67 -19.96 16 6 C 0.13 3.40 5.35 85.63 0.46 3.86 16 7 C 0.53 14.97 7.92 87.66 0.69 15.67 16 8 O -0.57 -17.77 15.92 -3.01 -0.05 -17.82 16 9 N -0.61 -17.12 3.33 -811.80 -2.70 -19.82 16 10 C 0.12 3.01 6.38 86.86 0.55 3.56 16 11 C -0.10 -2.97 3.26 -9.31 -0.03 -3.00 16 12 H 0.07 2.23 8.01 -2.39 -0.02 2.22 16 13 C -0.13 -3.14 9.30 71.98 0.67 -2.47 16 14 C 0.17 5.90 3.08 46.27 0.14 6.04 16 15 H 0.07 2.45 8.00 -2.39 -0.02 2.44 16 16 N -0.72 -33.06 5.18 -316.92 -1.64 -34.70 16 17 C -0.24 -12.32 9.98 84.03 0.84 -11.48 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 19 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 20 N -0.97 -57.05 13.06 21.65 0.28 -56.77 16 21 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C 0.08 2.47 6.23 86.73 0.54 3.01 16 26 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.42 4.10 8.84 -92.71 -0.82 3.28 16 30 H 0.41 8.50 7.45 -92.71 -0.69 7.81 16 31 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.08 1.98 8.04 -2.39 -0.02 1.96 16 34 H 0.09 1.93 8.04 -2.39 -0.02 1.91 16 35 H 0.07 1.48 8.11 -2.39 -0.02 1.46 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.38 18.86 7.72 -92.71 -0.72 18.14 16 39 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.06 2.13 8.03 -2.39 -0.02 2.11 16 Total: -1.00 -69.92 345.72 -1.61 -71.53 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -1.17 Total: 34.23 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: 7.23 Total: 34.31 kcal Atomic # 7 Polarization: -136.83 SS G_CDS: -9.59 Total: -146.41 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.11 Total: -40.32 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -69.92 -1.61 -71.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214784804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.395 kcal (2) G-P(sol) polarization free energy of solvation -69.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds