Wall clock time and date at job start Tue Mar 31 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00160 * 2 1 4 4 O 1.20821 * 119.99992 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99940 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46903 * 180.02562 * 5 3 2 7 7 N 1.46507 * 109.46865 * 179.97438 * 6 5 3 8 8 C 1.36936 * 120.00127 * 270.00048 * 7 6 5 9 9 H 1.08003 * 120.00145 * 322.62009 * 8 7 6 10 10 C 1.38811 * 119.99711 * 142.62008 * 8 7 6 11 11 N 1.31614 * 120.00096 * 157.40291 * 10 8 7 12 12 Si 1.86803 * 119.99832 * 337.39888 * 10 8 7 13 13 H 1.48500 * 109.46894 * 95.72056 * 12 10 8 14 14 H 1.48508 * 109.46951 * 215.71877 * 12 10 8 15 15 H 1.48495 * 109.47581 * 335.71545 * 12 10 8 16 16 C 1.46500 * 119.99453 * 90.00711 * 7 6 5 17 17 C 1.52998 * 109.47378 * 83.78398 * 16 7 6 18 18 N 1.46501 * 109.47024 * 179.97438 * 17 16 7 19 19 C 1.34781 * 119.99989 * 179.97438 * 18 17 16 20 20 O 1.21287 * 119.99566 * 0.02562 * 19 18 17 21 21 C 1.50694 * 120.00341 * 180.02562 * 19 18 17 22 22 C 1.53001 * 117.50328 * 248.62853 * 21 19 18 23 23 C 1.52995 * 117.50138 * 180.02562 * 21 19 18 24 24 H 1.08996 * 109.47230 * 299.99423 * 1 2 3 25 25 H 1.08995 * 109.47361 * 59.99877 * 1 2 3 26 26 H 1.09003 * 109.47220 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46945 * 60.00837 * 5 3 2 28 28 H 1.09003 * 109.47396 * 300.00393 * 5 3 2 29 29 H 1.08998 * 109.46824 * 60.00883 * 6 5 3 30 30 H 1.08990 * 109.47520 * 300.00321 * 6 5 3 31 31 H 0.97002 * 120.00445 * 180.02562 * 11 10 8 32 32 H 1.09005 * 109.47401 * 323.78088 * 16 7 6 33 33 H 1.09001 * 109.46900 * 203.78464 * 16 7 6 34 34 H 1.08994 * 109.47295 * 299.99568 * 17 16 7 35 35 H 1.09004 * 109.47127 * 60.00063 * 17 16 7 36 36 H 0.96999 * 119.99913 * 0.02562 * 18 17 16 37 37 H 1.09002 * 115.54505 * 34.33129 * 21 19 18 38 38 H 1.09002 * 117.49283 * 359.97438 * 22 21 19 39 39 H 1.08996 * 117.50182 * 145.01854 * 22 21 19 40 40 H 1.09003 * 117.49996 * 214.98445 * 23 21 19 41 41 H 1.09003 * 117.49923 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4632 2.8186 0.0023 8 6 6.1460 2.8543 1.1887 9 1 5.7425 3.4017 2.0278 10 6 7.3567 2.1868 1.3130 11 7 8.2186 2.5537 2.2375 12 14 7.7627 0.7678 0.1680 13 1 8.5768 1.2668 -0.9693 14 1 8.5302 -0.2638 0.9111 15 1 6.5041 0.1722 -0.3479 16 6 6.1956 2.8572 -1.2659 17 6 6.2405 4.2956 -1.7854 18 7 6.9735 4.3342 -3.0533 19 6 7.1401 5.5050 -3.6999 20 8 6.6837 6.5265 -3.2319 21 6 7.8935 5.5447 -5.0044 22 6 9.2535 6.2457 -5.0139 23 6 8.0493 6.9039 -5.6892 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9563 0.7806 -0.8893 28 1 3.9557 0.7808 0.8908 29 1 3.6102 3.2358 0.8911 30 1 3.6107 3.2364 -0.8888 31 1 9.0649 2.0876 2.3241 32 1 5.6922 2.2229 -1.9957 33 1 7.2118 2.4954 -1.1097 34 1 5.2244 4.6574 -1.9416 35 1 6.7439 4.9299 -1.0556 36 1 7.3382 3.5171 -3.4277 37 1 7.7735 4.6697 -5.6434 38 1 9.6030 6.6785 -4.0765 39 1 10.0285 5.8320 -5.6590 40 1 8.0317 6.9234 -6.7790 41 1 7.6064 7.7694 -5.1964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308012103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:10 Heat of formation + Delta-G solvation = -77.537331 kcal Electronic energy + Delta-G solvation = -22392.408483 eV Core-core repulsion = 18888.234429 eV Total energy + Delta-G solvation = -3504.174054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18371 -39.68549 -37.03650 -36.30617 -35.90425 -34.23571 -32.18965 -30.87552 -28.52029 -27.45435 -24.76224 -24.52456 -22.54180 -22.31174 -21.21624 -20.05135 -19.66287 -17.56236 -17.39790 -16.64326 -16.36863 -16.23991 -15.84353 -15.41527 -15.09978 -14.59013 -14.16982 -13.96961 -13.79543 -13.26983 -13.16119 -12.75810 -12.49324 -12.31399 -12.09917 -11.89417 -11.86294 -11.64038 -11.50895 -11.04457 -10.71165 -10.68935 -10.67557 -10.52168 -10.25836 -10.17700 -10.06958 -9.75136 -9.60277 -8.73909 -8.62640 -7.09601 -6.12766 -3.57514 2.49447 2.68958 2.94640 3.16092 3.34537 3.37222 3.37944 3.85352 4.37163 4.66673 4.73774 4.82403 4.91808 5.11079 5.12441 5.13612 5.18514 5.29331 5.49070 5.49698 5.57897 5.60342 5.69148 5.69639 5.85641 5.91939 6.03129 6.04559 6.15162 6.42454 6.51420 6.58329 6.63948 6.77427 6.83940 7.77594 7.88344 8.00742 8.25944 8.48696 8.80798 9.54436 9.91464 11.02010 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.004612 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.038043 B = 6069.549907 C = 7573.141950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.513 6.513 5 C -0.137 4.137 6 C 0.162 3.838 7 N -0.593 5.593 8 C -0.278 4.278 9 H 0.084 0.916 10 C 0.040 3.960 11 N -0.890 5.890 12 Si 0.874 3.126 13 H -0.286 1.286 14 H -0.299 1.299 15 H -0.266 1.266 16 C 0.125 3.875 17 C 0.099 3.901 18 N -0.722 5.722 19 C 0.537 3.463 20 O -0.544 6.544 21 C -0.194 4.194 22 C -0.154 4.154 23 C -0.150 4.150 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.397 0.603 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 -2.853 -13.270 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.401 6.401 5 C -0.177 4.177 6 C 0.036 3.964 7 N -0.314 5.314 8 C -0.406 4.406 9 H 0.101 0.899 10 C -0.162 4.162 11 N -0.530 5.530 12 Si 0.703 3.297 13 H -0.214 1.214 14 H -0.226 1.226 15 H -0.190 1.190 16 C -0.001 4.001 17 C -0.026 4.026 18 N -0.372 5.372 19 C 0.323 3.677 20 O -0.422 6.422 21 C -0.215 4.215 22 C -0.192 4.192 23 C -0.187 4.187 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.230 0.770 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.109 -1.850 -12.764 13.872 hybrid contribution 0.335 -1.458 -0.731 1.665 sum -4.773 -3.309 -13.495 14.692 Atomic orbital electron populations 1.23175 0.77391 1.03116 1.02279 1.86574 1.22763 1.34557 1.84415 1.24417 0.92668 0.80841 0.71393 1.90628 1.67475 1.36319 1.45701 1.22415 0.84898 1.04763 1.05642 1.20817 0.84056 0.90298 1.01278 1.44022 1.00693 1.84822 1.01848 1.18832 1.03352 1.27850 0.90571 0.89857 1.25510 0.96696 0.97602 0.96394 1.69872 1.07634 1.40041 1.35469 0.86991 0.78249 0.84187 0.80259 1.21375 1.22643 1.19007 1.21395 0.97620 0.92854 0.88270 1.22238 0.95947 1.01068 0.83372 1.46014 1.57054 1.09554 1.24596 1.19620 0.79682 0.83559 0.84871 1.90690 1.49967 1.33546 1.67997 1.22228 1.02019 0.99250 0.98035 1.22924 0.90183 1.02634 1.03415 1.22917 1.01143 0.95136 0.99522 0.92104 0.92251 0.88618 0.88802 0.87227 0.91539 0.93014 0.92476 0.93896 0.91634 0.92080 0.90618 0.76997 0.86074 0.88151 0.87939 0.88163 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -5.35 10.56 -39.25 -0.41 -5.76 16 3 C 0.46 7.64 7.96 36.00 0.29 7.93 16 4 O -0.51 -9.52 15.73 -18.75 -0.29 -9.82 16 5 C -0.14 -2.32 6.13 -27.88 -0.17 -2.49 16 6 C 0.16 3.11 4.98 -4.04 -0.02 3.09 16 7 N -0.59 -12.94 2.08 -173.24 -0.36 -13.30 16 8 C -0.28 -7.24 9.91 -15.06 -0.15 -7.39 16 9 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 10 C 0.04 1.07 5.26 -17.43 -0.09 0.98 16 11 N -0.89 -25.90 13.97 55.49 0.78 -25.13 16 12 Si 0.87 20.21 25.05 -169.99 -4.26 15.95 16 13 H -0.29 -6.35 6.69 56.52 0.38 -5.97 16 14 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 C 0.13 2.44 4.40 -4.04 -0.02 2.42 16 17 C 0.10 1.87 5.99 -4.04 -0.02 1.84 16 18 N -0.72 -11.35 5.56 -60.29 -0.33 -11.69 16 19 C 0.54 8.71 7.61 -10.99 -0.08 8.62 16 20 O -0.54 -11.06 16.26 5.55 0.09 -10.97 16 21 C -0.19 -2.27 6.19 -91.78 -0.57 -2.84 16 22 C -0.15 -1.59 10.23 -26.75 -0.27 -1.87 16 23 C -0.15 -1.58 10.04 -26.76 -0.27 -1.85 16 24 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 25 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 29 H 0.07 1.35 8.00 -51.93 -0.42 0.93 16 30 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 31 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.07 1.39 3.60 -51.93 -0.19 1.20 16 34 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.40 5.08 8.47 -40.82 -0.35 4.73 16 37 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.11 1.32 7.67 -51.93 -0.40 0.92 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -32.35 349.14 -6.27 -38.62 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.41 Total: 6.95 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -0.32 Total: 9.88 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.08 Total: -50.12 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.62 Total: -26.55 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.26 Total: 15.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.35 -6.27 -38.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308012103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.918 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds