Wall clock time and date at job start Tue Mar 31 2020 03:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46756 * 2 1 4 4 C 1.50699 * 109.47511 * 240.00197 * 2 1 3 5 5 O 1.21231 * 120.00056 * 269.36469 * 4 2 1 6 6 N 1.34775 * 120.00388 * 89.35959 * 4 2 1 7 7 C 1.34768 * 120.00586 * 180.02562 * 6 4 2 8 8 N 1.34779 * 120.00386 * 180.02562 * 7 6 4 9 9 O 1.21543 * 119.99557 * 359.97438 * 7 6 4 10 10 N 1.46896 * 109.47261 * 119.99614 * 2 1 3 11 11 C 1.46959 * 110.99925 * 171.53845 * 10 2 1 12 12 C 1.53056 * 109.38506 * 176.82278 * 11 10 2 13 13 N 1.46953 * 109.35968 * 58.39065 * 12 11 10 14 14 C 1.46903 * 110.99917 * 176.80902 * 13 12 11 15 15 C 1.50698 * 109.47369 * 190.00180 * 14 13 12 16 16 H 1.08001 * 119.99804 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00194 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00503 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99866 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46928 * 90.00307 * 19 17 15 21 21 H 1.48498 * 109.47241 * 210.00262 * 19 17 15 22 22 H 1.48495 * 109.47243 * 330.00373 * 19 17 15 23 23 C 1.46958 * 110.88290 * 300.68107 * 13 12 11 24 24 C 1.46952 * 111.01920 * 47.73122 * 10 2 1 25 25 H 1.08992 * 109.47381 * 299.99606 * 1 2 3 26 26 H 1.08997 * 109.47560 * 60.00671 * 1 2 3 27 27 H 1.09004 * 109.46756 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99521 * 0.02562 * 6 4 2 29 29 H 0.97000 * 119.99682 * 359.97438 * 8 7 6 30 30 H 0.97001 * 119.99970 * 179.97438 * 8 7 6 31 31 H 1.09005 * 109.49062 * 56.84928 * 11 10 2 32 32 H 1.09003 * 109.49488 * 296.80544 * 11 10 2 33 33 H 1.08997 * 109.48804 * 178.35551 * 12 11 10 34 34 H 1.08999 * 109.48567 * 298.42955 * 12 11 10 35 35 H 1.09002 * 109.47328 * 310.00427 * 14 13 12 36 36 H 1.09003 * 109.46543 * 70.00718 * 14 13 12 37 37 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 38 38 H 1.09008 * 109.48526 * 179.28531 * 23 13 12 39 39 H 1.09000 * 109.48911 * 299.33157 * 23 13 12 40 40 H 1.09003 * 109.47283 * 63.19423 * 24 10 2 41 41 H 1.09001 * 109.50398 * 303.15788 * 24 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.2455 -1.9033 -1.1971 6 7 2.2448 -0.0195 -2.3680 7 6 2.6936 -0.6548 -3.4685 8 7 2.9065 0.0363 -4.6059 9 8 2.9073 -1.8508 -3.4351 10 7 2.0197 -0.6924 1.1994 11 6 3.4747 -0.8893 1.1367 12 6 3.9556 -1.5405 2.4356 13 7 3.2613 -2.8219 2.6243 14 6 3.7515 -3.5146 3.8235 15 6 3.2039 -4.9183 3.8518 16 1 2.5568 -5.2617 3.0581 17 6 3.5289 -5.7643 4.8908 18 7 3.0515 -6.9895 4.9154 19 14 4.6487 -5.1706 6.2632 20 1 3.8295 -4.5631 7.3425 21 1 5.4139 -6.3199 6.8098 22 1 5.5928 -4.1570 5.7282 23 6 1.8063 -2.6250 2.6875 24 6 1.3255 -1.9737 1.3887 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.0746 0.9352 -2.3946 29 1 2.7363 0.9908 -4.6325 30 1 3.2299 -0.4210 -5.3979 31 1 3.9670 0.0749 1.0094 32 1 3.7182 -1.5360 0.2938 33 1 5.0302 -1.7140 2.3792 34 1 3.7368 -0.8812 3.2756 35 1 4.8407 -3.5499 3.8030 36 1 3.4218 -2.9781 4.7132 37 1 3.2805 -7.5847 5.6462 38 1 1.3141 -3.5892 2.8148 39 1 1.5632 -1.9783 3.5307 40 1 1.5442 -2.6330 0.5487 41 1 0.2508 -1.8006 1.4448 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330675542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:09 Heat of formation + Delta-G solvation = -34.701249 kcal Electronic energy + Delta-G solvation = -23472.686406 eV Core-core repulsion = 20002.662615 eV Total energy + Delta-G solvation = -3470.023791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49977 -39.50031 -37.68868 -35.34339 -34.85363 -33.62756 -32.56937 -31.19091 -30.29232 -27.94818 -25.68559 -24.57812 -22.99915 -21.77117 -21.01087 -20.57340 -19.51279 -18.71650 -17.71888 -16.73538 -16.41378 -16.28701 -15.92773 -14.98719 -14.81426 -14.51517 -14.38484 -14.32379 -13.98248 -13.70246 -13.53429 -12.71265 -12.51800 -12.42457 -12.10434 -11.98429 -11.51859 -11.31711 -11.10199 -10.87121 -10.68755 -10.58358 -10.36558 -10.22022 -10.08638 -10.02981 -9.87569 -9.72615 -9.16931 -8.50042 -8.09571 -7.24093 -5.97084 -3.93897 1.93230 2.28508 3.08911 3.33793 3.41042 3.43961 3.82117 3.91952 4.39827 4.49014 4.70112 4.84570 4.87623 5.21333 5.34825 5.39451 5.54016 5.61065 5.70985 5.72540 5.85099 5.88636 6.05962 6.07759 6.16117 6.28851 6.39011 6.43863 6.64013 6.74487 6.91744 7.01034 7.02556 7.17173 7.22683 7.69546 7.90239 8.01923 8.16222 8.17720 8.75504 9.12725 9.64728 11.16182 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.003884 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.671333 B = 7206.584684 C = 7488.399931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.104 0.896 4 C 0.481 3.519 5 O -0.444 6.444 6 N -0.693 5.693 7 C 0.691 3.309 8 N -0.861 5.861 9 O -0.530 6.530 10 N -0.507 5.507 11 C 0.044 3.956 12 C 0.059 3.941 13 N -0.526 5.526 14 C 0.163 3.837 15 C -0.507 4.507 16 H 0.081 0.919 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.876 3.124 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.268 1.268 23 C 0.070 3.930 24 C 0.034 3.966 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.407 0.593 29 H 0.397 0.603 30 H 0.418 0.582 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.027 0.973 36 H -0.016 1.016 37 H 0.263 0.737 38 H 0.092 0.908 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 23.520 -15.644 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.043 4.043 3 H 0.122 0.878 4 C 0.265 3.735 5 O -0.310 6.310 6 N -0.361 5.361 7 C 0.389 3.611 8 N -0.432 5.432 9 O -0.401 6.401 10 N -0.231 5.231 11 C -0.084 4.084 12 C -0.070 4.070 13 N -0.251 5.251 14 C 0.037 3.963 15 C -0.545 4.545 16 H 0.099 0.901 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.704 3.296 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.058 4.058 24 C -0.093 4.093 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.241 0.759 29 H 0.225 0.775 30 H 0.251 0.749 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.001 0.999 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.682 21.504 -15.245 26.616 hybrid contribution 0.692 1.202 0.315 1.422 sum -2.991 22.706 -14.930 27.339 Atomic orbital electron populations 1.21908 0.91466 1.03927 1.03102 1.22033 0.97728 0.99002 0.85576 0.87781 1.22760 0.77735 0.88738 0.84222 1.90881 1.43833 1.14191 1.82090 1.44534 1.65658 1.14014 1.11913 1.16316 0.78481 0.85669 0.80642 1.43130 1.74186 1.12700 1.13185 1.91161 1.53549 1.12323 1.83061 1.62775 1.05697 1.23769 1.30859 1.22394 0.86890 0.99469 0.99654 1.22036 0.98573 0.91213 0.95177 1.62076 1.03656 1.17822 1.41552 1.20160 0.95791 0.94768 0.85594 1.21058 1.30145 0.94575 1.08726 0.90103 1.24902 0.95888 0.94782 0.97819 1.69901 1.45318 1.06239 1.32596 0.86848 0.81530 0.78536 0.82731 1.20398 1.21227 1.19239 1.22013 0.89504 1.00151 0.94176 1.22670 0.97391 0.89100 1.00170 0.89901 0.91843 0.90987 0.75868 0.77458 0.74939 0.91455 0.92215 0.91010 0.95218 0.95462 0.99858 0.92747 0.88964 0.95581 0.90657 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.50 37.16 0.32 -0.91 16 2 C 0.07 0.72 3.00 -68.87 -0.21 0.51 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.48 6.16 5.89 -10.99 -0.06 6.09 16 5 O -0.44 -8.41 10.87 -18.21 -0.20 -8.61 16 6 N -0.69 -6.05 5.24 -15.78 -0.08 -6.14 16 7 C 0.69 7.79 8.78 -86.92 -0.76 7.03 16 8 N -0.86 -4.65 8.88 27.63 0.25 -4.41 16 9 O -0.53 -9.58 15.58 -18.48 -0.29 -9.87 16 10 N -0.51 -7.32 4.80 -227.88 -1.09 -8.41 16 11 C 0.04 0.69 5.07 -3.76 -0.02 0.67 16 12 C 0.06 1.10 5.61 -3.77 -0.02 1.08 16 13 N -0.53 -11.98 4.70 -235.90 -1.11 -13.09 16 14 C 0.16 4.19 3.79 -4.97 -0.02 4.17 16 15 C -0.51 -15.07 9.03 -34.44 -0.31 -15.38 16 16 H 0.08 2.63 7.38 -52.49 -0.39 2.24 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -28.51 13.96 55.43 0.77 -27.73 16 19 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 23 C 0.07 1.45 5.43 -3.77 -0.02 1.43 16 24 C 0.03 0.58 4.70 -3.77 -0.02 0.56 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.75 6.25 -51.93 -0.32 0.42 16 28 H 0.41 1.38 8.71 -40.82 -0.36 1.02 16 29 H 0.40 0.52 8.84 -40.82 -0.36 0.16 16 30 H 0.42 2.01 8.93 -40.82 -0.36 1.65 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.12 5.91 -51.93 -0.31 0.82 16 33 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 36 H -0.02 -0.41 7.55 -51.93 -0.39 -0.80 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 38 H 0.09 2.12 6.79 -51.92 -0.35 1.76 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.52 5.70 -51.93 -0.30 1.23 16 41 H 0.07 1.10 5.99 -51.93 -0.31 0.79 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -40.39 321.87 -8.74 -49.12 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.94 Total: -0.46 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -1.22 Total: 7.18 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -1.27 Total: -59.79 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.49 Total: -18.48 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -40.39 -8.74 -49.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330675542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.421 kcal (2) G-P(sol) polarization free energy of solvation -40.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds