Wall clock time and date at job start Tue Mar 31 2020 03:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 119.99951 * 2 1 4 4 O 1.21587 * 120.00015 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99938 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99735 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.46664 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00156 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99497 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00187 * 0.02562 * 9 7 6 11 11 C 1.46495 * 119.99818 * 179.97438 * 9 7 6 12 12 C 1.53010 * 109.47007 * 87.58558 * 11 9 7 13 13 H 1.08998 * 112.73723 * 43.18598 * 12 11 9 14 14 C 1.53493 * 113.46655 * 272.43943 * 12 11 9 15 15 C 1.53612 * 83.30456 * 219.16881 * 14 12 11 16 16 N 1.47060 * 113.46658 * 173.92968 * 12 11 9 17 17 C 1.36939 * 136.05748 * 321.93334 * 16 12 11 18 18 H 1.07992 * 120.00440 * 355.26857 * 17 16 12 19 19 C 1.38819 * 119.99982 * 175.27207 * 17 16 12 20 20 N 1.31625 * 119.99752 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00124 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46785 * 59.99725 * 21 19 17 23 23 H 1.48496 * 109.46829 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47127 * 300.00056 * 21 19 17 25 25 H 1.09004 * 109.46854 * 59.99939 * 1 2 3 26 26 H 1.08998 * 109.47211 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47046 * 299.99736 * 1 2 3 28 28 H 0.97003 * 120.00139 * 180.02562 * 2 1 3 29 29 H 0.96997 * 119.99668 * 0.02562 * 5 3 2 30 30 H 1.09000 * 109.47126 * 59.99663 * 6 5 3 31 31 H 1.09001 * 109.46880 * 299.99935 * 6 5 3 32 32 H 1.09001 * 109.47176 * 274.09435 * 10 9 7 33 33 H 1.09001 * 109.47114 * 34.09334 * 10 9 7 34 34 H 1.08999 * 109.47290 * 154.08796 * 10 9 7 35 35 H 1.08990 * 109.47444 * 207.58468 * 11 9 7 36 36 H 1.09000 * 109.47437 * 327.59151 * 11 9 7 37 37 H 1.09000 * 114.21070 * 332.74216 * 14 12 11 38 38 H 1.09010 * 114.20382 * 105.56463 * 14 12 11 39 39 H 1.08994 * 113.41452 * 271.23987 * 15 14 12 40 40 H 1.08999 * 113.55638 * 140.82687 * 15 14 12 41 41 H 0.97000 * 119.99721 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7008 2.1606 -0.0001 8 8 6.1050 1.0172 -0.0001 9 7 6.5766 3.1851 -0.0001 10 6 6.0882 4.5663 0.0005 11 6 8.0169 2.9174 0.0003 12 6 8.5075 2.7641 -1.4408 13 1 8.0870 3.5137 -2.1111 14 6 8.3911 1.3305 -1.9769 15 6 9.7444 1.6554 -2.6269 16 7 9.9681 2.6331 -1.5514 17 6 11.0572 3.1802 -0.9270 18 1 10.9231 3.9589 -0.1909 19 6 12.3338 2.7338 -1.2403 20 7 12.4973 1.7844 -2.1372 21 14 13.8194 3.4796 -0.3882 22 1 13.7118 3.2598 1.0765 23 1 15.0568 2.8342 -0.8956 24 1 13.8704 4.9371 -0.6676 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9500 -0.8401 -0.0004 29 1 3.9716 0.3272 -0.0013 30 1 3.9561 3.0070 0.8905 31 1 3.9554 3.0081 -0.8895 32 1 5.8975 4.8847 -1.0244 33 1 5.1650 4.6250 0.5769 34 1 6.8387 5.2168 0.4494 35 1 8.5404 3.7466 0.4760 36 1 8.2155 1.9982 0.5514 37 1 8.4383 0.5602 -1.2072 38 1 7.5772 1.1838 -2.6872 39 1 9.6532 2.1090 -3.6138 40 1 10.4472 0.8224 -2.6094 41 1 13.3893 1.4722 -2.3558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235004411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:18 Heat of formation + Delta-G solvation = -20.954555 kcal Electronic energy + Delta-G solvation = -22623.496205 eV Core-core repulsion = 19154.068515 eV Total energy + Delta-G solvation = -3469.427689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46493 -40.65852 -39.57440 -36.57789 -35.66475 -35.42085 -34.25694 -30.83145 -29.90417 -28.88067 -27.39288 -26.34295 -25.37437 -23.79848 -21.93191 -21.05476 -20.53098 -19.64439 -18.73098 -17.87400 -17.50556 -17.30072 -16.92969 -16.62683 -16.26235 -15.81943 -15.46011 -15.37958 -15.14758 -14.45223 -14.37465 -13.93540 -13.86811 -13.75667 -13.48061 -13.33318 -13.08610 -12.98420 -12.93523 -12.60949 -12.53472 -12.27013 -11.78429 -11.66676 -11.48535 -11.18210 -10.93743 -10.79431 -10.45008 -9.83267 -9.63328 -8.90041 -7.87358 -5.22846 1.45734 1.49660 1.50969 1.55696 1.56233 2.11236 2.13142 2.49680 3.30328 3.36451 3.36935 3.56324 3.89898 4.23115 4.25847 4.35023 4.37214 4.39397 4.45971 4.51135 4.69519 4.71012 4.78583 4.87832 4.97335 4.99732 5.04116 5.08150 5.23754 5.29436 5.44995 5.50876 5.53640 5.74934 5.94637 5.95847 6.37439 6.90757 7.01313 7.09362 7.53020 7.62126 8.63370 9.29636 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038415 B = 0.003130 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.697920 B = 8944.092136 C = 9329.064417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.740 5.740 3 C 0.701 3.299 4 O -0.632 6.632 5 N -0.732 5.732 6 C 0.130 3.870 7 C 0.505 3.495 8 O -0.564 6.564 9 N -0.604 5.604 10 C 0.067 3.933 11 C 0.132 3.868 12 C 0.136 3.864 13 H 0.053 0.947 14 C -0.126 4.126 15 C 0.139 3.861 16 N -0.628 5.628 17 C -0.223 4.223 18 H 0.091 0.909 19 C -0.072 4.072 20 N -0.956 5.956 21 Si 0.981 3.019 22 H -0.274 1.274 23 H -0.298 1.298 24 H -0.275 1.275 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.049 0.951 28 H 0.413 0.587 29 H 0.412 0.588 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.017 0.983 40 H 0.040 0.960 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.444 -0.189 5.312 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.396 5.396 3 C 0.400 3.600 4 O -0.514 6.514 5 N -0.390 5.390 6 C 0.002 3.998 7 C 0.293 3.707 8 O -0.442 6.442 9 N -0.336 5.336 10 C -0.075 4.075 11 C 0.008 3.992 12 C 0.030 3.970 13 H 0.070 0.930 14 C -0.164 4.164 15 C 0.014 3.986 16 N -0.355 5.355 17 C -0.351 4.351 18 H 0.109 0.891 19 C -0.264 4.264 20 N -0.605 5.605 21 Si 0.809 3.191 22 H -0.200 1.200 23 H -0.224 1.224 24 H -0.201 1.201 25 H 0.067 0.933 26 H 0.129 0.871 27 H 0.068 0.932 28 H 0.249 0.751 29 H 0.250 0.750 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.444 0.238 5.402 23.086 hybrid contribution 1.769 -0.391 -0.054 1.812 sum -20.675 -0.152 5.348 21.356 Atomic orbital electron populations 1.21557 0.76944 1.04107 1.01410 1.44888 1.08497 1.06831 1.79375 1.16031 0.81450 0.84765 0.77714 1.90896 1.68667 1.31821 1.60019 1.44756 1.04483 1.10059 1.79752 1.20916 0.86468 0.86817 1.05565 1.20819 0.89035 0.84868 0.75964 1.90694 1.80216 1.22266 1.51066 1.47818 1.05669 1.07858 1.72279 1.22180 1.01745 0.80040 1.03533 1.21504 0.79118 1.01741 0.96871 1.22525 0.83942 0.95274 0.95305 0.92995 1.23341 0.96480 0.96843 0.99753 1.22133 0.93659 0.92405 0.90445 1.45907 1.00467 1.49941 1.39155 1.19292 0.84257 1.15012 1.16567 0.89131 1.25701 1.00274 0.99872 1.00602 1.70042 1.21283 1.32423 1.36765 0.85117 0.78170 0.77725 0.78117 1.20003 1.22447 1.20091 0.93279 0.87062 0.93185 0.75097 0.75040 0.87252 0.87582 0.91140 0.88477 0.89794 0.90141 0.92018 0.91217 0.91016 0.96575 0.94166 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.19 10.70 127.77 1.37 2.56 16 2 N -0.74 -10.92 5.72 -500.20 -2.86 -13.78 16 3 C 0.70 15.57 8.57 179.05 1.53 17.11 16 4 O -0.63 -18.64 16.34 -3.99 -0.07 -18.71 16 5 N -0.73 -15.00 5.53 -482.28 -2.67 -17.67 16 6 C 0.13 2.60 4.76 85.63 0.41 3.01 16 7 C 0.51 13.02 7.73 87.66 0.68 13.70 16 8 O -0.56 -18.39 14.27 -3.02 -0.04 -18.43 16 9 N -0.60 -15.22 2.88 -846.76 -2.44 -17.65 16 10 C 0.07 1.08 10.21 127.77 1.30 2.39 16 11 C 0.13 4.48 5.39 86.38 0.47 4.95 16 12 C 0.14 5.47 4.30 41.79 0.18 5.65 16 13 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.13 -5.16 7.16 30.97 0.22 -4.94 16 15 C 0.14 7.00 7.51 83.21 0.63 7.62 16 16 N -0.63 -32.46 3.65 -713.37 -2.60 -35.06 16 17 C -0.22 -12.36 10.55 84.03 0.89 -11.48 16 18 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 20 N -0.96 -59.04 11.43 21.65 0.25 -58.79 16 21 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.41 3.83 8.84 -92.71 -0.82 3.01 16 29 H 0.41 8.08 7.45 -92.71 -0.69 7.39 16 30 H 0.11 1.89 7.41 -2.39 -0.02 1.88 16 31 H 0.11 1.96 8.11 -2.39 -0.02 1.94 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.07 6.61 -2.39 -0.02 1.05 16 34 H 0.08 1.29 7.82 -2.39 -0.02 1.28 16 35 H 0.08 2.67 7.83 -2.39 -0.02 2.65 16 36 H 0.06 2.41 7.21 -2.39 -0.02 2.39 16 37 H 0.07 3.05 7.78 -2.39 -0.02 3.03 16 38 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.04 2.28 6.93 -2.39 -0.02 2.27 16 41 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -77.47 342.20 -0.72 -78.19 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.46 Total: 17.28 kcal Atomic # 6 Polarization: 28.77 SS G_CDS: 8.14 Total: 36.91 kcal Atomic # 7 Polarization: -132.63 SS G_CDS: -10.32 Total: -142.95 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -0.11 Total: -37.14 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -77.47 -0.72 -78.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235004411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.237 kcal (2) G-P(sol) polarization free energy of solvation -77.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds