Wall clock time and date at job start Tue Mar 31 2020 03:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46867 * 2 1 4 4 C 1.53006 * 109.47071 * 119.99553 * 2 1 3 5 5 O 1.42893 * 109.47256 * 175.00228 * 4 2 1 6 6 C 1.42895 * 114.00279 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47269 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.89351 * 31.12055 * 11 10 8 13 13 C 1.55167 * 111.00393 * 155.00068 * 11 10 8 14 14 C 1.54325 * 102.94172 * 153.57055 * 13 11 10 15 15 N 1.47019 * 107.27485 * 337.81007 * 14 13 11 16 16 C 1.36929 * 125.64784 * 178.98606 * 15 14 13 17 17 H 1.08006 * 120.00056 * 179.97438 * 16 15 14 18 18 C 1.38814 * 120.00517 * 359.97082 * 16 15 14 19 19 N 1.31616 * 119.99336 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00357 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47420 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46803 * 120.00138 * 20 18 16 23 23 H 1.48500 * 109.47152 * 240.00275 * 20 18 16 24 24 C 1.47423 * 108.70154 * 358.93746 * 15 14 13 25 25 H 1.08994 * 109.47325 * 300.00369 * 1 2 3 26 26 H 1.09004 * 109.46817 * 60.00432 * 1 2 3 27 27 H 1.09003 * 109.47041 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47325 * 239.99631 * 2 1 3 29 29 H 1.09008 * 109.47036 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47049 * 299.99426 * 3 2 1 31 31 H 1.08998 * 109.47904 * 59.99877 * 3 2 1 32 32 H 1.09000 * 109.46582 * 54.99874 * 4 2 1 33 33 H 1.09000 * 109.46667 * 295.00324 * 4 2 1 34 34 H 1.09001 * 109.47102 * 60.00096 * 6 5 4 35 35 H 1.09004 * 109.47055 * 300.00038 * 6 5 4 36 36 H 1.09001 * 109.46832 * 60.00112 * 7 6 5 37 37 H 1.09000 * 109.47611 * 300.00409 * 7 6 5 38 38 H 0.96994 * 119.99756 * 0.02562 * 10 8 7 39 39 H 1.08999 * 110.71868 * 271.93792 * 13 11 10 40 40 H 1.08996 * 110.71528 * 35.21159 * 13 11 10 41 41 H 1.08998 * 109.87759 * 97.22924 * 14 13 11 42 42 H 1.09002 * 109.88213 * 218.23124 * 14 13 11 43 43 H 0.96999 * 119.99935 * 179.97438 * 19 18 16 44 44 H 1.09007 * 110.36915 * 265.29076 * 24 15 14 45 45 H 1.09007 * 110.36905 * 142.96726 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1922 6 6 4.0449 -1.4854 2.3177 7 6 5.5648 -1.5380 2.1500 8 6 6.1773 -2.2353 3.3374 9 8 5.4680 -2.6498 4.2295 10 7 7.5133 -2.3983 3.4077 11 6 8.1086 -3.0767 4.5617 12 1 7.4301 -3.8296 4.9626 13 6 9.4791 -3.7035 4.1922 14 6 10.2212 -3.7340 5.5450 15 7 9.5919 -2.7262 6.4110 16 6 9.9460 -2.4530 7.7051 17 1 9.4197 -1.6898 8.2594 18 6 10.9812 -3.1568 8.3050 19 7 11.6227 -4.0865 7.6295 20 14 11.4646 -2.7835 10.0702 21 1 10.5960 -1.7038 10.6037 22 1 11.2992 -4.0055 10.8977 23 1 12.8828 -2.3450 10.1129 24 6 8.5173 -2.0578 5.6547 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1581 2.1370 34 1 3.6519 -2.4999 2.3854 35 1 3.7981 -0.9387 3.2278 36 1 5.9581 -0.5237 2.0821 37 1 5.8113 -2.0849 1.2400 38 1 8.0806 -2.0664 2.6944 39 1 9.3488 -4.7124 3.8009 40 1 10.0093 -3.0763 3.4756 41 1 10.1276 -4.7215 5.9968 42 1 11.2737 -3.4930 5.3960 43 1 12.3464 -4.5782 8.0484 44 1 8.8887 -1.1403 5.1983 45 1 7.6714 -1.8423 6.3076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481685429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:18 Heat of formation + Delta-G solvation = -77.965914 kcal Electronic energy + Delta-G solvation = -22127.982014 eV Core-core repulsion = 18759.622470 eV Total energy + Delta-G solvation = -3368.359544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.76860 -38.47141 -37.24465 -35.41299 -34.02593 -32.13885 -31.31159 -29.14436 -27.48694 -27.23769 -26.22448 -24.61428 -23.40290 -20.76970 -20.41291 -20.26898 -19.82426 -17.54638 -16.92547 -16.63482 -16.12887 -15.69678 -15.48345 -14.95306 -14.61896 -14.45858 -14.12592 -13.68018 -13.42988 -13.13213 -12.85980 -12.76328 -12.49251 -12.42435 -12.18676 -11.82216 -11.67116 -11.57524 -11.32413 -11.11405 -11.01071 -10.91047 -10.88793 -10.76942 -10.36801 -10.07172 -9.90923 -9.78421 -9.75678 -9.63197 -8.75557 -8.59829 -6.84119 -5.71526 -3.05043 2.75261 3.00799 3.40960 3.46603 3.49127 3.74898 4.50871 4.51953 4.56284 4.70532 4.77943 4.89422 5.08829 5.17222 5.18031 5.27344 5.29050 5.36645 5.41832 5.45573 5.52817 5.60070 5.61538 5.64324 5.69223 5.73576 5.74408 5.80349 5.94738 6.02203 6.18753 6.32219 6.41616 6.58590 6.68779 6.96492 6.98810 7.53860 7.57377 7.68512 7.82004 8.24367 8.37662 9.21839 9.81668 10.46586 11.40488 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.040027 B = 0.002383 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.364775 B =11748.336550 C =12096.956488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.067 3.933 5 O -0.391 6.391 6 C 0.079 3.921 7 C -0.139 4.139 8 C 0.514 3.486 9 O -0.543 6.543 10 N -0.715 5.715 11 C 0.126 3.874 12 H 0.097 0.903 13 C -0.149 4.149 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.226 4.226 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.129 3.871 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.399 0.601 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.252 0.748 44 H 0.020 0.980 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.552 6.670 -17.737 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.009 4.009 5 O -0.310 6.310 6 C 0.002 3.998 7 C -0.179 4.179 8 C 0.300 3.700 9 O -0.421 6.421 10 N -0.365 5.365 11 C 0.021 3.979 12 H 0.115 0.885 13 C -0.188 4.188 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.354 4.354 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.002 3.998 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.233 0.767 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.037 0.963 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.794 6.363 -17.068 24.776 hybrid contribution 0.533 0.194 0.792 0.974 sum -16.261 6.556 -16.276 23.923 Atomic orbital electron populations 1.21793 0.94368 1.02017 1.02239 1.21106 0.95436 0.96978 0.97899 1.21792 1.02001 0.95045 1.01372 1.22559 0.81052 0.99263 0.98044 1.87771 1.20108 1.79307 1.43855 1.22106 0.91983 0.97192 0.88555 1.21466 0.95431 1.02968 0.98004 1.20352 0.82615 0.79496 0.87512 1.90725 1.61006 1.50010 1.40327 1.45993 1.06721 1.59654 1.24170 1.22328 0.94450 0.95381 0.85758 0.88540 1.23185 0.94999 0.99839 1.00817 1.21144 0.94951 0.93829 0.84714 1.44397 1.36450 1.41521 1.10726 1.19122 1.13217 1.16384 0.86679 0.90324 1.24816 0.98611 0.98571 0.98598 1.69957 1.25220 1.26256 1.35686 0.86009 0.77983 0.77449 0.84134 1.20481 1.21727 1.21762 1.21826 0.91809 0.93702 0.92505 0.92453 0.92039 0.92495 0.90402 0.91772 0.92876 0.92875 0.93343 0.93250 0.92480 0.92376 0.88120 0.88215 0.76734 0.91612 0.92007 0.93257 0.93554 0.93782 0.96270 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.19 37.16 0.34 -0.50 16 2 C -0.10 -0.70 3.16 -90.62 -0.29 -0.99 16 3 C -0.14 -1.05 9.09 37.16 0.34 -0.71 16 4 C 0.07 0.59 5.32 37.16 0.20 0.79 16 5 O -0.39 -4.16 9.88 -35.23 -0.35 -4.51 16 6 C 0.08 0.87 5.23 37.16 0.19 1.07 16 7 C -0.14 -1.43 6.07 -27.88 -0.17 -1.60 16 8 C 0.51 7.36 7.83 -10.98 -0.09 7.27 16 9 O -0.54 -10.07 15.62 5.56 0.09 -9.99 16 10 N -0.71 -9.95 5.20 -51.72 -0.27 -10.22 16 11 C 0.13 2.28 3.42 -65.78 -0.23 2.05 16 12 H 0.10 1.95 7.54 -51.93 -0.39 1.56 16 13 C -0.15 -2.67 6.60 -24.89 -0.16 -2.84 16 14 C 0.18 4.30 5.37 -3.07 -0.02 4.29 16 15 N -0.60 -15.73 3.39 -170.07 -0.58 -16.31 16 16 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 17 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -27.25 10.31 55.49 0.57 -26.68 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.13 2.79 6.93 -2.53 -0.02 2.78 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.53 7.82 -51.92 -0.41 0.13 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.40 4.27 8.57 -40.82 -0.35 3.92 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 41 H 0.05 1.32 7.38 -51.93 -0.38 0.93 16 42 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 45 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -32.72 364.25 -8.43 -41.15 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -8.22 Total: -0.96 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -0.14 Total: 4.64 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.27 Total: -53.21 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.26 Total: -14.50 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.72 -8.43 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481685429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.815 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds