Wall clock time and date at job start Tue Mar 31 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 120.00370 * 2 1 4 4 H 1.08006 * 119.99701 * 322.02961 * 3 2 1 5 5 C 1.38808 * 120.00136 * 142.02546 * 3 2 1 6 6 N 1.31624 * 120.00073 * 157.07675 * 5 3 2 7 7 Si 1.86796 * 120.00095 * 337.08060 * 5 3 2 8 8 H 1.48499 * 109.47132 * 95.68565 * 7 5 3 9 9 H 1.48500 * 109.47332 * 215.68339 * 7 5 3 10 10 H 1.48501 * 109.47216 * 335.68592 * 7 5 3 11 11 C 1.46504 * 119.99920 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46768 * 90.00090 * 11 2 1 13 13 N 1.46493 * 109.46965 * 180.02562 * 12 11 2 14 14 C 1.46506 * 119.99975 * 269.99981 * 13 12 11 15 15 C 1.34776 * 120.00346 * 89.99866 * 13 12 11 16 16 O 1.21284 * 119.99755 * 359.97438 * 15 13 12 17 17 C 1.50695 * 120.00378 * 179.97438 * 15 13 12 18 18 C 1.52997 * 109.47386 * 180.02562 * 17 15 13 19 19 H 1.08998 * 110.62206 * 51.90925 * 18 17 15 20 20 C 1.54367 * 110.70119 * 288.62480 * 18 17 15 21 21 O 1.45949 * 105.07098 * 223.79362 * 20 18 17 22 22 C 1.34569 * 108.40318 * 32.43709 * 21 20 18 23 23 O 1.20820 * 125.94168 * 146.68686 * 22 21 20 24 24 C 1.51506 * 108.10669 * 326.66887 * 22 21 20 25 25 H 1.08998 * 109.46994 * 265.66719 * 1 2 3 26 26 H 1.09002 * 109.46921 * 25.65836 * 1 2 3 27 27 H 1.08996 * 109.47511 * 145.65949 * 1 2 3 28 28 H 0.97000 * 119.99973 * 179.97438 * 6 5 3 29 29 H 1.08995 * 109.46922 * 330.00282 * 11 2 1 30 30 H 1.08993 * 109.47081 * 209.99902 * 11 2 1 31 31 H 1.09000 * 109.47040 * 59.99962 * 12 11 2 32 32 H 1.09006 * 109.47003 * 300.00109 * 12 11 2 33 33 H 1.09006 * 109.46823 * 270.00237 * 14 13 12 34 34 H 1.09002 * 109.46844 * 29.99767 * 14 13 12 35 35 H 1.08994 * 109.47265 * 150.00397 * 14 13 12 36 36 H 1.09002 * 109.47465 * 300.00551 * 17 15 13 37 37 H 1.09005 * 109.47099 * 59.99761 * 17 15 13 38 38 H 1.09000 * 110.31930 * 342.69061 * 20 18 17 39 39 H 1.08999 * 110.31780 * 104.89121 * 20 18 17 40 40 H 1.09001 * 110.40408 * 261.58722 * 24 22 21 41 41 H 1.09008 * 110.50125 * 139.22062 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7812 2.0222 -0.5755 5 6 3.3175 1.3131 0.7397 6 7 4.2040 2.2311 0.4174 7 14 3.6308 0.1814 2.1924 8 1 4.4692 -0.9639 1.7558 9 1 4.3367 0.9323 3.2616 10 1 2.3358 -0.3238 2.7147 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 7 3.1844 -2.9800 -1.4413 14 6 4.6495 -2.9806 -1.4411 15 6 2.5101 -4.1470 -1.4410 16 8 1.2973 -4.1464 -1.4406 17 6 3.2630 -5.4523 -1.4410 18 6 2.2683 -6.6148 -1.4412 19 1 1.5406 -6.4973 -2.2442 20 6 1.5630 -6.7298 -0.0729 21 8 1.5605 -8.1566 0.2340 22 6 2.6727 -8.7055 -0.2881 23 8 3.2959 -9.6280 0.1814 24 6 3.0070 -7.9656 -1.5672 25 1 -0.3633 -0.0776 1.0247 26 1 -0.3633 0.9264 -0.4450 27 1 -0.3634 -0.8485 -0.5797 28 1 5.0198 2.3202 0.9345 29 1 1.6084 -2.0281 0.5147 30 1 3.1499 -1.1382 0.5143 31 1 3.0416 -0.9516 -1.9559 32 1 1.5000 -1.8415 -1.9556 33 1 5.0129 -2.9811 -2.4688 34 1 5.0131 -2.0906 -0.9276 35 1 5.0124 -3.8706 -0.9270 36 1 3.8895 -5.5105 -2.3311 37 1 3.8899 -5.5102 -0.5512 38 1 2.1188 -6.1801 0.6867 39 1 0.5416 -6.3553 -0.1410 40 1 2.6425 -8.5189 -2.4327 41 1 4.0824 -7.8048 -1.6453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496684106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:45 Heat of formation + Delta-G solvation = -109.206521 kcal Electronic energy + Delta-G solvation = -23093.375344 eV Core-core repulsion = 19587.828011 eV Total energy + Delta-G solvation = -3505.547333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.10208 -40.82196 -38.67277 -38.02398 -36.33825 -35.23913 -33.79766 -31.27780 -29.62800 -28.24535 -28.12133 -27.32972 -24.97413 -22.88278 -22.37791 -22.12919 -20.09479 -18.84232 -18.46887 -17.86211 -17.76626 -17.42135 -17.15503 -16.99828 -16.43892 -15.86633 -15.33678 -15.14018 -14.85944 -14.64726 -14.51291 -14.32743 -14.07165 -13.82355 -13.55782 -13.52910 -13.30671 -13.09855 -12.87956 -12.77805 -12.53310 -12.35711 -12.27809 -12.20085 -11.87092 -11.55543 -11.48254 -11.30623 -10.76557 -10.67837 -9.75947 -8.77672 -8.23883 -5.62538 0.83433 1.22850 1.38712 1.49237 1.66610 2.02050 2.37287 2.37487 3.00143 3.03636 3.22755 3.45029 3.58393 3.63460 3.91620 4.11020 4.21997 4.32131 4.36504 4.45013 4.53064 4.55663 4.65960 4.68106 4.69390 4.73218 4.84314 4.87503 4.92311 4.95220 5.06307 5.11044 5.12898 5.49850 5.66666 5.91014 6.13505 6.32756 6.49435 6.92770 7.20364 7.57024 8.01336 8.95614 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.003991 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.228724 B = 7014.276884 C = 7147.865551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.625 5.625 3 C -0.267 4.267 4 H 0.046 0.954 5 C -0.008 4.008 6 N -0.939 5.939 7 Si 0.935 3.065 8 H -0.263 1.263 9 H -0.305 1.305 10 H -0.275 1.275 11 C 0.132 3.868 12 C 0.113 3.887 13 N -0.616 5.616 14 C 0.068 3.932 15 C 0.502 3.498 16 O -0.577 6.577 17 C -0.127 4.127 18 C -0.097 4.097 19 H 0.112 0.888 20 C 0.058 3.942 21 O -0.378 6.378 22 C 0.480 3.520 23 O -0.497 6.497 24 C -0.164 4.164 25 H 0.012 0.988 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.265 0.735 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.142 0.858 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 -19.264 -6.674 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.350 5.350 3 C -0.397 4.397 4 H 0.064 0.936 5 C -0.205 4.205 6 N -0.583 5.583 7 Si 0.764 3.236 8 H -0.189 1.189 9 H -0.234 1.234 10 H -0.200 1.200 11 C 0.006 3.994 12 C -0.013 4.013 13 N -0.349 5.349 14 C -0.074 4.074 15 C 0.291 3.709 16 O -0.457 6.457 17 C -0.166 4.166 18 C -0.116 4.116 19 H 0.130 0.870 20 C -0.015 4.015 21 O -0.296 6.296 22 C 0.323 3.677 23 O -0.383 6.383 24 C -0.202 4.202 25 H 0.030 0.970 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.160 0.840 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.036 -19.687 -6.295 20.695 hybrid contribution 0.138 0.428 0.930 1.033 sum 1.174 -19.259 -5.365 20.027 Atomic orbital electron populations 1.21176 0.82464 1.00226 0.98202 1.44146 1.02282 1.01510 1.87067 1.18721 1.06111 0.91468 1.23370 0.93643 1.25965 0.96783 0.98233 0.99557 1.69984 1.09260 1.38408 1.40619 0.85994 0.77811 0.78804 0.80964 1.18913 1.23370 1.20000 1.21415 0.95421 0.86855 0.95740 1.21834 0.96888 0.84181 0.98399 1.48091 1.08437 1.05741 1.72610 1.22099 0.77550 1.04131 1.03632 1.21350 0.87978 0.86243 0.75284 1.90683 1.15561 1.87935 1.51560 1.21925 0.98494 0.88331 1.07887 1.22122 0.97933 0.93251 0.98297 0.87002 1.24325 1.04958 0.75124 0.97092 1.87277 1.41003 1.25696 1.75604 1.24023 0.76561 0.81262 0.85834 1.90682 1.49691 1.29927 1.68003 1.23015 1.05701 0.95119 0.96354 0.96981 0.93497 0.93034 0.92538 0.93682 0.94291 0.91518 0.91330 0.90035 0.92819 0.87720 0.84084 0.86413 0.89754 0.86903 0.84020 0.84219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.97 10.70 127.77 1.37 6.33 16 2 N -0.62 -29.46 2.47 -726.93 -1.79 -31.26 16 3 C -0.27 -14.83 9.88 84.03 0.83 -14.00 16 4 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 5 C -0.01 -0.44 5.29 84.86 0.45 0.01 16 6 N -0.94 -55.98 13.97 21.65 0.30 -55.68 16 7 Si 0.94 44.54 25.10 68.60 1.72 46.27 16 8 H -0.26 -11.33 6.68 99.48 0.66 -10.67 16 9 H -0.31 -14.72 7.11 99.48 0.71 -14.01 16 10 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 11 C 0.13 5.46 4.86 86.38 0.42 5.88 16 12 C 0.11 3.97 5.73 86.38 0.50 4.46 16 13 N -0.62 -16.00 2.87 -846.74 -2.43 -18.44 16 14 C 0.07 1.27 10.24 127.77 1.31 2.57 16 15 C 0.50 11.49 7.50 87.66 0.66 12.15 16 16 O -0.58 -17.43 14.85 -3.04 -0.05 -17.47 16 17 C -0.13 -1.42 3.45 29.85 0.10 -1.32 16 18 C -0.10 -1.16 2.75 -9.83 -0.03 -1.19 16 19 H 0.11 1.42 7.89 -2.39 -0.02 1.40 16 20 C 0.06 1.02 6.61 72.45 0.48 1.50 16 21 O -0.38 -8.33 11.17 -55.14 -0.62 -8.94 16 22 C 0.48 9.60 8.50 71.49 0.61 10.21 16 23 O -0.50 -13.74 18.00 21.57 0.39 -13.35 16 24 C -0.16 -1.51 6.61 30.60 0.20 -1.31 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.05 1.84 8.00 -2.39 -0.02 1.82 16 27 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 28 H 0.27 14.91 8.31 -92.71 -0.77 14.13 16 29 H 0.04 1.81 8.07 -2.39 -0.02 1.79 16 30 H 0.04 1.72 3.37 -2.39 -0.01 1.71 16 31 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 32 H 0.07 2.52 7.42 -2.38 -0.02 2.50 16 33 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.05 1.30 8.07 -2.39 -0.02 1.29 16 35 H 0.10 1.16 6.44 -2.39 -0.02 1.14 16 36 H 0.14 0.66 8.11 -2.39 -0.02 0.64 16 37 H 0.12 0.95 7.22 -2.38 -0.02 0.93 16 38 H 0.08 1.42 7.69 -2.39 -0.02 1.41 16 39 H 0.11 2.14 8.07 -2.39 -0.02 2.12 16 40 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.14 0.61 7.74 -2.38 -0.02 0.59 16 Total: -1.00 -75.21 336.51 5.39 -69.82 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 0.98 Total: 3.76 kcal Atomic # 6 Polarization: 18.40 SS G_CDS: 6.89 Total: 25.29 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -3.93 Total: -105.37 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.27 Total: -39.77 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.72 Total: 46.27 kcal Total: -75.21 5.39 -69.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496684106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.386 kcal (2) G-P(sol) polarization free energy of solvation -75.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds