Wall clock time and date at job start Tue Mar 31 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99888 * 2 1 4 4 H 1.09005 * 109.47165 * 30.00205 * 3 2 1 5 5 C 1.50698 * 109.47193 * 269.99780 * 3 2 1 6 6 O 1.21275 * 120.00104 * 355.00339 * 5 3 2 7 7 N 1.34781 * 119.99953 * 175.00187 * 5 3 2 8 8 C 1.46497 * 120.00015 * 180.02562 * 7 5 3 9 9 H 1.09001 * 110.88492 * 31.12000 * 8 7 5 10 10 C 1.54910 * 111.00585 * 267.19533 * 8 7 5 11 11 N 1.47425 * 104.83342 * 204.91690 * 10 8 7 12 12 C 1.36932 * 125.64718 * 204.08243 * 11 10 8 13 13 H 1.08001 * 119.99945 * 0.02943 * 12 11 10 14 14 C 1.38814 * 120.00088 * 180.02562 * 12 11 10 15 15 N 1.31616 * 119.99787 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00130 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.46937 * 89.99646 * 16 14 12 18 18 H 1.48494 * 109.46982 * 209.99907 * 16 14 12 19 19 H 1.48503 * 109.46809 * 329.99805 * 16 14 12 20 20 C 1.47022 * 108.70210 * 24.12505 * 11 10 8 21 21 C 1.54324 * 107.27471 * 358.94370 * 20 11 10 22 22 H 1.08993 * 110.87251 * 219.37606 * 21 20 11 23 23 O 1.42904 * 110.72021 * 96.16424 * 21 20 11 24 24 C 1.53003 * 109.47115 * 149.99640 * 3 2 1 25 25 C 1.53001 * 117.51964 * 231.28543 * 24 3 2 26 26 C 1.52999 * 60.00190 * 107.47982 * 25 24 3 27 27 H 1.09003 * 109.47079 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47805 * 300.00070 * 1 2 3 29 29 H 1.09002 * 109.47003 * 60.00419 * 1 2 3 30 30 H 0.97003 * 119.99968 * 359.97438 * 7 5 3 31 31 H 1.09006 * 110.36418 * 323.75713 * 10 8 7 32 32 H 1.08999 * 110.36412 * 86.07086 * 10 8 7 33 33 H 0.96994 * 120.00132 * 180.02562 * 15 14 12 34 34 H 1.08999 * 109.88161 * 239.52047 * 20 11 10 35 35 H 1.09000 * 110.00764 * 118.43150 * 20 11 10 36 36 H 0.96703 * 113.99655 * 66.48280 * 23 21 20 37 37 H 1.09002 * 115.54973 * 85.58327 * 24 3 2 38 38 H 1.09001 * 117.49733 * 214.97413 * 25 24 3 39 39 H 1.08995 * 117.49577 * 359.97438 * 25 24 3 40 40 H 1.09004 * 117.50150 * 252.51496 * 26 25 24 41 41 H 1.09004 * 117.51638 * 107.47550 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2146 1.7643 -1.4208 6 8 1.9792 1.0106 -2.3413 7 7 2.6589 3.0124 -1.6685 8 6 2.8571 3.4587 -3.0497 9 1 2.1492 2.9720 -3.7207 10 6 4.3163 3.2142 -3.5084 11 7 4.5454 4.2002 -4.5802 12 6 5.4706 4.0880 -5.5834 13 1 6.1096 3.2187 -5.6339 14 6 5.5872 5.0914 -6.5355 15 7 4.8081 6.1504 -6.4742 16 14 6.8489 4.9380 -7.9044 17 1 6.2358 4.2479 -9.0676 18 1 7.3017 6.2916 -8.3142 19 1 8.0122 4.1525 -7.4196 20 6 3.6166 5.3243 -4.3929 21 6 2.7519 5.0032 -3.1557 22 1 1.7179 5.3092 -3.3144 23 8 3.2887 5.6277 -1.9878 24 6 3.3589 1.2633 0.7213 25 6 3.6000 2.2897 1.8300 26 6 3.3631 0.8207 2.1860 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.8468 3.6154 -0.9323 31 1 5.0071 3.3842 -2.6825 32 1 4.4278 2.2010 -3.8947 33 1 4.8893 6.8514 -7.1396 34 1 2.9809 5.4304 -5.2720 35 1 4.1748 6.2455 -4.2260 36 1 3.2469 6.5937 -2.0039 37 1 4.2121 0.9768 0.1065 38 1 4.6118 2.6785 1.9445 39 1 2.7979 2.9955 2.0454 40 1 2.4051 0.5598 2.6357 41 1 4.2191 0.2426 2.5345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219547063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:17 Heat of formation + Delta-G solvation = -95.729165 kcal Electronic energy + Delta-G solvation = -23333.965423 eV Core-core repulsion = 19829.002512 eV Total energy + Delta-G solvation = -3504.962911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.37562 -39.87062 -38.55821 -37.29566 -36.46224 -35.39406 -33.61896 -30.77081 -29.73260 -28.57284 -27.04826 -26.14485 -23.18232 -22.79713 -22.27208 -21.74354 -21.26649 -19.35164 -18.66843 -18.31155 -17.64436 -16.90586 -16.84584 -16.57568 -15.99880 -15.83465 -15.65100 -15.28318 -14.78503 -14.73748 -14.47994 -14.26541 -14.07093 -13.82909 -13.20007 -12.85017 -12.76503 -12.59440 -12.37403 -12.30309 -12.17949 -12.13245 -11.97596 -11.88847 -11.75635 -11.36862 -11.10955 -10.89061 -10.77932 -10.32749 -10.09712 -8.96469 -7.90219 -5.26149 1.44136 1.46412 1.48499 1.55131 1.96185 2.45630 2.51015 3.13732 3.25827 3.28854 3.51788 3.64533 3.79042 3.84482 3.86966 3.94662 4.06970 4.22627 4.24227 4.39388 4.48007 4.54047 4.60222 4.65004 4.79624 4.82824 4.86079 5.01386 5.05798 5.19064 5.31558 5.33979 5.43023 5.47782 5.63695 6.00383 6.13093 6.59120 6.88038 7.05367 7.23044 7.69047 8.32806 9.19648 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025370 B = 0.003945 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.380595 B = 7095.521211 C = 7211.295532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.378 6.378 3 C 0.117 3.883 4 H 0.118 0.882 5 C 0.486 3.514 6 O -0.579 6.579 7 N -0.687 5.687 8 C 0.149 3.851 9 H 0.088 0.912 10 C 0.133 3.867 11 N -0.621 5.621 12 C -0.250 4.250 13 H 0.075 0.925 14 C -0.058 4.058 15 N -0.947 5.947 16 Si 0.980 3.020 17 H -0.286 1.286 18 H -0.288 1.288 19 H -0.273 1.273 20 C 0.159 3.841 21 C 0.095 3.905 22 H 0.092 0.908 23 O -0.562 6.562 24 C -0.181 4.181 25 C -0.151 4.151 26 C -0.150 4.150 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.420 0.580 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.250 0.750 34 H 0.024 0.976 35 H 0.029 0.971 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.646 -3.957 19.898 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.296 6.296 3 C 0.056 3.944 4 H 0.135 0.865 5 C 0.273 3.727 6 O -0.458 6.458 7 N -0.341 5.341 8 C 0.042 3.958 9 H 0.106 0.894 10 C 0.006 3.994 11 N -0.348 5.348 12 C -0.379 4.379 13 H 0.093 0.907 14 C -0.251 4.251 15 N -0.596 5.596 16 Si 0.807 3.193 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.198 1.198 20 C 0.034 3.966 21 C 0.034 3.966 22 H 0.109 0.891 23 O -0.371 6.371 24 C -0.200 4.200 25 C -0.188 4.188 26 C -0.187 4.187 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.258 0.742 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.250 0.750 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.541 -5.166 19.269 21.701 hybrid contribution 0.645 0.951 -1.440 1.843 sum -7.896 -4.214 17.829 19.950 Atomic orbital electron populations 1.23052 0.79381 1.04266 1.00606 1.87985 1.21516 1.25832 1.94239 1.21555 0.96259 0.86880 0.89725 0.86469 1.22076 0.76114 0.81423 0.93129 1.90694 1.52539 1.54722 1.47814 1.45596 1.66078 1.14246 1.08192 1.21930 0.96516 0.93223 0.84122 0.89441 1.21860 0.94736 0.92060 0.90744 1.44544 1.41396 1.20059 1.28803 1.19413 1.11323 1.04067 1.03064 0.90721 1.25589 1.01704 0.96444 1.01367 1.70103 1.42041 1.10131 1.37277 0.85069 0.78567 0.76724 0.78899 1.21275 1.21389 1.19752 1.21725 0.90656 0.90403 0.93814 1.23101 0.96668 0.91161 0.85642 0.89058 1.86207 1.85513 1.26108 1.39241 1.22002 0.95291 1.10047 0.92660 1.23231 1.04678 0.92524 0.98355 1.22948 1.04291 0.97623 0.93842 0.88149 0.91030 0.95186 0.74161 0.95522 0.95886 0.94068 0.95810 0.95329 0.75030 0.89193 0.87432 0.86344 0.87416 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.81 113.37 1.23 1.65 16 2 O -0.38 -9.76 9.80 -129.99 -1.27 -11.03 16 3 C 0.12 2.67 2.71 29.85 0.08 2.75 16 4 H 0.12 1.84 7.55 -2.38 -0.02 1.82 16 5 C 0.49 15.39 7.11 87.66 0.62 16.01 16 6 O -0.58 -24.13 16.15 15.98 0.26 -23.87 16 7 N -0.69 -20.50 5.13 -435.96 -2.24 -22.74 16 8 C 0.15 5.59 3.31 46.39 0.15 5.75 16 9 H 0.09 3.62 7.54 -2.39 -0.02 3.60 16 10 C 0.13 6.08 6.92 86.86 0.60 6.68 16 11 N -0.62 -33.16 3.39 -691.98 -2.35 -35.51 16 12 C -0.25 -14.58 10.28 84.03 0.86 -13.72 16 13 H 0.07 4.28 7.83 -2.91 -0.02 4.25 16 14 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 15 N -0.95 -56.02 10.31 21.65 0.22 -55.79 16 16 Si 0.98 46.39 29.55 68.60 2.03 48.41 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 C 0.16 7.62 5.14 86.73 0.45 8.06 16 21 C 0.09 3.27 4.20 31.78 0.13 3.40 16 22 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 23 O -0.56 -16.05 12.14 -148.98 -1.81 -17.85 16 24 C -0.18 -3.67 5.35 -10.79 -0.06 -3.73 16 25 C -0.15 -2.02 10.18 30.59 0.31 -1.71 16 26 C -0.15 -2.18 10.16 30.60 0.31 -1.87 16 27 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 29 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.42 10.32 7.59 -92.71 -0.70 9.62 16 31 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.02 1.27 7.38 -2.39 -0.02 1.25 16 35 H 0.03 1.49 7.43 -2.39 -0.02 1.47 16 36 H 0.40 8.36 9.12 -74.06 -0.68 7.68 16 37 H 0.09 2.26 8.11 -2.39 -0.02 2.24 16 38 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.12 1.11 8.05 -2.39 -0.02 1.10 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -76.05 341.57 -0.34 -76.39 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.34 Total: 21.55 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 5.16 Total: 20.44 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -4.36 Total: -114.04 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -2.82 Total: -52.75 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -76.05 -0.34 -76.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219547063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.338 kcal (2) G-P(sol) polarization free energy of solvation -76.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds