Wall clock time and date at job start Tue Mar 31 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.53000 * 109.46840 * 90.00442 * 4 3 2 6 6 N 1.46499 * 109.46840 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00002 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00140 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00175 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00164 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00095 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47021 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47345 * 119.99599 * 11 9 7 14 14 H 1.48503 * 109.46749 * 239.99856 * 11 9 7 15 15 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 16 16 O 1.21285 * 119.99996 * 179.97438 * 15 3 2 17 17 C 1.50698 * 120.00318 * 0.02562 * 15 3 2 18 18 H 1.09009 * 110.48582 * 319.29874 * 17 15 3 19 19 C 1.54107 * 110.55231 * 81.99626 * 17 15 3 20 20 N 1.47387 * 103.70219 * 118.55736 * 19 17 15 21 21 C 1.46494 * 125.37951 * 180.02562 * 20 19 17 22 22 C 1.33945 * 109.21140 * 0.11882 * 20 19 17 23 23 O 1.21591 * 123.04548 * 179.89733 * 22 20 19 24 24 N 1.33954 * 113.91801 * 359.92186 * 22 20 19 25 25 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 26 26 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 28 28 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 29 29 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 30 30 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 31 31 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 32 32 H 1.09001 * 109.47194 * 299.99493 * 5 4 3 33 33 H 1.08992 * 109.47399 * 59.99666 * 5 4 3 34 34 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 35 35 H 0.96993 * 120.00311 * 180.02562 * 10 9 7 36 36 H 1.09000 * 110.54824 * 237.19364 * 19 17 15 37 37 H 1.09001 * 110.54299 * 0.02562 * 19 17 15 38 38 H 1.09000 * 109.47406 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47181 * 300.07505 * 21 20 19 40 40 H 1.09009 * 109.46964 * 60.06863 * 21 20 19 41 41 H 0.96993 * 125.41178 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.7076 1.8312 1.7103 6 7 3.9520 2.5222 2.9788 7 6 5.1841 2.4493 3.5719 8 1 5.9756 1.8820 3.1047 9 6 5.4156 3.1036 4.7740 10 7 4.4509 3.7946 5.3436 11 14 7.0966 3.0047 5.5828 12 1 7.9997 2.1732 4.7472 13 1 7.6630 4.3709 5.7158 14 1 6.9631 2.3909 6.9284 15 6 2.2430 2.0165 -1.1672 16 8 2.6469 3.1602 -1.1672 17 6 1.9912 1.3064 -2.4723 18 1 2.3315 0.2724 -2.4159 19 6 0.4958 1.3644 -2.8400 20 7 0.4787 2.0987 -4.1178 21 6 -0.7208 2.4229 -4.8938 22 6 1.7336 2.4207 -4.4580 23 8 2.0096 3.0309 -5.4728 24 7 2.6570 2.0092 -3.5792 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.5818 1.6876 2.0284 31 1 2.0957 3.1410 1.1384 32 1 3.8746 0.7620 1.8406 33 1 4.3884 2.2153 0.9507 34 1 3.2411 3.0315 3.3986 35 1 4.6127 4.2521 6.1834 36 1 0.0942 0.3593 -2.9686 37 1 -0.0645 1.9072 -2.0788 38 1 -0.4354 2.9693 -5.7927 39 1 -1.2319 1.5019 -5.1745 40 1 -1.3879 3.0393 -4.2910 41 1 3.6129 2.1525 -3.6599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668517350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:27 Heat of formation + Delta-G solvation = -52.092938 kcal Electronic energy + Delta-G solvation = -22953.512549 eV Core-core repulsion = 19482.734598 eV Total energy + Delta-G solvation = -3470.777951 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.52368 -40.66093 -37.70628 -37.37389 -36.38289 -35.12372 -33.65072 -31.64609 -30.72509 -29.23020 -28.01987 -25.93719 -24.61539 -24.30352 -23.10688 -21.63933 -20.34915 -19.24734 -18.86427 -18.65780 -17.47444 -17.28152 -16.85668 -16.41845 -16.14087 -15.48340 -15.39968 -15.32309 -15.22015 -14.91782 -14.73105 -14.52691 -14.38877 -13.67604 -13.47640 -13.31859 -13.07565 -12.98236 -12.93680 -12.74493 -12.54516 -12.27359 -12.10097 -11.93305 -11.87514 -11.50762 -11.32922 -11.00208 -10.39355 -9.78213 -9.60377 -9.07628 -7.99506 -5.30010 1.29130 1.45456 1.47312 1.56824 1.57693 1.73600 2.06829 2.54042 2.83795 3.22309 3.27752 3.34475 3.79134 3.96356 4.05101 4.14222 4.19322 4.23190 4.43028 4.48548 4.50212 4.57208 4.69609 4.72066 4.83262 4.91915 4.95820 5.02766 5.12188 5.12585 5.42821 5.50772 5.53960 5.60669 5.96620 6.22383 6.28913 6.38396 7.04803 7.28598 7.40648 8.00889 8.25036 9.24035 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027967 B = 0.003381 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.923521 B = 8278.556624 C = 8822.464974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.087 3.913 3 N -0.593 5.593 4 C 0.123 3.877 5 C 0.148 3.852 6 N -0.744 5.744 7 C -0.249 4.249 8 H 0.074 0.926 9 C -0.073 4.073 10 N -0.968 5.968 11 Si 0.976 3.024 12 H -0.266 1.266 13 H -0.294 1.294 14 H -0.287 1.287 15 C 0.494 3.506 16 O -0.578 6.578 17 C 0.109 3.891 18 H 0.163 0.837 19 C 0.107 3.893 20 N -0.637 5.637 21 C 0.112 3.888 22 C 0.692 3.308 23 O -0.635 6.635 24 N -0.719 5.719 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.035 0.965 33 H -0.003 1.003 34 H 0.375 0.625 35 H 0.253 0.747 36 H 0.148 0.852 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.915 -14.932 -17.018 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.034 4.034 3 N -0.326 5.326 4 C -0.001 4.001 5 C 0.021 3.979 6 N -0.387 5.387 7 C -0.381 4.381 8 H 0.092 0.908 9 C -0.266 4.266 10 N -0.618 5.618 11 Si 0.805 3.195 12 H -0.191 1.191 13 H -0.222 1.222 14 H -0.214 1.214 15 C 0.281 3.719 16 O -0.456 6.456 17 C 0.000 4.000 18 H 0.180 0.820 19 C -0.015 4.015 20 N -0.376 5.376 21 C -0.028 4.028 22 C 0.392 3.608 23 O -0.517 6.517 24 N -0.378 5.378 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.065 0.935 28 H 0.132 0.868 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.015 0.985 34 H 0.207 0.793 35 H 0.062 0.938 36 H 0.166 0.834 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -14.586 -14.088 -17.609 26.857 hybrid contribution 1.385 0.976 1.076 2.007 sum -13.202 -13.112 -16.533 24.891 Atomic orbital electron populations 1.22372 0.93887 1.04303 1.02745 1.22140 0.96035 0.79562 1.05676 1.48041 1.64421 1.15865 1.04242 1.21316 0.95854 0.97487 0.85430 1.20970 0.94906 0.95401 0.86648 1.42415 1.12041 1.61144 1.23145 1.19621 0.90374 1.25581 1.02497 0.90833 1.25611 1.01635 1.00422 0.98904 1.69814 1.33579 1.38471 1.19928 0.85040 0.79312 0.77021 0.78164 1.19068 1.22170 1.21366 1.21471 0.77348 0.86529 0.86599 1.90780 1.46899 1.20265 1.87685 1.22205 0.95192 0.98803 0.83811 0.82037 1.22839 0.92420 1.00964 0.85307 1.47304 1.05572 1.59850 1.24837 1.21652 0.83411 1.02581 0.95185 1.16169 0.82711 0.79030 0.82908 1.90908 1.83027 1.48398 1.29384 1.44964 1.09480 1.61297 1.22109 0.91140 0.88418 0.93522 0.86780 0.89395 0.88396 0.92695 0.94708 0.98462 0.79290 0.93803 0.83402 0.89243 0.91567 0.88510 0.90703 0.72578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 10.18 71.98 0.73 -0.47 16 2 C 0.09 0.94 5.89 86.38 0.51 1.44 16 3 N -0.59 -13.11 2.47 -821.82 -2.03 -15.14 16 4 C 0.12 3.89 5.52 86.38 0.48 4.37 16 5 C 0.15 6.03 6.58 86.38 0.57 6.60 16 6 N -0.74 -38.76 5.60 -343.46 -1.92 -40.68 16 7 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 9 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 10 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 11 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 14 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 15 C 0.49 12.55 6.79 87.66 0.59 13.15 16 16 O -0.58 -22.17 16.16 -3.05 -0.05 -22.22 16 17 C 0.11 1.71 3.32 44.51 0.15 1.86 16 18 H 0.16 1.07 6.40 -2.38 -0.02 1.06 16 19 C 0.11 1.15 5.57 86.58 0.48 1.64 16 20 N -0.64 -11.57 3.36 -862.57 -2.90 -14.47 16 21 C 0.11 1.41 11.22 127.77 1.43 2.84 16 22 C 0.69 18.78 8.61 179.57 1.55 20.33 16 23 O -0.64 -23.09 17.29 -4.00 -0.07 -23.16 16 24 N -0.72 -16.54 5.62 -460.32 -2.59 -19.13 16 25 H 0.07 0.33 4.66 -2.38 -0.01 0.32 16 26 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.11 0.43 5.98 -2.39 -0.01 0.42 16 29 H 0.09 1.05 8.07 -2.39 -0.02 1.03 16 30 H 0.10 2.73 8.07 -2.39 -0.02 2.71 16 31 H 0.05 2.08 7.42 -2.39 -0.02 2.07 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.38 20.53 7.67 -92.70 -0.71 19.82 16 35 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.15 0.14 7.91 -2.39 -0.02 0.12 16 37 H 0.09 1.01 6.61 -2.39 -0.02 1.00 16 38 H 0.07 1.13 7.52 -2.39 -0.02 1.11 16 39 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.43 10.04 8.96 -92.71 -0.83 9.21 16 Total: -1.00 -88.23 337.87 0.06 -88.16 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -0.48 Total: 22.91 kcal Atomic # 6 Polarization: 26.77 SS G_CDS: 7.80 Total: 34.56 kcal Atomic # 7 Polarization: -139.68 SS G_CDS: -9.16 Total: -148.84 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.12 Total: -45.38 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -88.23 0.06 -88.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668517350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.071 kcal (2) G-P(sol) polarization free energy of solvation -88.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds