Wall clock time and date at job start Tue Mar 31 2020 03:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 O 1.42896 * 109.47417 * 59.99790 * 9 7 2 12 12 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 13 13 N 1.46894 * 109.47515 * 179.97438 * 12 9 7 14 14 C 1.46960 * 111.00201 * 293.79994 * 13 12 9 15 15 C 1.53047 * 109.36501 * 176.80734 * 14 13 12 16 16 N 1.46957 * 109.36506 * 58.40420 * 15 14 13 17 17 C 1.46899 * 111.00104 * 176.81082 * 16 15 14 18 18 C 1.53004 * 109.46977 * 313.80048 * 17 16 15 19 19 H 1.08998 * 110.75419 * 57.01772 * 18 17 16 20 20 C 1.55309 * 110.84646 * 180.71749 * 18 17 16 21 21 C 1.54949 * 100.94115 * 152.32136 * 20 18 17 22 22 O 1.43645 * 105.13608 * 323.55324 * 21 20 18 23 23 C 1.43242 * 109.97210 * 24.42728 * 22 21 20 24 24 C 1.46960 * 110.87742 * 300.67858 * 16 15 14 25 25 C 1.46957 * 111.00322 * 170.00049 * 13 12 9 26 26 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 27 27 H 0.96708 * 114.00101 * 59.99427 * 11 9 7 28 28 H 1.09002 * 109.47153 * 299.99998 * 12 9 7 29 29 H 1.08998 * 109.47533 * 59.99628 * 12 9 7 30 30 H 1.08996 * 109.48769 * 296.77789 * 14 13 12 31 31 H 1.09002 * 109.48610 * 56.84336 * 14 13 12 32 32 H 1.09003 * 109.49082 * 298.43417 * 15 14 13 33 33 H 1.09004 * 109.48758 * 178.36998 * 15 14 13 34 34 H 1.09004 * 109.47520 * 73.79690 * 17 16 15 35 35 H 1.08994 * 109.47279 * 193.80044 * 17 16 15 36 36 H 1.09003 * 111.12176 * 270.23644 * 20 18 17 37 37 H 1.08998 * 111.12569 * 34.39713 * 20 18 17 38 38 H 1.08994 * 110.30685 * 204.63954 * 21 20 18 39 39 H 1.08997 * 110.30747 * 82.46527 * 21 20 18 40 40 H 1.08993 * 109.82869 * 238.77727 * 23 22 21 41 41 H 1.09002 * 109.82685 * 117.79807 * 23 22 21 42 42 H 1.09006 * 109.48624 * 299.35027 * 24 16 15 43 43 H 1.09003 * 109.50346 * 179.30021 * 24 16 15 44 44 H 1.09004 * 109.48815 * 303.15742 * 25 13 12 45 45 H 1.08994 * 109.48985 * 63.22302 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 8 3.9874 -0.5213 1.1674 12 6 4.0214 -2.6367 -0.0001 13 7 5.4903 -2.6368 -0.0001 14 6 6.0170 -2.0831 -1.2554 15 6 7.5448 -2.0270 -1.1837 16 7 8.0714 -3.3782 -0.9456 17 6 9.5404 -3.3783 -0.9456 18 6 10.0504 -2.5757 -2.1443 19 1 9.6561 -1.5597 -2.1248 20 6 11.6030 -2.5701 -2.1854 21 6 11.8563 -2.4002 -3.7046 22 8 10.8177 -3.1582 -4.3451 23 6 9.6901 -3.2797 -3.4702 24 6 7.5447 -3.9319 0.3096 25 6 6.0169 -3.9880 0.2380 26 1 -0.4850 0.8401 -0.0004 27 1 3.7017 -0.9253 1.9983 28 1 3.6577 -3.1507 0.8897 29 1 3.6584 -3.1504 -0.8902 30 1 5.7151 -2.7184 -2.0880 31 1 5.6228 -1.0777 -1.4030 32 1 7.8468 -1.3701 -0.3680 33 1 7.9392 -1.6437 -2.1248 34 1 9.9038 -2.9246 -0.0235 35 1 9.9037 -4.4036 -1.0138 36 1 12.0078 -1.7286 -1.6231 37 1 12.0090 -3.5143 -1.8225 38 1 12.8350 -2.7985 -3.9717 39 1 11.7852 -1.3492 -3.9847 40 1 9.4782 -4.3325 -3.2842 41 1 8.8204 -2.7998 -3.9191 42 1 7.8467 -3.2965 1.1423 43 1 7.9390 -4.9373 0.4577 44 1 5.6226 -4.3714 1.1791 45 1 5.7150 -4.6449 -0.5777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615264647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:16 Heat of formation + Delta-G solvation = -77.153591 kcal Electronic energy + Delta-G solvation = -23515.032011 eV Core-core repulsion = 20146.707692 eV Total energy + Delta-G solvation = -3368.324319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.07573 -38.86129 -36.61423 -34.87452 -32.58638 -32.21586 -30.87096 -29.91649 -28.87482 -26.91467 -24.70132 -23.70258 -23.19070 -22.44363 -20.60013 -20.27344 -19.42779 -17.41303 -17.05697 -16.21477 -15.95022 -15.20671 -14.90538 -14.79496 -14.77381 -14.62400 -14.47855 -13.97230 -13.76066 -13.58690 -13.39931 -13.01475 -12.59992 -12.31461 -12.12536 -11.80101 -11.58380 -11.55802 -11.22354 -11.12807 -11.09899 -10.97658 -10.88663 -10.74865 -10.51468 -10.22459 -9.82947 -9.71794 -9.00290 -8.61236 -8.42541 -8.21739 -7.77821 -6.12291 -4.23340 3.39377 3.49080 3.62908 3.72950 3.76590 4.22945 4.30420 4.41585 4.54698 4.62676 4.87736 4.90571 5.01455 5.06785 5.21323 5.23990 5.25629 5.32812 5.40521 5.44904 5.50634 5.51812 5.58457 5.61169 5.63640 5.78778 5.82062 5.93861 5.96871 5.99847 6.05879 6.14289 6.20125 6.36878 6.62393 6.76836 6.93499 6.97299 7.27893 7.40837 7.57566 7.70652 8.30489 8.84726 9.12369 9.52914 10.98481 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.003594 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.034540 B = 7788.859098 C = 8281.838072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.083 3.917 3 Si 0.871 3.129 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.216 1.216 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.202 3.798 10 H 0.052 0.948 11 O -0.571 6.571 12 C 0.041 3.959 13 N -0.531 5.531 14 C 0.057 3.943 15 C 0.054 3.946 16 N -0.539 5.539 17 C 0.067 3.933 18 C -0.128 4.128 19 H 0.090 0.910 20 C -0.151 4.151 21 C 0.052 3.948 22 O -0.390 6.390 23 C 0.065 3.935 24 C 0.061 3.939 25 C 0.056 3.944 26 H 0.265 0.735 27 H 0.354 0.646 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.802 -6.772 -2.288 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.121 4.121 3 Si 0.697 3.303 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.138 1.138 7 C -0.603 4.603 8 H 0.089 0.911 9 C 0.144 3.856 10 H 0.069 0.931 11 O -0.376 6.376 12 C -0.086 4.086 13 N -0.256 5.256 14 C -0.072 4.072 15 C -0.074 4.074 16 N -0.265 5.265 17 C -0.060 4.060 18 C -0.146 4.146 19 H 0.109 0.891 20 C -0.189 4.189 21 C -0.025 4.025 22 O -0.309 6.309 23 C -0.012 4.012 24 C -0.067 4.067 25 C -0.072 4.072 26 H 0.074 0.926 27 H 0.199 0.801 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 22.929 -6.384 -2.932 23.981 hybrid contribution -0.211 0.519 0.539 0.778 sum 22.717 -5.864 -2.392 23.584 Atomic orbital electron populations 1.69961 1.06800 1.27448 1.48928 1.24989 0.94603 0.99990 0.92527 0.87028 0.83159 0.81765 0.78322 1.21498 1.22288 1.13790 1.21526 0.89958 0.94780 1.54067 0.91119 1.19702 0.92997 0.86990 0.85900 0.93086 1.86653 1.77929 1.56950 1.16059 1.22817 0.84401 1.01064 1.00353 1.62187 1.09279 1.20163 1.33936 1.22151 0.93220 1.00933 0.90870 1.22293 0.95347 0.88999 1.00774 1.62260 1.06405 1.22786 1.34999 1.22056 0.87981 0.99989 0.96018 1.22917 0.95149 1.00824 0.95754 0.89144 1.23297 0.95295 1.03253 0.97100 1.23330 0.91858 0.96120 0.91177 1.88403 1.26417 1.74778 1.41321 1.23128 0.88683 1.01003 0.88362 1.22137 0.95248 0.99314 0.90009 1.22116 0.93571 0.90771 1.00786 0.92604 0.80057 0.91276 0.94945 0.94553 0.89758 0.93919 0.90396 0.94407 0.90490 0.89920 0.90202 0.89907 0.92276 0.90603 0.91275 0.93991 0.90830 0.90623 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.87 21.86 26.99 -169.99 -4.59 17.27 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.22 -5.30 5.31 56.52 0.30 -5.00 16 7 C -0.57 -15.63 9.34 -34.44 -0.32 -15.96 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.20 4.67 2.19 -27.88 -0.06 4.61 16 10 H 0.05 1.23 5.92 -51.93 -0.31 0.92 16 11 O -0.57 -13.00 10.01 -35.23 -0.35 -13.35 16 12 C 0.04 0.80 4.56 -3.83 -0.02 0.78 16 13 N -0.53 -8.94 4.58 -234.48 -1.07 -10.01 16 14 C 0.06 0.90 5.41 -3.77 -0.02 0.88 16 15 C 0.05 0.70 4.95 -3.77 -0.02 0.68 16 16 N -0.54 -6.30 4.67 -234.46 -1.10 -7.40 16 17 C 0.07 0.63 4.60 -3.82 -0.02 0.61 16 18 C -0.13 -1.13 2.34 -88.67 -0.21 -1.33 16 19 H 0.09 0.84 6.15 -51.93 -0.32 0.52 16 20 C -0.15 -1.08 6.62 -24.48 -0.16 -1.24 16 21 C 0.05 0.42 7.78 38.19 0.30 0.72 16 22 O -0.39 -4.44 11.36 -35.23 -0.40 -4.84 16 23 C 0.06 0.66 7.10 37.88 0.27 0.93 16 24 C 0.06 0.72 5.58 -3.77 -0.02 0.70 16 25 C 0.06 0.79 5.61 -3.77 -0.02 0.76 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.35 7.27 9.04 45.56 0.41 7.68 16 28 H 0.07 1.33 8.03 -51.93 -0.42 0.91 16 29 H 0.03 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.47 6.34 -51.93 -0.33 1.14 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.90 5.58 -51.93 -0.29 0.61 16 34 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.80 7.76 -51.93 -0.40 0.40 16 41 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -31.37 341.14 -9.19 -40.56 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.20 Total: 4.76 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.40 Total: -5.55 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -1.40 Total: -44.00 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.75 Total: -18.19 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.59 Total: 17.27 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.37 -9.19 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615264647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.595 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds