Wall clock time and date at job start Tue Mar 31 2020 03:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46756 * 2 1 4 4 C 1.50699 * 109.47511 * 240.00197 * 2 1 3 5 5 O 1.21231 * 120.00056 * 269.36469 * 4 2 1 6 6 N 1.34775 * 120.00388 * 89.35959 * 4 2 1 7 7 C 1.34768 * 120.00586 * 180.02562 * 6 4 2 8 8 N 1.34779 * 120.00386 * 180.02562 * 7 6 4 9 9 O 1.21543 * 119.99557 * 359.97438 * 7 6 4 10 10 N 1.46896 * 109.47261 * 119.99614 * 2 1 3 11 11 C 1.46959 * 110.99925 * 171.53845 * 10 2 1 12 12 C 1.53056 * 109.38506 * 176.82278 * 11 10 2 13 13 N 1.46953 * 109.35968 * 58.39065 * 12 11 10 14 14 C 1.46903 * 110.99917 * 176.80902 * 13 12 11 15 15 C 1.50698 * 109.47369 * 190.00180 * 14 13 12 16 16 H 1.08001 * 119.99804 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00194 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00503 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99866 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46928 * 90.00307 * 19 17 15 21 21 H 1.48498 * 109.47241 * 210.00262 * 19 17 15 22 22 H 1.48495 * 109.47243 * 330.00373 * 19 17 15 23 23 C 1.46958 * 110.88290 * 300.68107 * 13 12 11 24 24 C 1.46952 * 111.01920 * 47.73122 * 10 2 1 25 25 H 1.08992 * 109.47381 * 299.99606 * 1 2 3 26 26 H 1.08997 * 109.47560 * 60.00671 * 1 2 3 27 27 H 1.09004 * 109.46756 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99521 * 0.02562 * 6 4 2 29 29 H 0.97000 * 119.99682 * 359.97438 * 8 7 6 30 30 H 0.97001 * 119.99970 * 179.97438 * 8 7 6 31 31 H 1.09005 * 109.49062 * 56.84928 * 11 10 2 32 32 H 1.09003 * 109.49488 * 296.80544 * 11 10 2 33 33 H 1.08997 * 109.48804 * 178.35551 * 12 11 10 34 34 H 1.08999 * 109.48567 * 298.42955 * 12 11 10 35 35 H 1.09002 * 109.47328 * 310.00427 * 14 13 12 36 36 H 1.09003 * 109.46543 * 70.00718 * 14 13 12 37 37 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 38 38 H 1.09008 * 109.48526 * 179.28531 * 23 13 12 39 39 H 1.09000 * 109.48911 * 299.33157 * 23 13 12 40 40 H 1.09003 * 109.47283 * 63.19423 * 24 10 2 41 41 H 1.09001 * 109.50398 * 303.15788 * 24 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.2455 -1.9033 -1.1971 6 7 2.2448 -0.0195 -2.3680 7 6 2.6936 -0.6548 -3.4685 8 7 2.9065 0.0363 -4.6059 9 8 2.9073 -1.8508 -3.4351 10 7 2.0197 -0.6924 1.1994 11 6 3.4747 -0.8893 1.1367 12 6 3.9556 -1.5405 2.4356 13 7 3.2613 -2.8219 2.6243 14 6 3.7515 -3.5146 3.8235 15 6 3.2039 -4.9183 3.8518 16 1 2.5568 -5.2617 3.0581 17 6 3.5289 -5.7643 4.8908 18 7 3.0515 -6.9895 4.9154 19 14 4.6487 -5.1706 6.2632 20 1 3.8295 -4.5631 7.3425 21 1 5.4139 -6.3199 6.8098 22 1 5.5928 -4.1570 5.7282 23 6 1.8063 -2.6250 2.6875 24 6 1.3255 -1.9737 1.3887 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.0746 0.9352 -2.3946 29 1 2.7363 0.9908 -4.6325 30 1 3.2299 -0.4210 -5.3979 31 1 3.9670 0.0749 1.0094 32 1 3.7182 -1.5360 0.2938 33 1 5.0302 -1.7140 2.3792 34 1 3.7368 -0.8812 3.2756 35 1 4.8407 -3.5499 3.8030 36 1 3.4218 -2.9781 4.7132 37 1 3.2805 -7.5847 5.6462 38 1 1.3141 -3.5892 2.8148 39 1 1.5632 -1.9783 3.5307 40 1 1.5442 -2.6330 0.5487 41 1 0.2508 -1.8006 1.4448 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330675542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:08 Heat of formation + Delta-G solvation = -72.824405 kcal Electronic energy + Delta-G solvation = -23474.339550 eV Core-core repulsion = 20002.662615 eV Total energy + Delta-G solvation = -3471.676935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.46002 -40.61913 -39.02062 -36.73249 -35.87443 -34.70441 -34.34599 -32.52469 -31.71618 -29.72070 -26.85607 -25.99693 -24.36490 -23.20290 -22.44616 -21.54008 -20.89881 -19.56934 -18.96851 -18.61816 -17.45404 -17.17428 -16.98912 -16.47297 -16.07240 -15.92906 -15.82942 -15.45807 -15.42128 -15.11641 -15.06729 -14.47496 -14.06471 -13.59184 -13.36791 -13.23682 -12.86649 -12.70876 -12.56964 -12.42425 -12.21936 -12.04716 -11.85636 -11.77165 -11.47065 -11.32554 -11.25346 -11.13080 -10.80425 -10.74961 -9.33137 -8.98069 -8.29658 -6.34005 0.97932 1.32503 1.35811 1.47127 1.51649 2.21748 2.33632 2.75761 3.02198 3.20489 3.25485 3.74497 3.86384 3.93596 4.17545 4.21743 4.33399 4.48064 4.50685 4.56451 4.75497 4.77810 4.84498 4.92240 4.95327 4.99349 5.02851 5.11958 5.27866 5.29894 5.48078 5.52030 5.83288 5.85061 5.88652 6.03048 6.38239 6.54980 6.66586 6.71994 7.13302 7.29570 7.44403 8.87577 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.003884 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.671333 B = 7206.584684 C = 7488.399931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.072 3.928 3 H 0.159 0.841 4 C 0.482 3.518 5 O -0.513 6.513 6 N -0.669 5.669 7 C 0.686 3.314 8 N -0.828 5.828 9 O -0.605 6.605 10 N -0.501 5.501 11 C 0.052 3.948 12 C 0.056 3.944 13 N -0.554 5.554 14 C 0.175 3.825 15 C -0.520 4.520 16 H 0.029 0.971 17 C 0.005 3.995 18 N -0.950 5.950 19 Si 0.955 3.045 20 H -0.263 1.263 21 H -0.280 1.280 22 H -0.250 1.250 23 C 0.074 3.926 24 C 0.049 3.951 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.043 0.957 28 H 0.436 0.564 29 H 0.422 0.578 30 H 0.424 0.576 31 H 0.112 0.888 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.028 0.972 36 H -0.010 1.010 37 H 0.268 0.732 38 H 0.050 0.950 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 28.468 -15.624 32.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 H 0.176 0.824 4 C 0.268 3.732 5 O -0.383 6.383 6 N -0.339 5.339 7 C 0.384 3.616 8 N -0.400 5.400 9 O -0.482 6.482 10 N -0.224 5.224 11 C -0.076 4.076 12 C -0.072 4.072 13 N -0.279 5.279 14 C 0.048 3.952 15 C -0.558 4.558 16 H 0.047 0.953 17 C -0.192 4.192 18 N -0.590 5.590 19 Si 0.778 3.222 20 H -0.188 1.188 21 H -0.205 1.205 22 H -0.173 1.173 23 C -0.055 4.055 24 C -0.079 4.079 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.062 0.938 28 H 0.276 0.724 29 H 0.255 0.745 30 H 0.258 0.742 31 H 0.130 0.870 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.008 0.992 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.224 26.610 -15.295 30.861 hybrid contribution 0.464 -0.290 0.128 0.562 sum -2.760 26.320 -15.166 30.502 Atomic orbital electron populations 1.21955 0.89724 1.02882 1.05639 1.22392 0.99055 1.00144 0.82401 0.82417 1.23260 0.76341 0.87976 0.85631 1.90891 1.46791 1.17383 1.83238 1.44145 1.64217 1.15261 1.10310 1.16633 0.78000 0.84969 0.82004 1.42851 1.71969 1.13781 1.11426 1.91131 1.56782 1.15918 1.84353 1.62765 1.04662 1.21504 1.33471 1.22321 0.88143 1.00610 0.96549 1.22158 0.98376 0.89429 0.97237 1.61959 1.05012 1.20756 1.40163 1.19892 0.95361 0.92696 0.87236 1.21260 1.29762 0.97174 1.07618 0.95269 1.25932 0.97652 0.94679 1.00919 1.70070 1.47079 1.07905 1.33983 0.85602 0.79349 0.78526 0.78742 1.18814 1.20505 1.17340 1.21908 0.88355 0.98586 0.96626 1.22391 0.98976 0.89990 0.96510 0.88348 0.88338 0.93821 0.72387 0.74543 0.74242 0.86982 0.95595 0.90844 0.93827 0.95431 0.99207 0.92353 0.93123 0.94784 0.94281 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.50 71.98 0.61 -1.28 16 2 C 0.07 1.23 3.00 44.17 0.13 1.36 16 3 H 0.16 1.09 8.14 -2.38 -0.02 1.07 16 4 C 0.48 11.64 5.89 87.66 0.52 12.15 16 5 O -0.51 -20.24 10.87 19.88 0.22 -20.02 16 6 N -0.67 -9.91 5.24 -440.54 -2.31 -12.22 16 7 C 0.69 14.65 8.78 179.06 1.57 16.23 16 8 N -0.83 -6.82 8.88 -184.79 -1.64 -8.46 16 9 O -0.61 -22.69 15.58 18.91 0.29 -22.39 16 10 N -0.50 -13.38 4.80 -874.87 -4.20 -17.58 16 11 C 0.05 1.55 5.07 86.31 0.44 1.99 16 12 C 0.06 2.03 5.61 86.31 0.48 2.52 16 13 N -0.55 -25.97 4.70 -900.26 -4.23 -30.20 16 14 C 0.18 9.16 3.79 85.56 0.32 9.48 16 15 C -0.52 -32.57 9.03 25.60 0.23 -32.34 16 16 H 0.03 2.06 7.38 -2.91 -0.02 2.04 16 17 C 0.01 0.32 5.47 84.65 0.46 0.78 16 18 N -0.95 -62.50 13.96 21.45 0.30 -62.20 16 19 Si 0.96 46.21 27.47 68.60 1.88 48.10 16 20 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 23 C 0.07 3.18 5.43 86.31 0.47 3.65 16 24 C 0.05 1.72 4.70 86.31 0.41 2.13 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.04 0.84 6.25 -2.38 -0.01 0.83 16 28 H 0.44 0.84 8.71 -92.70 -0.81 0.03 16 29 H 0.42 -0.61 8.84 -92.71 -0.82 -1.43 16 30 H 0.42 3.23 8.93 -92.71 -0.83 2.40 16 31 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.03 0.98 5.91 -2.39 -0.01 0.97 16 33 H 0.07 2.58 8.07 -2.39 -0.02 2.57 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.03 1.43 7.08 -2.39 -0.02 1.41 16 36 H -0.01 -0.49 7.55 -2.39 -0.02 -0.51 16 37 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 38 H 0.05 2.55 6.79 -2.38 -0.02 2.53 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.04 1.69 5.70 -2.39 -0.01 1.68 16 41 H 0.10 2.93 5.99 -2.39 -0.01 2.92 16 Total: -1.00 -98.46 321.87 -5.46 -103.93 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -1.43 Total: 4.40 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 5.65 Total: 16.65 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -12.08 Total: -130.66 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: 0.51 Total: -42.41 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.88 Total: 48.10 kcal Total: -98.46 -5.46 -103.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330675542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.103 kcal (2) G-P(sol) polarization free energy of solvation -98.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds