Wall clock time and date at job start Tue Mar 31 2020 02:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.52995 * 109.46937 * 90.00021 * 3 2 1 5 5 C 1.52996 * 109.47299 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47428 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99638 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00454 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99432 * 180.02562 * 7 6 5 10 10 N 1.31623 * 120.00373 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99928 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47023 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47280 * 119.99514 * 11 9 7 14 14 H 1.48502 * 109.47231 * 239.99718 * 11 9 7 15 15 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 16 16 O 1.21283 * 120.00089 * 179.97438 * 15 2 1 17 17 C 1.50702 * 120.00335 * 0.02562 * 15 2 1 18 18 C 1.53003 * 109.47196 * 179.97438 * 17 15 2 19 19 H 1.09001 * 110.76886 * 305.69704 * 18 17 15 20 20 C 1.54574 * 110.86878 * 69.22328 * 18 17 15 21 21 O 1.46146 * 104.28691 * 144.85820 * 20 18 17 22 22 C 1.34059 * 110.03263 * 329.67536 * 21 20 18 23 23 O 1.20822 * 125.09649 * 200.68234 * 22 21 20 24 24 C 1.51324 * 109.81062 * 20.67969 * 22 21 20 25 25 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 26 26 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 27 27 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 29 29 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 30 30 H 1.08999 * 109.47267 * 300.00296 * 4 3 2 31 31 H 1.09000 * 109.46990 * 60.00037 * 4 3 2 32 32 H 1.08999 * 109.47334 * 300.00416 * 5 4 3 33 33 H 1.09000 * 109.46938 * 60.00166 * 5 4 3 34 34 H 0.96998 * 120.00017 * 0.02562 * 6 5 4 35 35 H 0.97000 * 119.99907 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.47188 * 299.99755 * 17 15 2 37 37 H 1.08996 * 109.47042 * 59.99980 * 17 15 2 38 38 H 1.09000 * 110.43827 * 263.75323 * 20 18 17 39 39 H 1.08999 * 110.43965 * 26.26592 * 20 18 17 40 40 H 1.09004 * 110.37176 * 238.84903 * 24 22 21 41 41 H 1.09001 * 110.36961 * 116.52402 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2181 3.0350 1.4426 6 7 3.4628 3.4576 2.8238 7 6 4.1361 4.6235 3.0739 8 1 4.4871 5.2312 2.2531 9 6 4.3684 5.0236 4.3827 10 7 3.9412 4.2826 5.3832 11 14 5.2875 6.6136 4.7241 12 1 5.6576 7.2573 3.4381 13 1 4.4176 7.5306 5.5036 14 1 6.5173 6.3173 5.5020 15 6 2.1388 -1.1672 -0.0005 16 8 3.3517 -1.1673 -0.0010 17 6 1.3853 -2.4723 -0.0017 18 6 2.3795 -3.6353 -0.0027 19 1 3.0827 -3.5419 -0.8303 20 6 3.1268 -3.7221 1.3476 21 8 3.3137 -5.1552 1.5649 22 6 2.3089 -5.8401 1.0006 23 8 1.9853 -6.9666 1.2939 24 6 1.6407 -4.9909 -0.0587 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 3.1500 1.1383 -0.5139 29 1 1.6085 2.0284 -0.5138 30 1 1.5002 1.8406 1.9563 31 1 3.0416 0.9507 1.9563 32 1 4.1705 2.9043 0.9288 33 1 2.6294 3.7949 0.9286 34 1 3.1479 2.9115 3.5610 35 1 4.1032 4.5625 6.2977 36 1 0.7583 -2.5307 0.8880 37 1 0.7590 -2.5294 -0.8919 38 1 4.0891 -3.2143 1.2834 39 1 2.5214 -3.2928 2.1459 40 1 0.5841 -4.8570 0.1732 41 1 1.7593 -5.4473 -1.0414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498534951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:17 Heat of formation + Delta-G solvation = -111.678729 kcal Electronic energy + Delta-G solvation = -22086.294161 eV Core-core repulsion = 18580.639625 eV Total energy + Delta-G solvation = -3505.654536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35449 -40.02566 -37.76360 -36.36310 -34.90792 -34.61316 -32.33211 -30.22466 -29.10352 -27.60043 -27.05189 -25.08828 -22.99483 -21.65661 -21.59591 -20.93494 -19.34372 -17.78932 -17.08592 -17.07728 -17.00004 -16.55130 -16.17847 -15.67351 -14.73303 -14.57340 -14.51129 -14.11867 -13.89430 -13.64856 -13.36026 -13.24841 -13.07980 -12.75304 -12.70652 -12.44945 -12.01768 -11.91747 -11.66953 -11.61778 -10.96772 -10.87945 -10.86813 -10.76936 -10.53356 -10.44786 -10.07246 -9.91160 -9.72800 -8.87939 -8.81430 -6.92432 -5.76617 -3.05469 1.75317 2.39883 2.75350 2.99690 3.43414 3.48791 3.51285 3.56644 3.76410 4.06848 4.21674 4.49636 4.59426 4.74318 4.75875 4.87229 4.97462 5.02108 5.10011 5.17045 5.17813 5.35363 5.42286 5.43961 5.55996 5.59570 5.63694 5.83167 6.02383 6.25810 6.35092 6.41074 6.46788 6.82198 6.84735 7.14701 7.17254 7.70211 7.95634 8.42285 9.53281 10.11392 10.45794 11.46487 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023092 B = 0.002825 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.274696 B = 9908.551704 C =10695.170296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.614 5.614 3 C 0.118 3.882 4 C -0.138 4.138 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C 0.508 3.492 16 O -0.533 6.533 17 C -0.133 4.133 18 C -0.107 4.107 19 H 0.109 0.891 20 C 0.062 3.938 21 O -0.347 6.347 22 C 0.483 3.517 23 O -0.462 6.462 24 C -0.184 4.184 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 -15.559 -15.256 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.347 5.347 3 C -0.005 4.005 4 C -0.177 4.177 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.089 0.911 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.296 3.704 16 O -0.409 6.409 17 C -0.173 4.173 18 C -0.126 4.126 19 H 0.127 0.873 20 C -0.012 4.012 21 O -0.264 6.264 22 C 0.323 3.677 23 O -0.346 6.346 24 C -0.222 4.222 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.143 0.857 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.004 -15.996 -15.034 24.124 hybrid contribution 0.123 0.954 0.483 1.076 sum -9.881 -15.042 -14.551 23.144 Atomic orbital electron populations 1.21867 0.79467 1.03189 1.02327 1.47915 1.07087 1.06481 1.73207 1.21544 0.97527 0.83275 0.98104 1.22047 1.01062 0.99019 0.95605 1.20537 0.96022 0.91873 0.88758 1.42358 1.68352 1.25998 1.01075 1.19288 1.27747 0.98133 0.91827 0.91093 1.24761 1.01726 0.99090 0.95567 1.69674 1.51588 1.38871 0.98146 0.86102 0.79196 0.83043 0.77767 1.20535 1.21868 1.21819 1.20516 0.88140 0.85273 0.76472 1.90741 1.13707 1.87257 1.49244 1.21763 0.98652 0.91571 1.05266 1.22287 0.97598 0.92699 1.00057 0.87254 1.24416 1.04332 0.76192 0.96284 1.87103 1.45075 1.21572 1.72603 1.23084 0.77544 0.86238 0.80792 1.90719 1.61480 1.17827 1.64614 1.22989 1.02515 0.95534 1.01202 0.92171 0.90647 0.91145 0.89681 0.90466 0.92009 0.91604 0.96219 0.96437 0.78339 0.93560 0.88163 0.87763 0.85718 0.89579 0.86779 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 10.29 59.85 0.62 1.05 16 2 N -0.61 -5.89 2.87 -181.57 -0.52 -6.41 16 3 C 0.12 1.42 5.45 -4.04 -0.02 1.40 16 4 C -0.14 -2.19 5.65 -26.74 -0.15 -2.34 16 5 C 0.16 3.13 6.26 -4.04 -0.03 3.11 16 6 N -0.73 -18.99 5.60 -59.91 -0.34 -19.33 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 10 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 11 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 C 0.51 5.08 7.49 -10.99 -0.08 5.00 16 16 O -0.53 -7.41 14.53 5.55 0.08 -7.33 16 17 C -0.13 -0.73 3.55 -27.88 -0.10 -0.83 16 18 C -0.11 -0.69 2.75 -89.01 -0.24 -0.94 16 19 H 0.11 0.75 7.97 -51.93 -0.41 0.34 16 20 C 0.06 0.54 6.67 37.98 0.25 0.79 16 21 O -0.35 -3.91 11.06 -38.46 -0.43 -4.33 16 22 C 0.48 5.04 8.58 36.31 0.31 5.35 16 23 O -0.46 -6.47 18.00 -18.41 -0.33 -6.80 16 24 C -0.18 -1.04 6.52 -26.79 -0.17 -1.21 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.39 7.89 -51.93 -0.41 -0.02 16 27 H 0.07 0.22 6.44 -51.93 -0.33 -0.12 16 28 H 0.08 1.14 7.42 -51.93 -0.39 0.76 16 29 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.38 10.42 7.67 -40.82 -0.31 10.11 16 35 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.10 0.41 7.98 -51.93 -0.41 -0.01 16 37 H 0.10 0.31 7.40 -51.93 -0.38 -0.08 16 38 H 0.12 1.22 7.68 -51.93 -0.40 0.83 16 39 H 0.09 0.69 7.82 -51.93 -0.41 0.28 16 40 H 0.11 0.42 7.80 -51.93 -0.40 0.02 16 41 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 343.64 15.07 5.18 5.18 Total: -1.00 -36.27 343.64 -6.88 -43.14 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.36 Total: 2.32 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 0.14 Total: 3.89 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.13 Total: -53.63 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.68 Total: -18.47 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.27 -6.88 -43.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498534951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.536 kcal (2) G-P(sol) polarization free energy of solvation -36.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds