Wall clock time and date at job start Tue Mar 31 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29949 * 126.28516 * 2 1 4 4 O 1.21303 * 110.24828 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81167 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55166 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.47215 * 270.02355 * 6 5 4 8 8 C 1.46898 * 111.00241 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47070 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47081 * 305.00007 * 9 8 7 11 11 O 1.42891 * 109.47193 * 65.00454 * 9 8 7 12 12 C 1.53000 * 109.46673 * 185.00453 * 9 8 7 13 13 N 1.46898 * 109.46989 * 180.02562 * 12 9 8 14 14 C 1.46905 * 110.99746 * 293.94919 * 13 12 9 15 15 C 1.46897 * 111.00407 * 169.99732 * 13 12 9 16 16 C 1.50694 * 109.47644 * 189.99650 * 15 13 12 17 17 H 1.08005 * 119.99974 * 0.02562 * 16 15 13 18 18 C 1.37880 * 120.00242 * 180.02562 * 16 15 13 19 19 N 1.31507 * 120.00047 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99727 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47529 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47055 * 120.00194 * 20 18 16 23 23 H 1.48502 * 109.46921 * 239.99624 * 20 18 16 24 24 N 1.31134 * 106.89726 * 359.76539 * 5 4 3 25 25 H 1.09001 * 109.46953 * 90.02334 * 1 2 3 26 26 H 1.09000 * 109.47318 * 210.01931 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.02562 * 1 2 3 28 28 H 1.08997 * 109.46651 * 30.02836 * 6 5 4 29 29 H 1.09002 * 109.46970 * 150.02239 * 6 5 4 30 30 H 1.00901 * 110.99748 * 303.95914 * 7 6 5 31 31 H 1.08998 * 109.47081 * 300.00417 * 8 7 6 32 32 H 1.08999 * 109.46874 * 60.00168 * 8 7 6 33 33 H 0.96697 * 114.00375 * 59.99685 * 11 9 8 34 34 H 1.09005 * 109.47299 * 299.99439 * 12 9 8 35 35 H 1.08997 * 109.47473 * 60.00293 * 12 9 8 36 36 H 1.08998 * 109.46843 * 60.00195 * 14 13 12 37 37 H 1.09005 * 109.46866 * 180.02562 * 14 13 12 38 38 H 1.08999 * 109.47291 * 300.00173 * 14 13 12 39 39 H 1.08999 * 109.47265 * 309.99829 * 15 13 12 40 40 H 1.09003 * 109.47140 * 69.99931 * 15 13 12 41 41 H 0.97004 * 120.00248 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 7 5.2091 -1.7014 -1.3847 8 6 6.4441 -2.4958 -1.4240 9 6 6.8411 -2.7498 -2.8796 10 1 6.0084 -3.2145 -3.4075 11 8 7.1698 -1.5088 -3.5071 12 6 8.0549 -3.6802 -2.9222 13 7 8.4364 -3.9235 -4.3197 14 6 7.3928 -4.6780 -5.0266 15 6 9.7306 -4.6139 -4.3996 16 6 10.2050 -4.6282 -5.8299 17 1 9.6053 -4.1698 -6.6024 18 6 11.4047 -5.2264 -6.1524 19 7 12.1352 -5.7841 -5.2118 20 14 11.9930 -5.2433 -7.9253 21 1 10.9966 -4.5543 -8.7842 22 1 13.2985 -4.5419 -8.0204 23 1 12.1514 -6.6479 -8.3808 24 7 2.3030 -1.0840 0.0048 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3634 -0.8898 0.5141 27 1 -0.3633 0.8902 0.5134 28 1 5.5841 -0.8856 0.5146 29 1 4.6205 -2.3822 0.5136 30 1 4.4704 -2.1548 -1.9014 31 1 7.2424 -1.9515 -0.9196 32 1 6.2794 -3.4484 -0.9204 33 1 7.9043 -1.0390 -3.0888 34 1 8.8877 -3.2155 -2.3943 35 1 7.8041 -4.6268 -2.4436 36 1 6.4619 -4.1113 -5.0121 37 1 7.7011 -4.8448 -6.0588 38 1 7.2414 -5.6382 -4.5334 39 1 10.4598 -4.0918 -3.7802 40 1 9.6186 -5.6381 -4.0438 41 1 12.9790 -6.2053 -5.4387 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345606000.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:39 Heat of formation + Delta-G solvation = -2.920895 kcal Electronic energy + Delta-G solvation = -21757.724594 eV Core-core repulsion = 18289.078903 eV Total energy + Delta-G solvation = -3468.645691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.64277 -39.57518 -37.70561 -37.09619 -36.36944 -34.59355 -33.90607 -31.28160 -30.14648 -29.22440 -28.24877 -26.68137 -24.93218 -24.31401 -22.76858 -22.41769 -21.69368 -19.21590 -18.61852 -18.54498 -17.56504 -17.07260 -16.76301 -16.29671 -16.00767 -15.86004 -15.68695 -15.15824 -14.93744 -14.80796 -14.48209 -14.13936 -13.83728 -13.64329 -13.52251 -13.24911 -13.10749 -12.91457 -12.68876 -12.57078 -12.50777 -12.43998 -12.34796 -12.14755 -11.98408 -11.58678 -11.36017 -11.05190 -10.63724 -10.61377 -9.52719 -8.92258 -8.20004 -6.29194 0.04718 1.11999 1.41107 1.42170 1.55798 1.77063 2.40983 2.59733 2.96984 3.07141 3.12591 3.45131 3.78061 3.88546 3.96779 4.14183 4.28577 4.35442 4.36450 4.49278 4.53014 4.55815 4.57863 4.70719 4.74291 4.75569 4.82700 4.87156 5.07677 5.09353 5.17809 5.20611 5.34357 5.66121 5.75831 6.07355 6.15265 6.34884 6.67682 6.87463 7.10107 7.10890 7.40443 8.90909 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.046916 B = 0.002343 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.674155 B =11948.458447 C =12057.353680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.160 3.840 3 N -0.411 5.411 4 O 0.073 5.927 5 C 0.198 3.802 6 C 0.152 3.848 7 N -0.685 5.685 8 C 0.041 3.959 9 C 0.127 3.873 10 H 0.088 0.912 11 O -0.557 6.557 12 C 0.023 3.977 13 N -0.541 5.541 14 C 0.040 3.960 15 C 0.208 3.792 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.278 1.278 24 N -0.500 5.500 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.099 0.901 30 H 0.347 0.653 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.380 0.620 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.012 0.988 39 H 0.006 0.994 40 H -0.038 1.038 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.503 8.483 13.970 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 N -0.122 5.122 4 O 0.017 5.983 5 C -0.023 4.023 6 C 0.022 3.978 7 N -0.319 5.319 8 C -0.088 4.088 9 C 0.066 3.934 10 H 0.106 0.894 11 O -0.362 6.362 12 C -0.106 4.106 13 N -0.265 5.265 14 C -0.108 4.108 15 C 0.081 3.919 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.197 4.197 19 N -0.574 5.574 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.204 1.204 24 N -0.236 5.236 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.150 0.850 29 H 0.116 0.884 30 H 0.165 0.835 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.228 0.772 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.030 0.970 39 H 0.025 0.975 40 H -0.021 1.021 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.085 9.794 13.327 26.018 hybrid contribution 0.883 -1.823 0.175 2.033 sum -19.202 7.971 13.502 24.790 Atomic orbital electron populations 1.20347 0.80478 1.05816 1.05448 1.26634 1.02159 0.83087 0.99344 1.74656 0.89845 1.24944 1.22797 1.85276 1.22123 1.25412 1.65445 1.29155 0.97171 0.82002 0.94006 1.20578 0.87691 0.97321 0.92173 1.60292 1.07272 1.52989 1.11306 1.22598 0.92404 0.97106 0.96713 1.21745 0.94975 0.84310 0.92337 0.89432 1.86565 1.56250 1.34080 1.59335 1.22844 0.98961 0.98914 0.89873 1.61909 1.03086 1.48533 1.13011 1.22215 0.94661 0.94856 0.99057 1.19393 0.86318 0.89883 0.96280 1.21506 1.04926 1.35304 0.94268 0.92258 1.25893 0.96784 0.94992 1.02073 1.70074 1.14059 1.38738 1.34563 0.85355 0.78209 0.77828 0.79345 1.19008 1.20330 1.20385 1.71926 1.00334 1.30022 1.21295 0.88157 0.87770 0.88344 0.84964 0.88376 0.83472 0.88367 0.92085 0.77191 0.90875 0.94654 0.90656 0.92938 0.96951 0.97540 1.02072 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.51 71.24 0.75 0.05 16 2 C 0.16 3.21 8.22 138.47 1.14 4.35 16 3 N -0.41 -9.61 12.16 -60.32 -0.73 -10.34 16 4 O 0.07 1.61 11.31 74.86 0.85 2.45 16 5 C 0.20 3.64 8.03 88.38 0.71 4.35 16 6 C 0.15 1.85 6.31 85.56 0.54 2.39 16 7 N -0.69 -11.07 6.44 -517.94 -3.33 -14.40 16 8 C 0.04 0.65 5.32 86.30 0.46 1.11 16 9 C 0.13 3.09 3.02 30.59 0.09 3.18 16 10 H 0.09 2.22 6.55 -2.39 -0.02 2.21 16 11 O -0.56 -16.00 13.15 -148.98 -1.96 -17.96 16 12 C 0.02 0.73 4.62 86.30 0.40 1.13 16 13 N -0.54 -22.86 4.62 -927.05 -4.28 -27.14 16 14 C 0.04 1.55 9.14 127.69 1.17 2.72 16 15 C 0.21 10.94 4.72 85.56 0.40 11.35 16 16 C -0.52 -29.77 8.46 25.60 0.22 -29.56 16 17 H 0.06 3.38 7.12 -2.91 -0.02 3.36 16 18 C 0.00 0.02 5.46 84.66 0.46 0.49 16 19 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 20 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 N -0.50 -10.30 11.55 -303.19 -3.50 -13.80 16 25 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.35 5.99 8.72 -89.69 -0.78 5.21 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.38 8.91 9.05 -74.06 -0.67 8.24 16 34 H 0.07 2.26 7.93 -2.38 -0.02 2.24 16 35 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 36 H 0.07 2.45 6.47 -2.39 -0.02 2.43 16 37 H 0.05 2.23 6.76 -2.38 -0.02 2.22 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.01 0.37 7.93 -2.39 -0.02 0.35 16 40 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 41 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -72.42 347.39 -4.72 -77.14 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -0.40 Total: 11.52 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 6.34 Total: 1.55 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -11.57 Total: -121.31 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -1.11 Total: -15.51 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.42 -4.72 -77.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345606000.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.224 kcal (2) G-P(sol) polarization free energy of solvation -72.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds