Wall clock time and date at job start Tue Mar 31 2020 03:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 O 1.42896 * 109.47417 * 59.99790 * 9 7 2 12 12 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 13 13 N 1.46894 * 109.47515 * 179.97438 * 12 9 7 14 14 C 1.46960 * 111.00201 * 293.79994 * 13 12 9 15 15 C 1.53047 * 109.36501 * 176.80734 * 14 13 12 16 16 N 1.46957 * 109.36506 * 58.40420 * 15 14 13 17 17 C 1.46899 * 111.00104 * 176.81082 * 16 15 14 18 18 C 1.53004 * 109.46977 * 313.80048 * 17 16 15 19 19 H 1.08998 * 110.75419 * 57.01772 * 18 17 16 20 20 C 1.55309 * 110.84646 * 180.71749 * 18 17 16 21 21 C 1.54949 * 100.94115 * 152.32136 * 20 18 17 22 22 O 1.43645 * 105.13608 * 323.55324 * 21 20 18 23 23 C 1.43242 * 109.97210 * 24.42728 * 22 21 20 24 24 C 1.46960 * 110.87742 * 300.67858 * 16 15 14 25 25 C 1.46957 * 111.00322 * 170.00049 * 13 12 9 26 26 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 27 27 H 0.96708 * 114.00101 * 59.99427 * 11 9 7 28 28 H 1.09002 * 109.47153 * 299.99998 * 12 9 7 29 29 H 1.08998 * 109.47533 * 59.99628 * 12 9 7 30 30 H 1.08996 * 109.48769 * 296.77789 * 14 13 12 31 31 H 1.09002 * 109.48610 * 56.84336 * 14 13 12 32 32 H 1.09003 * 109.49082 * 298.43417 * 15 14 13 33 33 H 1.09004 * 109.48758 * 178.36998 * 15 14 13 34 34 H 1.09004 * 109.47520 * 73.79690 * 17 16 15 35 35 H 1.08994 * 109.47279 * 193.80044 * 17 16 15 36 36 H 1.09003 * 111.12176 * 270.23644 * 20 18 17 37 37 H 1.08998 * 111.12569 * 34.39713 * 20 18 17 38 38 H 1.08994 * 110.30685 * 204.63954 * 21 20 18 39 39 H 1.08997 * 110.30747 * 82.46527 * 21 20 18 40 40 H 1.08993 * 109.82869 * 238.77727 * 23 22 21 41 41 H 1.09002 * 109.82685 * 117.79807 * 23 22 21 42 42 H 1.09006 * 109.48624 * 299.35027 * 24 16 15 43 43 H 1.09003 * 109.50346 * 179.30021 * 24 16 15 44 44 H 1.09004 * 109.48815 * 303.15742 * 25 13 12 45 45 H 1.08994 * 109.48985 * 63.22302 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 8 3.9874 -0.5213 1.1674 12 6 4.0214 -2.6367 -0.0001 13 7 5.4903 -2.6368 -0.0001 14 6 6.0170 -2.0831 -1.2554 15 6 7.5448 -2.0270 -1.1837 16 7 8.0714 -3.3782 -0.9456 17 6 9.5404 -3.3783 -0.9456 18 6 10.0504 -2.5757 -2.1443 19 1 9.6561 -1.5597 -2.1248 20 6 11.6030 -2.5701 -2.1854 21 6 11.8563 -2.4002 -3.7046 22 8 10.8177 -3.1582 -4.3451 23 6 9.6901 -3.2797 -3.4702 24 6 7.5447 -3.9319 0.3096 25 6 6.0169 -3.9880 0.2380 26 1 -0.4850 0.8401 -0.0004 27 1 3.7017 -0.9253 1.9983 28 1 3.6577 -3.1507 0.8897 29 1 3.6584 -3.1504 -0.8902 30 1 5.7151 -2.7184 -2.0880 31 1 5.6228 -1.0777 -1.4030 32 1 7.8468 -1.3701 -0.3680 33 1 7.9392 -1.6437 -2.1248 34 1 9.9038 -2.9246 -0.0235 35 1 9.9037 -4.4036 -1.0138 36 1 12.0078 -1.7286 -1.6231 37 1 12.0090 -3.5143 -1.8225 38 1 12.8350 -2.7985 -3.9717 39 1 11.7852 -1.3492 -3.9847 40 1 9.4782 -4.3325 -3.2842 41 1 8.8204 -2.7998 -3.9191 42 1 7.8467 -3.2965 1.1423 43 1 7.9390 -4.9373 0.4577 44 1 5.6226 -4.3714 1.1791 45 1 5.7150 -4.6449 -0.5777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615264647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:15 Heat of formation + Delta-G solvation = -102.852815 kcal Electronic energy + Delta-G solvation = -23516.146413 eV Core-core repulsion = 20146.707692 eV Total energy + Delta-G solvation = -3369.438721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92377 -39.90864 -38.13265 -36.21583 -34.40697 -33.48039 -31.92782 -31.02477 -30.13574 -28.29804 -26.05623 -24.83938 -24.39822 -23.13712 -22.02558 -21.40013 -20.49656 -19.40121 -17.83162 -17.10266 -16.96729 -16.75145 -16.55318 -16.27883 -15.92915 -15.59236 -15.42609 -15.22559 -15.14179 -15.05389 -14.68693 -14.16084 -13.85181 -13.54155 -13.19787 -13.10282 -12.95964 -12.67623 -12.46717 -12.44505 -12.30321 -12.21603 -12.02283 -11.85131 -11.79022 -11.51292 -11.35568 -11.00599 -10.80701 -10.47089 -10.11722 -9.34056 -9.14294 -8.36040 -6.50567 1.39234 1.44802 1.75522 2.43808 2.82605 2.96853 3.00752 3.03222 3.57215 3.70388 3.92085 3.93692 4.04013 4.10023 4.19480 4.28723 4.31115 4.38415 4.38705 4.43879 4.51313 4.56232 4.62048 4.70188 4.72926 4.82050 4.86855 4.91070 4.93930 4.96452 4.98788 5.00396 5.07570 5.12036 5.28796 5.45858 5.48311 5.97672 5.99298 6.07589 6.09623 6.20936 6.26493 6.62311 7.22519 7.37957 8.78338 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.003594 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.034540 B = 7788.859098 C = 8281.838072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.028 3.972 3 Si 0.939 3.061 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.205 1.205 7 C -0.567 4.567 8 H 0.035 0.965 9 C 0.211 3.789 10 H 0.047 0.953 11 O -0.572 6.572 12 C 0.054 3.946 13 N -0.535 5.535 14 C 0.054 3.946 15 C 0.065 3.935 16 N -0.546 5.546 17 C 0.072 3.928 18 C -0.124 4.124 19 H 0.086 0.914 20 C -0.142 4.142 21 C 0.043 3.957 22 O -0.415 6.415 23 C 0.064 3.936 24 C 0.067 3.933 25 C 0.055 3.945 26 H 0.267 0.733 27 H 0.365 0.635 28 H 0.070 0.930 29 H 0.021 0.979 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.039 0.961 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.851 -6.711 -1.700 26.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.172 4.172 3 Si 0.763 3.237 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.126 1.126 7 C -0.605 4.605 8 H 0.054 0.946 9 C 0.153 3.847 10 H 0.064 0.936 11 O -0.378 6.378 12 C -0.074 4.074 13 N -0.260 5.260 14 C -0.074 4.074 15 C -0.063 4.063 16 N -0.271 5.271 17 C -0.055 4.055 18 C -0.142 4.142 19 H 0.105 0.895 20 C -0.180 4.180 21 C -0.032 4.032 22 O -0.335 6.335 23 C -0.012 4.012 24 C -0.061 4.061 25 C -0.073 4.073 26 H 0.076 0.924 27 H 0.212 0.788 28 H 0.089 0.911 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 26.006 -6.343 -2.336 26.870 hybrid contribution -1.167 0.405 0.335 1.280 sum 24.839 -5.938 -2.001 25.617 Atomic orbital electron populations 1.70085 1.08517 1.28414 1.50975 1.25859 0.95261 1.03655 0.92390 0.85982 0.82006 0.77353 0.78349 1.21207 1.22376 1.12635 1.21863 0.92489 0.93289 1.52850 0.94623 1.19460 0.90045 0.89249 0.85928 0.93572 1.86584 1.77586 1.57217 1.16419 1.22478 0.86607 0.98360 0.99928 1.62150 1.07158 1.22204 1.34443 1.22165 0.95376 0.99593 0.90257 1.22141 0.93068 0.89810 1.01256 1.62258 1.08086 1.21774 1.35015 1.22085 0.86158 1.00868 0.96428 1.22860 0.96522 1.00206 0.94660 0.89546 1.23276 0.93771 1.04454 0.96472 1.23546 0.91696 0.96158 0.91846 1.88377 1.27284 1.75377 1.42470 1.23090 0.88274 1.00788 0.89026 1.22110 0.93419 1.00666 0.89903 1.22219 0.95289 0.88887 1.00940 0.92440 0.78771 0.91119 0.96104 0.95182 0.91622 0.94590 0.89095 0.93623 0.89342 0.88300 0.89309 0.88482 0.91895 0.91022 0.92485 0.94289 0.88376 0.89821 0.95095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 2 C 0.03 1.62 5.47 84.66 0.46 2.09 16 3 Si 0.94 45.41 26.99 68.60 1.85 47.26 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.20 -9.45 5.31 99.48 0.53 -8.92 16 7 C -0.57 -31.90 9.34 25.60 0.24 -31.66 16 8 H 0.04 2.20 7.99 -2.91 -0.02 2.18 16 9 C 0.21 9.72 2.19 29.85 0.07 9.78 16 10 H 0.05 2.20 5.92 -2.39 -0.01 2.19 16 11 O -0.57 -25.16 10.01 -148.98 -1.49 -26.65 16 12 C 0.05 2.12 4.56 86.30 0.39 2.51 16 13 N -0.53 -17.41 4.58 -895.75 -4.10 -21.51 16 14 C 0.05 1.69 5.41 86.31 0.47 2.15 16 15 C 0.07 1.58 4.95 86.31 0.43 2.00 16 16 N -0.55 -11.43 4.67 -895.70 -4.19 -15.61 16 17 C 0.07 1.12 4.60 86.30 0.40 1.51 16 18 C -0.12 -1.88 2.34 -9.53 -0.02 -1.90 16 19 H 0.09 1.40 6.15 -2.39 -0.01 1.38 16 20 C -0.14 -1.59 6.62 32.05 0.21 -1.38 16 21 C 0.04 0.61 7.78 72.65 0.56 1.18 16 22 O -0.41 -8.91 11.36 -148.98 -1.69 -10.60 16 23 C 0.06 1.24 7.10 72.45 0.51 1.76 16 24 C 0.07 1.40 5.58 86.31 0.48 1.88 16 25 C 0.05 1.43 5.61 86.31 0.48 1.92 16 26 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 27 H 0.37 14.42 9.04 -74.05 -0.67 13.76 16 28 H 0.07 2.70 8.03 -2.39 -0.02 2.68 16 29 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 2.26 6.34 -2.39 -0.02 2.24 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.96 5.58 -2.38 -0.01 1.94 16 34 H 0.05 0.68 8.08 -2.39 -0.02 0.66 16 35 H 0.09 1.22 8.07 -2.39 -0.02 1.20 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.86 8.04 -2.39 -0.02 0.84 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 1.41 7.76 -2.39 -0.02 1.40 16 41 H 0.06 1.21 7.89 -2.39 -0.02 1.19 16 42 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 2.05 8.07 -2.38 -0.02 2.03 16 45 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -67.49 341.14 -4.52 -72.01 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.11 Total: 21.74 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 4.69 Total: -8.15 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -7.99 Total: -95.60 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -3.18 Total: -37.25 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.85 Total: 47.26 kcal Total: -67.49 -4.52 -72.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615264647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.846 kcal (2) G-P(sol) polarization free energy of solvation -67.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds