Wall clock time and date at job start Tue Mar 31 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 120.00370 * 2 1 4 4 H 1.08006 * 119.99701 * 322.02961 * 3 2 1 5 5 C 1.38808 * 120.00136 * 142.02546 * 3 2 1 6 6 N 1.31624 * 120.00073 * 157.07675 * 5 3 2 7 7 Si 1.86796 * 120.00095 * 337.08060 * 5 3 2 8 8 H 1.48499 * 109.47132 * 95.68565 * 7 5 3 9 9 H 1.48500 * 109.47332 * 215.68339 * 7 5 3 10 10 H 1.48501 * 109.47216 * 335.68592 * 7 5 3 11 11 C 1.46504 * 119.99920 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46768 * 90.00090 * 11 2 1 13 13 N 1.46493 * 109.46965 * 180.02562 * 12 11 2 14 14 C 1.46506 * 119.99975 * 269.99981 * 13 12 11 15 15 C 1.34776 * 120.00346 * 89.99866 * 13 12 11 16 16 O 1.21284 * 119.99755 * 359.97438 * 15 13 12 17 17 C 1.50695 * 120.00378 * 179.97438 * 15 13 12 18 18 C 1.52997 * 109.47386 * 180.02562 * 17 15 13 19 19 H 1.08998 * 110.62206 * 51.90925 * 18 17 15 20 20 C 1.54367 * 110.70119 * 288.62480 * 18 17 15 21 21 O 1.45949 * 105.07098 * 223.79362 * 20 18 17 22 22 C 1.34569 * 108.40318 * 32.43709 * 21 20 18 23 23 O 1.20820 * 125.94168 * 146.68686 * 22 21 20 24 24 C 1.51506 * 108.10669 * 326.66887 * 22 21 20 25 25 H 1.08998 * 109.46994 * 265.66719 * 1 2 3 26 26 H 1.09002 * 109.46921 * 25.65836 * 1 2 3 27 27 H 1.08996 * 109.47511 * 145.65949 * 1 2 3 28 28 H 0.97000 * 119.99973 * 179.97438 * 6 5 3 29 29 H 1.08995 * 109.46922 * 330.00282 * 11 2 1 30 30 H 1.08993 * 109.47081 * 209.99902 * 11 2 1 31 31 H 1.09000 * 109.47040 * 59.99962 * 12 11 2 32 32 H 1.09006 * 109.47003 * 300.00109 * 12 11 2 33 33 H 1.09006 * 109.46823 * 270.00237 * 14 13 12 34 34 H 1.09002 * 109.46844 * 29.99767 * 14 13 12 35 35 H 1.08994 * 109.47265 * 150.00397 * 14 13 12 36 36 H 1.09002 * 109.47465 * 300.00551 * 17 15 13 37 37 H 1.09005 * 109.47099 * 59.99761 * 17 15 13 38 38 H 1.09000 * 110.31930 * 342.69061 * 20 18 17 39 39 H 1.08999 * 110.31780 * 104.89121 * 20 18 17 40 40 H 1.09001 * 110.40408 * 261.58722 * 24 22 21 41 41 H 1.09008 * 110.50125 * 139.22062 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7812 2.0222 -0.5755 5 6 3.3175 1.3131 0.7397 6 7 4.2040 2.2311 0.4174 7 14 3.6308 0.1814 2.1924 8 1 4.4692 -0.9639 1.7558 9 1 4.3367 0.9323 3.2616 10 1 2.3358 -0.3238 2.7147 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 7 3.1844 -2.9800 -1.4413 14 6 4.6495 -2.9806 -1.4411 15 6 2.5101 -4.1470 -1.4410 16 8 1.2973 -4.1464 -1.4406 17 6 3.2630 -5.4523 -1.4410 18 6 2.2683 -6.6148 -1.4412 19 1 1.5406 -6.4973 -2.2442 20 6 1.5630 -6.7298 -0.0729 21 8 1.5605 -8.1566 0.2340 22 6 2.6727 -8.7055 -0.2881 23 8 3.2959 -9.6280 0.1814 24 6 3.0070 -7.9656 -1.5672 25 1 -0.3633 -0.0776 1.0247 26 1 -0.3633 0.9264 -0.4450 27 1 -0.3634 -0.8485 -0.5797 28 1 5.0198 2.3202 0.9345 29 1 1.6084 -2.0281 0.5147 30 1 3.1499 -1.1382 0.5143 31 1 3.0416 -0.9516 -1.9559 32 1 1.5000 -1.8415 -1.9556 33 1 5.0129 -2.9811 -2.4688 34 1 5.0131 -2.0906 -0.9276 35 1 5.0124 -3.8706 -0.9270 36 1 3.8895 -5.5105 -2.3311 37 1 3.8899 -5.5102 -0.5512 38 1 2.1188 -6.1801 0.6867 39 1 0.5416 -6.3553 -0.1410 40 1 2.6425 -8.5189 -2.4327 41 1 4.0824 -7.8048 -1.6453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496684106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:45 Heat of formation + Delta-G solvation = -86.998282 kcal Electronic energy + Delta-G solvation = -23092.412322 eV Core-core repulsion = 19587.828011 eV Total energy + Delta-G solvation = -3504.584311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.30444 -39.77624 -37.74869 -36.43384 -35.01769 -34.48279 -31.73965 -30.06099 -28.72283 -27.40383 -26.60589 -25.91594 -23.52859 -21.65587 -21.49870 -20.81038 -19.11640 -17.59058 -17.01012 -16.91552 -16.69816 -16.62524 -15.97397 -15.56259 -15.13242 -14.63968 -14.13838 -13.82587 -13.63684 -13.57819 -13.08947 -12.99840 -12.87931 -12.71183 -12.55338 -12.30350 -12.13034 -11.77400 -11.68609 -11.56409 -11.52167 -11.03578 -10.82234 -10.67839 -10.54897 -10.48334 -9.91988 -9.72814 -9.60384 -8.70006 -8.49840 -6.87268 -6.09542 -3.50271 1.63268 2.63259 3.05229 3.13429 3.19137 3.39152 3.46626 3.68423 3.90236 4.19389 4.32669 4.43396 4.65600 4.84085 4.94889 5.03273 5.06928 5.14528 5.22823 5.26953 5.32263 5.43540 5.46089 5.67344 5.69851 5.78196 6.01570 6.20294 6.30595 6.37864 6.41925 6.48808 6.64712 6.71707 6.85416 7.13192 7.51670 7.96345 8.21237 8.29825 8.90350 9.62059 10.04532 11.05973 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.003991 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.228724 B = 7014.276884 C = 7147.865551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.610 5.610 3 C -0.272 4.272 4 H 0.080 0.920 5 C 0.037 3.963 6 N -0.897 5.897 7 Si 0.877 3.123 8 H -0.287 1.287 9 H -0.300 1.300 10 H -0.271 1.271 11 C 0.130 3.870 12 C 0.096 3.904 13 N -0.608 5.608 14 C 0.073 3.927 15 C 0.506 3.494 16 O -0.542 6.542 17 C -0.137 4.137 18 C -0.105 4.105 19 H 0.111 0.889 20 C 0.063 3.937 21 O -0.355 6.355 22 C 0.485 3.515 23 O -0.454 6.454 24 C -0.184 4.184 25 H 0.007 0.993 26 H 0.046 0.954 27 H 0.030 0.970 28 H 0.264 0.736 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 -16.946 -6.034 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.334 5.334 3 C -0.400 4.400 4 H 0.098 0.902 5 C -0.164 4.164 6 N -0.538 5.538 7 Si 0.707 3.293 8 H -0.216 1.216 9 H -0.228 1.228 10 H -0.195 1.195 11 C 0.003 3.997 12 C -0.028 4.028 13 N -0.341 5.341 14 C -0.071 4.071 15 C 0.293 3.707 16 O -0.420 6.420 17 C -0.177 4.177 18 C -0.124 4.124 19 H 0.130 0.870 20 C -0.011 4.011 21 O -0.272 6.272 22 C 0.325 3.675 23 O -0.337 6.337 24 C -0.222 4.222 25 H 0.025 0.975 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.004 -17.335 -5.637 18.229 hybrid contribution 0.579 -0.319 0.771 1.015 sum 0.575 -17.654 -4.866 18.322 Atomic orbital electron populations 1.21113 0.84207 0.99244 0.97579 1.43998 1.01000 1.01761 1.86669 1.18851 1.06041 0.90837 1.24279 0.90206 1.25474 0.96878 0.96438 0.97569 1.69884 1.08493 1.36082 1.39384 0.86953 0.77951 0.79832 0.84558 1.21564 1.22788 1.19547 1.21418 0.96461 0.87987 0.93835 1.22418 0.96947 0.82341 1.01119 1.48038 1.07134 1.06802 1.72149 1.21878 0.79709 1.03603 1.01874 1.20459 0.88116 0.85271 0.76831 1.90692 1.13681 1.87374 1.50254 1.21849 0.98703 0.91949 1.05164 1.22177 0.97925 0.92609 0.99682 0.87028 1.24239 1.04979 0.76158 0.95686 1.87307 1.40364 1.24645 1.74914 1.23309 0.77413 0.81916 0.84890 1.90706 1.48388 1.27947 1.66647 1.23033 1.04157 0.96678 0.98372 0.97471 0.93541 0.95086 0.92662 0.94138 0.92931 0.89785 0.90461 0.92345 0.90176 0.91443 0.87801 0.88462 0.89859 0.86027 0.86405 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.52 10.70 59.85 0.64 3.16 16 2 N -0.61 -14.42 2.47 -181.12 -0.45 -14.86 16 3 C -0.27 -7.39 9.88 -15.06 -0.15 -7.54 16 4 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 5 C 0.04 1.03 5.29 -17.43 -0.09 0.94 16 6 N -0.90 -26.25 13.97 55.49 0.78 -25.48 16 7 Si 0.88 21.62 25.10 -169.99 -4.27 17.36 16 8 H -0.29 -6.67 6.68 56.52 0.38 -6.29 16 9 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.13 2.75 4.86 -4.04 -0.02 2.73 16 12 C 0.10 1.73 5.73 -4.04 -0.02 1.70 16 13 N -0.61 -8.69 2.87 -181.57 -0.52 -9.21 16 14 C 0.07 0.81 10.24 59.85 0.61 1.42 16 15 C 0.51 6.59 7.50 -10.99 -0.08 6.50 16 16 O -0.54 -8.70 14.85 5.55 0.08 -8.62 16 17 C -0.14 -1.10 3.45 -27.89 -0.10 -1.20 16 18 C -0.10 -0.83 2.75 -89.13 -0.25 -1.07 16 19 H 0.11 0.90 7.89 -51.93 -0.41 0.49 16 20 C 0.06 0.61 6.61 37.87 0.25 0.86 16 21 O -0.35 -4.12 11.17 -39.75 -0.44 -4.56 16 22 C 0.48 5.34 8.50 36.40 0.31 5.65 16 23 O -0.45 -6.52 18.00 -18.31 -0.33 -6.85 16 24 C -0.18 -1.25 6.61 -26.72 -0.18 -1.42 16 25 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.05 0.91 8.00 -51.93 -0.42 0.50 16 27 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.05 1.20 3.37 -51.93 -0.18 1.02 16 31 H 0.08 1.61 8.07 -51.93 -0.42 1.19 16 32 H 0.08 1.44 7.42 -51.93 -0.39 1.06 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 35 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 36 H 0.10 0.60 8.11 -51.93 -0.42 0.17 16 37 H 0.10 0.67 7.22 -51.93 -0.38 0.30 16 38 H 0.08 0.79 7.69 -51.93 -0.40 0.39 16 39 H 0.12 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.11 0.58 7.74 -51.92 -0.40 0.18 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -33.41 336.51 -5.42 -38.83 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -6.26 Total: -3.41 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 0.93 Total: 11.73 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.19 Total: -49.55 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.69 Total: -20.03 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.27 Total: 17.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.41 -5.42 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496684106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.171 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds