Wall clock time and date at job start Tue Mar 31 2020 03:03:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46499 * 109.46840 * 2 1
4 4 C 1.34781 * 119.99786 * 90.00416 * 3 2 1
5 5 O 1.21590 * 119.99995 * 179.97438 * 4 3 2
6 6 N 1.34777 * 120.00169 * 359.97438 * 4 3 2
7 7 C 1.46497 * 120.00027 * 180.02562 * 6 4 3
8 8 C 1.50702 * 109.46826 * 180.02562 * 7 6 4
9 9 O 1.21286 * 120.00339 * 359.97438 * 8 7 6
10 10 N 1.34781 * 119.99628 * 180.02562 * 8 7 6
11 11 C 1.37096 * 119.99656 * 179.97438 * 10 8 7
12 12 H 1.08004 * 120.00175 * 0.02562 * 11 10 8
13 13 C 1.38953 * 119.99832 * 179.97438 * 11 10 8
14 14 N 1.31411 * 119.99912 * 180.02562 * 13 11 10
15 15 Si 1.86796 * 120.00107 * 0.02562 * 13 11 10
16 16 H 1.48500 * 109.47239 * 89.99365 * 15 13 11
17 17 H 1.48498 * 109.47319 * 209.99701 * 15 13 11
18 18 H 1.48507 * 109.47217 * 329.99626 * 15 13 11
19 19 C 1.46504 * 120.00381 * 269.99975 * 3 2 1
20 20 H 1.08999 * 110.26903 * 359.36568 * 19 3 2
21 21 C 1.54594 * 110.30902 * 237.17060 * 19 3 2
22 22 C 1.54940 * 102.92106 * 219.12252 * 21 19 3
23 23 N 1.48539 * 103.22252 * 37.41921 * 22 21 19
24 24 C 1.47904 * 105.81955 * 320.78937 * 23 22 21
25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3
26 26 H 1.09001 * 109.47194 * 299.99493 * 1 2 3
27 27 H 1.08992 * 109.47399 * 59.99666 * 1 2 3
28 28 H 1.09002 * 109.47398 * 120.00326 * 2 1 3
29 29 H 1.09001 * 109.47194 * 240.00507 * 2 1 3
30 30 H 0.96998 * 119.99511 * 0.02562 * 6 4 3
31 31 H 1.09002 * 109.46833 * 299.99844 * 7 6 4
32 32 H 1.08992 * 109.47528 * 60.00137 * 7 6 4
33 33 H 0.96997 * 120.00360 * 359.97438 * 10 8 7
34 34 H 0.97001 * 119.99770 * 180.02562 * 14 13 11
35 35 H 1.08997 * 110.72587 * 337.48723 * 21 19 3
36 36 H 1.09002 * 110.71863 * 100.76946 * 21 19 3
37 37 H 1.08995 * 110.66833 * 278.98271 * 22 21 19
38 38 H 1.08999 * 110.80723 * 155.91788 * 22 21 19
39 39 H 1.00900 * 110.99815 * 200.27628 * 23 22 21
40 40 H 1.09001 * 109.91702 * 265.97539 * 24 23 22
41 41 H 1.09000 * 110.07713 * 144.78187 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2429 2.0165 1.1673
5 8 2.6486 3.1628 1.1673
6 7 2.0179 1.3813 2.3345
7 6 2.2616 2.0721 3.6032
8 6 1.9354 1.1486 4.7486
9 8 1.5380 0.0243 4.5269
10 7 2.0843 1.5725 6.0193
11 6 1.7870 0.7326 7.0613
12 1 1.4339 -0.2688 6.8639
13 6 1.9410 1.1694 8.3714
14 7 1.6566 0.3641 9.3701
15 14 2.5524 2.9011 8.7128
16 1 1.3942 3.8262 8.8029
17 1 3.3005 2.9181 9.9954
18 1 3.4485 3.3359 7.6113
19 6 2.2624 2.0719 -1.2687
20 1 2.0409 1.4114 -2.1070
21 6 3.7273 2.5606 -1.3403
22 6 3.5970 3.9480 -2.0177
23 7 2.3426 4.4927 -1.4380
24 6 1.4074 3.3498 -1.3547
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3634 0.5138 0.8900
27 1 -0.3634 0.5138 -0.8899
28 1 1.8934 -0.5139 0.8900
29 1 1.8934 -0.5138 -0.8900
30 1 1.6946 0.4668 2.3344
31 1 3.3096 2.3662 3.6612
32 1 1.6314 2.9595 3.6607
33 1 2.4017 2.4717 6.1966
34 1 1.7637 0.6692 10.2847
35 1 4.1509 2.6577 -0.3407
36 1 4.3289 1.8879 -1.9517
37 1 3.5068 3.8414 -3.0987
38 1 4.4455 4.5837 -1.7646
39 1 1.9653 5.2270 -2.0180
40 1 0.7800 3.3176 -2.2454
41 1 0.7843 3.4403 -0.4650
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001331382086.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:03:32
Heat of formation + Delta-G solvation = -69.039894 kcal
Electronic energy + Delta-G solvation = -23089.778469 eV
Core-core repulsion = 19618.265643 eV
Total energy + Delta-G solvation = -3471.512826 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 284.164 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.65242 -40.35917 -38.70889 -36.58918 -36.24102 -35.11170 -33.82575 -31.79494
-30.39813 -29.79842 -28.33079 -26.15110 -24.22690 -22.66217 -22.34627 -21.43649
-20.85095 -20.32095 -18.75292 -17.73750 -17.58606 -17.24676 -16.84687 -16.64452
-16.10606 -15.81841 -15.45143 -15.10010 -14.85842 -14.77404 -14.29633 -14.14830
-13.97170 -13.93510 -13.53187 -13.31598 -13.03846 -12.93555 -12.80047 -12.50804
-12.44802 -12.29029 -12.12487 -12.00259 -11.77582 -11.58197 -10.84803 -10.64419
-10.32901 -10.11516 -9.50682 -9.23932 -8.45705 -6.07346 1.31196 1.34004
1.43450 1.60271 1.79000 2.20305 2.23582 2.70376 3.06420 3.10775
3.40545 3.79309 3.89686 3.96464 4.01093 4.20125 4.33308 4.38388
4.40685 4.43952 4.46398 4.51828 4.67433 4.78049 4.93004 4.96210
5.00326 5.06363 5.25898 5.32184 5.37955 5.51107 5.69886 5.88195
5.94919 6.01833 6.49171 6.57436 6.77968 6.99984 7.28743 7.65781
7.78182 8.70771
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.026068 B = 0.003752 C = 0.003406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1073.837165 B = 7461.480358 C = 8219.002050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.101 3.899
3 N -0.619 5.619
4 C 0.698 3.302
5 O -0.594 6.594
6 N -0.734 5.734
7 C 0.140 3.860
8 C 0.446 3.554
9 O -0.613 6.613
10 N -0.578 5.578
11 C -0.331 4.331
12 H 0.064 0.936
13 C -0.007 4.007
14 N -0.926 5.926
15 Si 0.958 3.042
16 H -0.257 1.257
17 H -0.272 1.272
18 H -0.235 1.235
19 C 0.155 3.845
20 H 0.129 0.871
21 C -0.135 4.135
22 C 0.050 3.950
23 N -0.680 5.680
24 C 0.043 3.957
25 H 0.081 0.919
26 H 0.032 0.968
27 H 0.069 0.931
28 H 0.065 0.935
29 H 0.113 0.887
30 H 0.405 0.595
31 H 0.097 0.903
32 H 0.096 0.904
33 H 0.391 0.609
34 H 0.281 0.719
35 H 0.055 0.945
36 H 0.090 0.910
37 H 0.063 0.937
38 H 0.071 0.929
39 H 0.340 0.660
40 H 0.063 0.937
41 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.063 6.013 -25.284 26.071
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C -0.022 4.022
3 N -0.356 5.356
4 C 0.399 3.601
5 O -0.472 6.472
6 N -0.394 5.394
7 C 0.012 3.988
8 C 0.234 3.766
9 O -0.499 6.499
10 N -0.218 5.218
11 C -0.460 4.460
12 H 0.082 0.918
13 C -0.207 4.207
14 N -0.565 5.565
15 Si 0.778 3.222
16 H -0.181 1.181
17 H -0.197 1.197
18 H -0.158 1.158
19 C 0.051 3.949
20 H 0.147 0.853
21 C -0.174 4.174
22 C -0.080 4.080
23 N -0.310 5.310
24 C -0.087 4.087
25 H 0.100 0.900
26 H 0.051 0.949
27 H 0.088 0.912
28 H 0.084 0.916
29 H 0.131 0.869
30 H 0.244 0.756
31 H 0.115 0.885
32 H 0.114 0.886
33 H 0.227 0.773
34 H 0.091 0.909
35 H 0.074 0.926
36 H 0.109 0.891
37 H 0.081 0.919
38 H 0.089 0.911
39 H 0.156 0.844
40 H 0.081 0.919
41 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 2.284 6.051 -24.487 25.327
hybrid contribution -0.318 0.044 0.263 0.415
sum 1.966 6.095 -24.224 25.056
Atomic orbital electron populations
1.22179 0.95445 1.03094 1.01802 1.21737 0.94862 0.81343 1.04217
1.47274 1.69760 1.14783 1.03787 1.15981 0.79048 0.84383 0.80689
1.90985 1.52842 1.16905 1.86472 1.45000 1.72273 1.18482 1.03621
1.20610 1.03154 0.93947 0.81123 1.20504 0.83037 0.88735 0.84342
1.90508 1.52143 1.22722 1.84555 1.41926 1.59911 1.15013 1.04959
1.19037 1.44037 0.97511 0.85401 0.91776 1.26037 0.96730 1.03757
0.94144 1.69776 1.48051 1.38642 1.00068 0.85461 0.79798 0.77217
0.79765 1.18106 1.19690 1.15796 1.21983 0.94762 0.93566 0.84607
0.85306 1.22872 0.96312 0.96755 1.01411 1.22902 0.93188 0.95022
0.96850 1.62859 1.04795 1.10012 1.53309 1.22849 0.94947 0.90569
1.00337 0.89998 0.94873 0.91216 0.91639 0.86893 0.75571 0.88527
0.88569 0.77298 0.90908 0.92624 0.89112 0.91891 0.91061 0.84360
0.91904 0.93388
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.87 10.24 71.98 0.74 -2.13 16
2 C 0.10 1.78 5.87 86.38 0.51 2.28 16
3 N -0.62 -14.08 2.45 -810.80 -1.99 -16.06 16
4 C 0.70 21.80 7.15 179.05 1.28 23.08 16
5 O -0.59 -21.76 13.18 -4.00 -0.05 -21.81 16
6 N -0.73 -24.30 5.39 -482.30 -2.60 -26.91 16
7 C 0.14 4.94 6.15 85.63 0.53 5.47 16
8 C 0.45 20.10 7.85 87.66 0.69 20.78 16
9 O -0.61 -32.16 15.24 -3.05 -0.05 -32.21 16
10 N -0.58 -27.27 5.09 -306.98 -1.56 -28.83 16
11 C -0.33 -19.03 10.16 84.04 0.85 -18.18 16
12 H 0.06 4.33 7.39 -2.91 -0.02 4.31 16
13 C -0.01 -0.37 5.50 84.93 0.47 0.10 16
14 N -0.93 -54.78 13.96 21.66 0.30 -54.48 16
15 Si 0.96 38.84 27.74 68.60 1.90 40.74 16
16 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16
17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16
18 H -0.23 -8.24 6.52 99.48 0.65 -7.59 16
19 C 0.15 2.82 3.46 45.87 0.16 2.98 16
20 H 0.13 1.40 7.84 -2.39 -0.02 1.38 16
21 C -0.13 -2.65 6.25 31.80 0.20 -2.45 16
22 C 0.05 0.88 7.55 86.65 0.65 1.53 16
23 N -0.68 -14.72 7.14 -502.19 -3.59 -18.31 16
24 C 0.04 0.88 6.35 86.44 0.55 1.43 16
25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
26 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16
27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
28 H 0.07 1.37 6.36 -2.39 -0.02 1.35 16
29 H 0.11 1.23 7.94 -2.39 -0.02 1.21 16
30 H 0.41 13.56 5.17 -92.71 -0.48 13.08 16
31 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16
32 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16
33 H 0.39 15.67 5.76 -92.71 -0.53 15.14 16
34 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16
35 H 0.05 1.57 6.16 -2.39 -0.01 1.55 16
36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16
37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
39 H 0.34 5.79 8.92 -89.69 -0.80 4.99 16
40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
41 H 0.05 1.32 7.15 -2.39 -0.02 1.30 16
Total: -1.00 -75.97 331.73 -1.81 -77.78
By element:
Atomic # 1 Polarization: 45.97 SS G_CDS: -0.80 Total: 45.17 kcal
Atomic # 6 Polarization: 28.29 SS G_CDS: 6.62 Total: 34.91 kcal
Atomic # 7 Polarization: -135.15 SS G_CDS: -9.43 Total: -144.58 kcal
Atomic # 8 Polarization: -53.92 SS G_CDS: -0.10 Total: -54.02 kcal
Atomic # 14 Polarization: 38.84 SS G_CDS: 1.90 Total: 40.74 kcal
Total: -75.97 -1.81 -77.78 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001331382086.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.743 kcal
(2) G-P(sol) polarization free energy of solvation -75.971 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.228 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.811 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.783 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.040 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds