Wall clock time and date at job start Tue Mar 31 2020 03:03:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46499 * 109.46840 * 2 1
4 4 C 1.34781 * 119.99786 * 90.00416 * 3 2 1
5 5 O 1.21590 * 119.99995 * 179.97438 * 4 3 2
6 6 N 1.34777 * 120.00169 * 359.97438 * 4 3 2
7 7 C 1.46497 * 120.00027 * 180.02562 * 6 4 3
8 8 C 1.50702 * 109.46826 * 180.02562 * 7 6 4
9 9 O 1.21286 * 120.00339 * 359.97438 * 8 7 6
10 10 N 1.34781 * 119.99628 * 180.02562 * 8 7 6
11 11 C 1.37096 * 119.99656 * 179.97438 * 10 8 7
12 12 H 1.08004 * 120.00175 * 0.02562 * 11 10 8
13 13 C 1.38953 * 119.99832 * 179.97438 * 11 10 8
14 14 N 1.31411 * 119.99912 * 180.02562 * 13 11 10
15 15 Si 1.86796 * 120.00107 * 0.02562 * 13 11 10
16 16 H 1.48500 * 109.47239 * 89.99365 * 15 13 11
17 17 H 1.48498 * 109.47319 * 209.99701 * 15 13 11
18 18 H 1.48507 * 109.47217 * 329.99626 * 15 13 11
19 19 C 1.46504 * 120.00381 * 269.99975 * 3 2 1
20 20 H 1.08999 * 110.26903 * 359.36568 * 19 3 2
21 21 C 1.54594 * 110.30902 * 237.17060 * 19 3 2
22 22 C 1.54940 * 102.92106 * 219.12252 * 21 19 3
23 23 N 1.48539 * 103.22252 * 37.41921 * 22 21 19
24 24 C 1.47904 * 105.81955 * 320.78937 * 23 22 21
25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3
26 26 H 1.09001 * 109.47194 * 299.99493 * 1 2 3
27 27 H 1.08992 * 109.47399 * 59.99666 * 1 2 3
28 28 H 1.09002 * 109.47398 * 120.00326 * 2 1 3
29 29 H 1.09001 * 109.47194 * 240.00507 * 2 1 3
30 30 H 0.96998 * 119.99511 * 0.02562 * 6 4 3
31 31 H 1.09002 * 109.46833 * 299.99844 * 7 6 4
32 32 H 1.08992 * 109.47528 * 60.00137 * 7 6 4
33 33 H 0.96997 * 120.00360 * 359.97438 * 10 8 7
34 34 H 0.97001 * 119.99770 * 180.02562 * 14 13 11
35 35 H 1.08997 * 110.72587 * 337.48723 * 21 19 3
36 36 H 1.09002 * 110.71863 * 100.76946 * 21 19 3
37 37 H 1.08995 * 110.66833 * 278.98271 * 22 21 19
38 38 H 1.08999 * 110.80723 * 155.91788 * 22 21 19
39 39 H 1.00900 * 110.99815 * 200.27628 * 23 22 21
40 40 H 1.09001 * 109.91702 * 265.97539 * 24 23 22
41 41 H 1.09000 * 110.07713 * 144.78187 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2429 2.0165 1.1673
5 8 2.6486 3.1628 1.1673
6 7 2.0179 1.3813 2.3345
7 6 2.2616 2.0721 3.6032
8 6 1.9354 1.1486 4.7486
9 8 1.5380 0.0243 4.5269
10 7 2.0843 1.5725 6.0193
11 6 1.7870 0.7326 7.0613
12 1 1.4339 -0.2688 6.8639
13 6 1.9410 1.1694 8.3714
14 7 1.6566 0.3641 9.3701
15 14 2.5524 2.9011 8.7128
16 1 1.3942 3.8262 8.8029
17 1 3.3005 2.9181 9.9954
18 1 3.4485 3.3359 7.6113
19 6 2.2624 2.0719 -1.2687
20 1 2.0409 1.4114 -2.1070
21 6 3.7273 2.5606 -1.3403
22 6 3.5970 3.9480 -2.0177
23 7 2.3426 4.4927 -1.4380
24 6 1.4074 3.3498 -1.3547
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3634 0.5138 0.8900
27 1 -0.3634 0.5138 -0.8899
28 1 1.8934 -0.5139 0.8900
29 1 1.8934 -0.5138 -0.8900
30 1 1.6946 0.4668 2.3344
31 1 3.3096 2.3662 3.6612
32 1 1.6314 2.9595 3.6607
33 1 2.4017 2.4717 6.1966
34 1 1.7637 0.6692 10.2847
35 1 4.1509 2.6577 -0.3407
36 1 4.3289 1.8879 -1.9517
37 1 3.5068 3.8414 -3.0987
38 1 4.4455 4.5837 -1.7646
39 1 1.9653 5.2270 -2.0180
40 1 0.7800 3.3176 -2.2454
41 1 0.7843 3.4403 -0.4650
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001331382086.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:03:33
Heat of formation + Delta-G solvation = -41.825769 kcal
Electronic energy + Delta-G solvation = -23088.598376 eV
Core-core repulsion = 19618.265643 eV
Total energy + Delta-G solvation = -3470.332733 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 284.164 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-40.53187 -38.64008 -37.61623 -35.58125 -34.39996 -33.59596 -31.76789 -30.94980
-29.47880 -28.64404 -27.02767 -24.34448 -23.27318 -21.74501 -21.49181 -19.68514
-19.40974 -18.54801 -17.64835 -16.65183 -16.53706 -15.63001 -15.49962 -14.99508
-14.81688 -14.39354 -14.15890 -13.96643 -13.86125 -13.18473 -13.06664 -12.99618
-12.56778 -12.44463 -12.33744 -12.14815 -12.07375 -11.79920 -11.68111 -11.47711
-11.27606 -11.20177 -10.97969 -10.61356 -10.03820 -9.66716 -9.62759 -8.82886
-8.72516 -8.50596 -8.42752 -8.27226 -6.38349 -3.90672 2.69595 3.02581
3.07312 3.14998 3.42996 3.62220 4.00749 4.06616 4.16969 4.59610
4.61612 4.68954 4.78535 4.94001 5.09666 5.13863 5.17331 5.21131
5.26113 5.41705 5.57507 5.68357 5.72970 5.74131 5.76580 5.87043
5.90649 5.93210 6.09470 6.15293 6.57888 6.75817 6.80405 7.06168
7.27723 7.48060 8.03448 8.21477 8.47755 8.84291 8.88171 9.33032
9.67276 10.73918
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.026068 B = 0.003752 C = 0.003406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1073.837165 B = 7461.480358 C = 8219.002050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.104 3.896
3 N -0.627 5.627
4 C 0.700 3.300
5 O -0.565 6.565
6 N -0.728 5.728
7 C 0.127 3.873
8 C 0.439 3.561
9 O -0.580 6.580
10 N -0.577 5.577
11 C -0.309 4.309
12 H 0.121 0.879
13 C 0.045 3.955
14 N -0.876 5.876
15 Si 0.879 3.121
16 H -0.269 1.269
17 H -0.275 1.275
18 H -0.266 1.266
19 C 0.160 3.840
20 H 0.090 0.910
21 C -0.135 4.135
22 C 0.046 3.954
23 N -0.652 5.652
24 C 0.041 3.959
25 H 0.067 0.933
26 H 0.062 0.938
27 H 0.055 0.945
28 H 0.080 0.920
29 H 0.077 0.923
30 H 0.405 0.595
31 H 0.081 0.919
32 H 0.082 0.918
33 H 0.374 0.626
34 H 0.275 0.725
35 H 0.095 0.905
36 H 0.066 0.934
37 H 0.033 0.967
38 H 0.079 0.921
39 H 0.330 0.670
40 H 0.035 0.965
41 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.315 4.433 -22.746 23.211
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C -0.019 4.019
3 N -0.365 5.365
4 C 0.401 3.599
5 O -0.442 6.442
6 N -0.388 5.388
7 C -0.002 4.002
8 C 0.226 3.774
9 O -0.465 6.465
10 N -0.215 5.215
11 C -0.438 4.438
12 H 0.139 0.861
13 C -0.159 4.159
14 N -0.515 5.515
15 Si 0.705 3.295
16 H -0.194 1.194
17 H -0.200 1.200
18 H -0.192 1.192
19 C 0.055 3.945
20 H 0.109 0.891
21 C -0.174 4.174
22 C -0.084 4.084
23 N -0.280 5.280
24 C -0.090 4.090
25 H 0.086 0.914
26 H 0.081 0.919
27 H 0.074 0.926
28 H 0.098 0.902
29 H 0.096 0.904
30 H 0.245 0.755
31 H 0.099 0.901
32 H 0.100 0.900
33 H 0.208 0.792
34 H 0.086 0.914
35 H 0.113 0.887
36 H 0.084 0.916
37 H 0.052 0.948
38 H 0.098 0.902
39 H 0.145 0.855
40 H 0.054 0.946
41 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 1.540 4.481 -21.893 22.400
hybrid contribution -0.037 0.647 -0.435 0.780
sum 1.503 5.128 -22.327 22.958
Atomic orbital electron populations
1.22233 0.95813 1.02427 1.02637 1.21548 0.94638 0.82591 1.03172
1.47203 1.70867 1.14048 1.04372 1.15842 0.79273 0.84645 0.80107
1.91008 1.51530 1.15658 1.85972 1.44996 1.71743 1.18477 1.03618
1.20764 1.02084 0.94950 0.82410 1.19702 0.85249 0.88781 0.83717
1.90522 1.51292 1.20798 1.83845 1.42120 1.59179 1.14728 1.05478
1.19437 1.42279 0.98663 0.83407 0.86126 1.25059 0.97313 0.98315
0.95223 1.69620 1.46857 1.35733 0.99279 0.86673 0.79632 0.84194
0.79025 1.19395 1.20021 1.19177 1.21659 0.95124 0.93123 0.84601
0.89149 1.22911 0.95932 0.95454 1.03067 1.22906 0.94199 0.95900
0.95384 1.62957 1.03934 1.09166 1.51976 1.22934 0.94968 0.90327
1.00765 0.91398 0.91938 0.92562 0.90210 0.90434 0.75532 0.90055
0.89993 0.79230 0.91428 0.88694 0.91555 0.94827 0.90222 0.85507
0.94641 0.89874
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.62 10.24 37.16 0.38 -1.24 16
2 C 0.10 1.02 5.87 -4.04 -0.02 1.00 16
3 N -0.63 -7.64 2.45 -170.25 -0.42 -8.06 16
4 C 0.70 11.14 7.15 -86.91 -0.62 10.52 16
5 O -0.57 -10.46 13.18 5.29 0.07 -10.39 16
6 N -0.73 -12.14 5.39 -66.42 -0.36 -12.50 16
7 C 0.13 2.28 6.15 -5.19 -0.03 2.25 16
8 C 0.44 9.80 7.85 -10.98 -0.09 9.72 16
9 O -0.58 -14.72 15.24 5.55 0.08 -14.63 16
10 N -0.58 -13.59 5.09 -10.96 -0.06 -13.65 16
11 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16
12 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16
13 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16
14 N -0.88 -25.16 13.96 55.50 0.77 -24.38 16
15 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16
16 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16
17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16
18 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16
19 C 0.16 1.69 3.46 -66.58 -0.23 1.46 16
20 H 0.09 0.71 7.84 -51.93 -0.41 0.31 16
21 C -0.13 -1.47 6.25 -24.87 -0.16 -1.63 16
22 C 0.05 0.46 7.55 -1.89 -0.01 0.44 16
23 N -0.65 -7.58 7.14 -110.08 -0.79 -8.36 16
24 C 0.04 0.45 6.35 -2.76 -0.02 0.44 16
25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
28 H 0.08 0.87 6.36 -51.93 -0.33 0.54 16
29 H 0.08 0.58 7.94 -51.93 -0.41 0.16 16
30 H 0.41 6.72 5.17 -40.82 -0.21 6.51 16
31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16
32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16
33 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16
34 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16
35 H 0.09 1.37 6.16 -51.93 -0.32 1.05 16
36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16
38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
39 H 0.33 3.09 8.92 -39.29 -0.35 2.74 16
40 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16
41 H 0.08 1.17 7.15 -51.93 -0.37 0.80 16
LS Contribution 331.73 15.07 5.00 5.00
Total: -1.00 -32.89 331.73 -7.45 -40.35
By element:
Atomic # 1 Polarization: 22.80 SS G_CDS: -6.00 Total: 16.80 kcal
Atomic # 6 Polarization: 16.37 SS G_CDS: -1.05 Total: 15.32 kcal
Atomic # 7 Polarization: -66.11 SS G_CDS: -0.84 Total: -66.95 kcal
Atomic # 8 Polarization: -25.18 SS G_CDS: 0.15 Total: -25.03 kcal
Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal
Total LS contribution 5.00 Total: 5.00 kcal
Total: -32.89 -7.45 -40.35 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001331382086.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.481 kcal
(2) G-P(sol) polarization free energy of solvation -32.894 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.375 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.826 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds