Wall clock time and date at job start Tue Mar 31 2020 02:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99830 * 2 1 4 4 O 1.20820 * 119.99957 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99846 * 179.97438 * 3 2 1 6 6 H 1.09005 * 115.54939 * 34.33344 * 5 3 2 7 7 C 1.52997 * 117.52114 * 248.63135 * 5 3 2 8 8 C 1.52999 * 117.50080 * 179.97438 * 5 3 2 9 9 H 1.09002 * 117.49960 * 0.02562 * 8 5 3 10 10 C 1.50693 * 117.50229 * 215.00468 * 8 5 3 11 11 O 1.21284 * 120.00172 * 0.02562 * 10 8 5 12 12 N 1.34781 * 120.00196 * 179.97438 * 10 8 5 13 13 C 1.46498 * 119.99965 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.46884 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47012 * 180.02562 * 14 13 12 16 16 N 1.46507 * 109.47334 * 180.02562 * 15 14 13 17 17 C 1.46493 * 119.99798 * 270.00196 * 16 15 14 18 18 C 1.36938 * 119.99607 * 89.99671 * 16 15 14 19 19 H 1.08005 * 120.00056 * 20.36871 * 18 16 15 20 20 C 1.38817 * 119.99868 * 200.36491 * 18 16 15 21 21 N 1.31618 * 119.99668 * 14.98803 * 20 18 16 22 22 Si 1.86798 * 119.99966 * 194.99083 * 20 18 16 23 23 H 1.48502 * 109.46803 * 85.00329 * 22 20 18 24 24 H 1.48495 * 109.47074 * 205.00206 * 22 20 18 25 25 H 1.48499 * 109.47214 * 325.00377 * 22 20 18 26 26 H 1.09003 * 109.47258 * 299.99903 * 1 2 3 27 27 H 1.08999 * 109.47222 * 60.00134 * 1 2 3 28 28 H 1.09002 * 109.47327 * 179.97438 * 1 2 3 29 29 H 1.08994 * 117.50453 * 145.03275 * 7 5 3 30 30 H 1.08998 * 117.49773 * 0.02562 * 7 5 3 31 31 H 0.96998 * 119.99930 * 0.02562 * 12 10 8 32 32 H 1.09000 * 109.46928 * 60.00456 * 13 12 10 33 33 H 1.09000 * 109.47596 * 300.00152 * 13 12 10 34 34 H 1.09000 * 109.47033 * 60.00439 * 14 13 12 35 35 H 1.09000 * 109.47062 * 300.00397 * 14 13 12 36 36 H 1.09000 * 109.47264 * 299.99946 * 15 14 13 37 37 H 1.09000 * 109.47130 * 60.00171 * 15 14 13 38 38 H 1.08997 * 109.47115 * 95.09486 * 17 16 15 39 39 H 1.09006 * 109.46619 * 215.08942 * 17 16 15 40 40 H 1.08994 * 109.47330 * 335.09110 * 17 16 15 41 41 H 0.97004 * 119.99737 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 4.0784 0.4884 -0.5537 7 6 4.2458 1.8058 1.2643 8 6 4.2007 2.6671 -0.0001 9 1 3.5296 3.5260 -0.0005 10 6 5.4859 2.8458 -0.7664 11 8 5.9781 1.9051 -1.3527 12 7 6.0878 4.0512 -0.8011 13 6 7.3375 4.2247 -1.5456 14 6 7.8064 5.6761 -1.4238 15 6 9.1112 5.8575 -2.2019 16 7 9.5605 7.2470 -2.0848 17 6 9.1232 8.2433 -3.0658 18 6 10.3891 7.6144 -1.0584 19 1 10.9708 6.8666 -0.5398 20 6 10.4814 8.9481 -0.6843 21 7 9.5776 9.8113 -1.0970 22 14 11.8883 9.5174 0.4045 23 1 13.0745 9.8189 -0.4366 24 1 11.4803 10.7404 1.1414 25 1 12.2287 8.4456 1.3744 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 5.2051 1.3688 1.5415 30 1 3.6045 2.0979 2.0958 31 1 5.6940 4.8036 -0.3324 32 1 7.1715 3.9830 -2.5954 33 1 8.0996 3.5615 -1.1362 34 1 7.9725 5.9173 -0.3739 35 1 7.0445 6.3395 -1.8330 36 1 9.8732 5.1940 -1.7931 37 1 8.9447 5.6163 -3.2518 38 1 8.2480 8.7690 -2.6843 39 1 9.9279 8.9573 -3.2418 40 1 8.8687 7.7449 -4.0011 41 1 9.6419 10.7431 -0.8353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235504889.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:41 Heat of formation + Delta-G solvation = -78.063790 kcal Electronic energy + Delta-G solvation = -21529.992810 eV Core-core repulsion = 18025.795928 eV Total energy + Delta-G solvation = -3504.196883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08034 -39.81352 -37.36093 -36.40054 -35.87788 -34.72908 -32.00204 -30.06098 -28.62171 -26.36234 -25.79746 -24.79804 -23.77566 -21.82136 -21.00602 -20.54020 -19.74734 -18.46246 -17.27376 -16.80684 -16.71025 -16.64060 -15.85490 -15.47588 -14.81972 -14.56106 -14.33470 -13.98531 -13.67183 -13.35891 -13.13177 -12.91786 -12.71662 -12.66803 -12.36252 -11.67450 -11.37395 -11.20294 -11.20064 -11.10958 -10.99829 -10.85153 -10.82423 -10.74722 -10.48235 -10.10841 -9.99007 -9.85260 -9.76033 -8.98687 -8.55038 -6.79942 -5.73429 -3.17032 1.65965 2.13377 2.41572 3.16787 3.38277 3.44556 3.45255 3.45565 4.14405 4.31799 4.41506 4.50054 4.69365 4.72048 4.79734 4.86345 5.12615 5.19043 5.26514 5.43091 5.49859 5.51731 5.54488 5.83008 5.92968 5.96379 6.11186 6.20808 6.42586 6.56651 6.74837 6.81209 6.99616 7.35772 7.37479 7.51908 7.71409 7.80602 8.17316 8.38438 9.22975 9.87169 10.35235 11.31798 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.002395 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.800267 B =11689.296902 C =11810.817321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.494 3.506 4 O -0.505 6.505 5 C -0.140 4.140 6 H 0.151 0.849 7 C -0.114 4.114 8 C -0.155 4.155 9 H 0.140 0.860 10 C 0.540 3.460 11 O -0.543 6.543 12 N -0.717 5.717 13 C 0.119 3.881 14 C -0.151 4.151 15 C 0.156 3.844 16 N -0.603 5.603 17 C 0.162 3.838 18 C -0.254 4.254 19 H 0.070 0.930 20 C -0.001 4.001 21 N -0.908 5.908 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.280 1.280 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.404 0.596 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.028 0.972 39 H 0.043 0.957 40 H -0.002 1.002 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.595 -17.336 3.366 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.337 3.663 4 O -0.392 6.392 5 C -0.159 4.159 6 H 0.168 0.832 7 C -0.152 4.152 8 C -0.177 4.177 9 H 0.157 0.843 10 C 0.325 3.675 11 O -0.421 6.421 12 N -0.367 5.367 13 C -0.004 4.004 14 C -0.192 4.192 15 C 0.028 3.972 16 N -0.325 5.325 17 C 0.018 3.982 18 C -0.383 4.383 19 H 0.087 0.913 20 C -0.199 4.199 21 N -0.553 5.553 22 Si 0.735 3.265 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.206 1.206 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.238 0.762 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.017 0.983 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.442 -17.496 2.941 23.520 hybrid contribution 0.116 0.949 0.829 1.266 sum -15.326 -16.547 3.770 22.867 Atomic orbital electron populations 1.23320 0.75920 1.03907 1.02729 1.86492 1.23605 1.32901 1.83902 1.22539 0.90286 0.81385 0.72048 1.90683 1.66855 1.36399 1.45310 1.21657 0.88246 0.99924 1.06086 0.83172 1.23111 1.02764 0.99206 0.90113 1.22372 0.98020 0.95524 1.01753 0.84267 1.19401 0.84402 0.83133 0.80561 1.90705 1.65795 1.40262 1.45359 1.46066 1.26173 1.11232 1.53200 1.21561 0.84225 0.98806 0.95822 1.22571 1.00979 0.92257 1.03357 1.20714 0.92444 0.87605 0.96438 1.44008 1.55341 1.03913 1.29228 1.20800 0.99290 0.90744 0.87396 1.19227 1.16066 0.92530 1.10494 0.91270 1.24981 0.98333 0.97157 0.99444 1.70086 1.33429 1.03029 1.48783 0.86272 0.82199 0.78016 0.80057 1.21476 1.21801 1.20577 0.91751 0.91713 0.87857 0.86277 0.86862 0.76169 0.91794 0.91620 0.91214 0.92100 0.93584 0.94233 0.95323 0.93872 0.98344 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.29 10.57 -39.25 -0.41 -3.70 16 3 C 0.49 5.23 7.74 36.00 0.28 5.51 16 4 O -0.50 -6.47 16.01 -18.75 -0.30 -6.77 16 5 C -0.14 -1.35 5.81 -91.78 -0.53 -1.89 16 6 H 0.15 1.49 7.67 -51.93 -0.40 1.09 16 7 C -0.11 -0.91 9.94 -26.71 -0.27 -1.17 16 8 C -0.16 -1.58 5.70 -91.75 -0.52 -2.10 16 9 H 0.14 1.34 7.67 -51.93 -0.40 0.94 16 10 C 0.54 7.08 7.61 -10.99 -0.08 7.00 16 11 O -0.54 -8.90 16.26 5.55 0.09 -8.81 16 12 N -0.72 -9.14 5.56 -60.29 -0.33 -9.48 16 13 C 0.12 1.74 5.67 -4.04 -0.02 1.72 16 14 C -0.15 -2.59 5.65 -26.73 -0.15 -2.74 16 15 C 0.16 3.09 5.71 -4.04 -0.02 3.07 16 16 N -0.60 -14.97 2.93 -181.12 -0.53 -15.50 16 17 C 0.16 3.99 9.02 59.84 0.54 4.52 16 18 C -0.25 -6.89 9.68 -15.06 -0.15 -7.03 16 19 H 0.07 1.84 7.86 -52.48 -0.41 1.42 16 20 C 0.00 -0.03 5.06 -17.43 -0.09 -0.12 16 21 N -0.91 -26.27 10.67 55.49 0.59 -25.68 16 22 Si 0.90 21.72 29.58 -169.99 -5.03 16.70 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 27 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.40 4.40 8.47 -40.82 -0.35 4.05 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 37 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 38 H 0.03 0.75 7.40 -51.93 -0.38 0.37 16 39 H 0.04 1.14 7.21 -51.93 -0.37 0.76 16 40 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -33.19 352.62 -7.05 -40.23 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.48 Total: -0.35 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 0.05 Total: 8.05 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.27 Total: -50.66 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.62 Total: -19.28 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.19 -7.05 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235504889.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.829 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds