Wall clock time and date at job start Tue Mar 31 2020 02:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99830 * 2 1 4 4 O 1.20820 * 119.99957 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99846 * 179.97438 * 3 2 1 6 6 H 1.09005 * 115.54939 * 34.33344 * 5 3 2 7 7 C 1.52997 * 117.52114 * 248.63135 * 5 3 2 8 8 C 1.52999 * 117.50080 * 179.97438 * 5 3 2 9 9 H 1.09002 * 117.49960 * 0.02562 * 8 5 3 10 10 C 1.50693 * 117.50229 * 215.00468 * 8 5 3 11 11 O 1.21284 * 120.00172 * 0.02562 * 10 8 5 12 12 N 1.34781 * 120.00196 * 179.97438 * 10 8 5 13 13 C 1.46498 * 119.99965 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.46884 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47012 * 180.02562 * 14 13 12 16 16 N 1.46507 * 109.47334 * 180.02562 * 15 14 13 17 17 C 1.46493 * 119.99798 * 270.00196 * 16 15 14 18 18 C 1.36938 * 119.99607 * 89.99671 * 16 15 14 19 19 H 1.08005 * 120.00056 * 20.36871 * 18 16 15 20 20 C 1.38817 * 119.99868 * 200.36491 * 18 16 15 21 21 N 1.31618 * 119.99668 * 14.98803 * 20 18 16 22 22 Si 1.86798 * 119.99966 * 194.99083 * 20 18 16 23 23 H 1.48502 * 109.46803 * 85.00329 * 22 20 18 24 24 H 1.48495 * 109.47074 * 205.00206 * 22 20 18 25 25 H 1.48499 * 109.47214 * 325.00377 * 22 20 18 26 26 H 1.09003 * 109.47258 * 299.99903 * 1 2 3 27 27 H 1.08999 * 109.47222 * 60.00134 * 1 2 3 28 28 H 1.09002 * 109.47327 * 179.97438 * 1 2 3 29 29 H 1.08994 * 117.50453 * 145.03275 * 7 5 3 30 30 H 1.08998 * 117.49773 * 0.02562 * 7 5 3 31 31 H 0.96998 * 119.99930 * 0.02562 * 12 10 8 32 32 H 1.09000 * 109.46928 * 60.00456 * 13 12 10 33 33 H 1.09000 * 109.47596 * 300.00152 * 13 12 10 34 34 H 1.09000 * 109.47033 * 60.00439 * 14 13 12 35 35 H 1.09000 * 109.47062 * 300.00397 * 14 13 12 36 36 H 1.09000 * 109.47264 * 299.99946 * 15 14 13 37 37 H 1.09000 * 109.47130 * 60.00171 * 15 14 13 38 38 H 1.08997 * 109.47115 * 95.09486 * 17 16 15 39 39 H 1.09006 * 109.46619 * 215.08942 * 17 16 15 40 40 H 1.08994 * 109.47330 * 335.09110 * 17 16 15 41 41 H 0.97004 * 119.99737 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 4.0784 0.4884 -0.5537 7 6 4.2458 1.8058 1.2643 8 6 4.2007 2.6671 -0.0001 9 1 3.5296 3.5260 -0.0005 10 6 5.4859 2.8458 -0.7664 11 8 5.9781 1.9051 -1.3527 12 7 6.0878 4.0512 -0.8011 13 6 7.3375 4.2247 -1.5456 14 6 7.8064 5.6761 -1.4238 15 6 9.1112 5.8575 -2.2019 16 7 9.5605 7.2470 -2.0848 17 6 9.1232 8.2433 -3.0658 18 6 10.3891 7.6144 -1.0584 19 1 10.9708 6.8666 -0.5398 20 6 10.4814 8.9481 -0.6843 21 7 9.5776 9.8113 -1.0970 22 14 11.8883 9.5174 0.4045 23 1 13.0745 9.8189 -0.4366 24 1 11.4803 10.7404 1.1414 25 1 12.2287 8.4456 1.3744 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 5.2051 1.3688 1.5415 30 1 3.6045 2.0979 2.0958 31 1 5.6940 4.8036 -0.3324 32 1 7.1715 3.9830 -2.5954 33 1 8.0996 3.5615 -1.1362 34 1 7.9725 5.9173 -0.3739 35 1 7.0445 6.3395 -1.8330 36 1 9.8732 5.1940 -1.7931 37 1 8.9447 5.6163 -3.2518 38 1 8.2480 8.7690 -2.6843 39 1 9.9279 8.9573 -3.2418 40 1 8.8687 7.7449 -4.0011 41 1 9.6419 10.7431 -0.8353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235504889.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:40 Heat of formation + Delta-G solvation = -99.384413 kcal Electronic energy + Delta-G solvation = -21530.917342 eV Core-core repulsion = 18025.795928 eV Total energy + Delta-G solvation = -3505.121414 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.89034 -40.80553 -38.25955 -37.83434 -36.89702 -36.09495 -33.74448 -31.73695 -29.24516 -27.98970 -27.48091 -25.76588 -24.81565 -23.28202 -22.16389 -21.72153 -20.84592 -19.29235 -18.75144 -18.07160 -17.59563 -17.42922 -17.09222 -16.68621 -16.57431 -15.68782 -15.57733 -15.16547 -14.90158 -14.67720 -14.50699 -14.34921 -13.76374 -13.47360 -13.31116 -13.02682 -12.93679 -12.80845 -12.69903 -12.45034 -12.27832 -12.01241 -11.96923 -11.87818 -11.85674 -11.76474 -11.65316 -11.45394 -11.01781 -10.62039 -10.11631 -8.81309 -7.81633 -5.27207 0.86707 1.33408 1.47795 1.49680 1.54334 1.57369 2.19432 2.53085 2.65572 3.32113 3.37351 3.60481 3.62993 3.67492 3.90480 4.08813 4.14404 4.28011 4.30954 4.31513 4.51197 4.57734 4.67671 4.69698 4.79730 4.81664 4.86960 4.89388 4.93314 5.25273 5.31454 5.31977 5.39614 5.49877 5.66047 5.73762 6.33934 6.49068 6.59825 7.14491 7.16619 7.89569 8.32245 9.22064 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.002395 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.800267 B =11689.296902 C =11810.817321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.498 3.502 4 O -0.532 6.532 5 C -0.145 4.145 6 H 0.147 0.853 7 C -0.090 4.090 8 C -0.163 4.163 9 H 0.146 0.854 10 C 0.542 3.458 11 O -0.578 6.578 12 N -0.713 5.713 13 C 0.132 3.868 14 C -0.130 4.130 15 C 0.150 3.850 16 N -0.620 5.620 17 C 0.175 3.825 18 C -0.259 4.259 19 H 0.073 0.927 20 C -0.057 4.057 21 N -0.939 5.939 22 Si 0.967 3.033 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.268 1.268 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.414 0.586 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.005 0.995 39 H 0.015 0.985 40 H 0.031 0.969 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.982 -18.840 4.207 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.342 3.658 4 O -0.422 6.422 5 C -0.164 4.164 6 H 0.165 0.835 7 C -0.128 4.128 8 C -0.184 4.184 9 H 0.164 0.836 10 C 0.329 3.671 11 O -0.458 6.458 12 N -0.363 5.363 13 C 0.008 3.992 14 C -0.171 4.171 15 C 0.023 3.977 16 N -0.343 5.343 17 C 0.030 3.970 18 C -0.389 4.389 19 H 0.091 0.909 20 C -0.251 4.251 21 N -0.586 5.586 22 Si 0.795 3.205 23 H -0.215 1.215 24 H -0.223 1.223 25 H -0.193 1.193 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.250 0.750 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.023 0.977 39 H 0.033 0.967 40 H 0.050 0.950 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -15.844 -19.041 3.792 25.059 hybrid contribution 0.184 1.309 0.518 1.419 sum -15.659 -17.733 4.310 24.047 Atomic orbital electron populations 1.23620 0.74260 1.05966 1.02742 1.86485 1.25283 1.32189 1.83422 1.22651 0.90516 0.81344 0.71271 1.90670 1.67467 1.37239 1.46810 1.21659 0.87900 0.99362 1.07523 0.83523 1.23282 1.03121 0.96813 0.89542 1.22266 0.96661 0.96209 1.03231 0.83625 1.19798 0.84927 0.82393 0.80012 1.90690 1.66972 1.41284 1.46891 1.45962 1.25592 1.11801 1.52974 1.21263 0.85051 0.96636 0.96218 1.22207 0.99436 0.93874 1.01562 1.20908 0.93584 0.85041 0.98154 1.44251 1.55682 1.05614 1.28786 1.20559 0.97173 0.90569 0.88686 1.19549 1.16197 0.92735 1.10460 0.90941 1.25732 1.00589 0.97448 1.01377 1.70244 1.35030 1.02883 1.50405 0.85283 0.79238 0.77418 0.78514 1.21458 1.22306 1.19317 0.91459 0.92029 0.84842 0.85343 0.84884 0.75008 0.91642 0.91670 0.92928 0.92817 0.93047 0.92229 0.97695 0.96664 0.95031 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.36 -6.19 10.57 -51.40 -0.54 -6.73 16 3 C 0.50 9.96 7.74 71.23 0.55 10.51 16 4 O -0.53 -13.15 16.01 21.98 0.35 -12.80 16 5 C -0.14 -2.61 5.81 -11.54 -0.07 -2.68 16 6 H 0.15 2.77 7.67 -2.38 -0.02 2.75 16 7 C -0.09 -1.22 9.94 30.61 0.30 -0.92 16 8 C -0.16 -3.05 5.70 -11.53 -0.07 -3.12 16 9 H 0.15 2.57 7.67 -2.39 -0.02 2.56 16 10 C 0.54 13.52 7.61 87.65 0.67 14.19 16 11 O -0.58 -18.39 16.26 -3.04 -0.05 -18.44 16 12 N -0.71 -17.20 5.56 -463.05 -2.57 -19.78 16 13 C 0.13 3.67 5.67 86.38 0.49 4.16 16 14 C -0.13 -4.34 5.65 30.60 0.17 -4.17 16 15 C 0.15 5.72 5.71 86.38 0.49 6.21 16 16 N -0.62 -30.54 2.93 -726.94 -2.13 -32.66 16 17 C 0.18 8.61 9.02 127.77 1.15 9.76 16 18 C -0.26 -14.00 9.68 84.03 0.81 -13.19 16 19 H 0.07 3.79 7.86 -2.91 -0.02 3.77 16 20 C -0.06 -3.15 5.06 84.86 0.43 -2.72 16 21 N -0.94 -55.15 10.67 21.65 0.23 -54.92 16 22 Si 0.97 44.75 29.58 68.60 2.03 46.78 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H 0.07 0.71 8.13 -2.39 -0.02 0.69 16 27 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 28 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.41 8.43 8.47 -92.71 -0.79 7.64 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 1.91 8.03 -2.39 -0.02 1.89 16 37 H 0.06 2.04 7.86 -2.39 -0.02 2.02 16 38 H 0.00 0.25 7.40 -2.39 -0.02 0.24 16 39 H 0.01 0.79 7.21 -2.38 -0.02 0.78 16 40 H 0.03 1.30 7.84 -2.39 -0.02 1.29 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -70.88 352.62 3.70 -67.18 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.24 Total: 11.83 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 6.14 Total: 19.54 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -4.47 Total: -107.36 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.24 Total: -37.97 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.88 3.70 -67.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235504889.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.204 kcal (2) G-P(sol) polarization free energy of solvation -70.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds