Wall clock time and date at job start Tue Mar 31 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46880 * 2 1 4 4 C 1.52996 * 109.46777 * 239.99658 * 2 1 3 5 5 N 1.46504 * 109.46681 * 184.99698 * 4 2 1 6 6 C 1.36943 * 119.99781 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99788 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99622 * 180.27904 * 6 5 4 9 9 N 1.31622 * 119.99400 * 179.72313 * 8 6 5 10 10 Si 1.86800 * 120.00144 * 359.72086 * 8 6 5 11 11 H 1.48506 * 109.46719 * 90.00417 * 10 8 6 12 12 H 1.48501 * 109.46793 * 210.00071 * 10 8 6 13 13 H 1.48489 * 109.47333 * 330.00315 * 10 8 6 14 14 N 1.46503 * 109.46765 * 119.99788 * 2 1 3 15 15 C 1.34776 * 119.99943 * 274.99458 * 14 2 1 16 16 O 1.21285 * 119.99975 * 0.02562 * 15 14 2 17 17 C 1.50701 * 119.99865 * 180.02562 * 15 14 2 18 18 H 1.09003 * 109.87311 * 40.70273 * 17 15 14 19 19 C 1.54329 * 109.88067 * 279.68869 * 17 15 14 20 20 C 1.55403 * 102.82563 * 218.48481 * 19 17 15 21 21 C 1.54904 * 101.66734 * 35.33469 * 20 19 17 22 22 N 1.47022 * 109.88255 * 161.72196 * 17 15 14 23 23 C 1.34778 * 125.64370 * 298.32229 * 22 17 15 24 24 N 1.34781 * 119.99626 * 180.02562 * 23 22 17 25 25 O 1.21588 * 120.00282 * 0.02562 * 23 22 17 26 26 H 1.09002 * 109.47364 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47292 * 299.99939 * 1 2 3 28 28 H 1.09000 * 109.47257 * 60.00020 * 1 2 3 29 29 H 1.09006 * 109.47179 * 65.00314 * 4 2 1 30 30 H 1.08997 * 109.47540 * 304.99777 * 4 2 1 31 31 H 0.97000 * 120.00410 * 0.02562 * 5 4 2 32 32 H 0.97009 * 119.99492 * 179.97438 * 9 8 6 33 33 H 0.97000 * 119.99835 * 95.00295 * 14 2 1 34 34 H 1.08998 * 110.71967 * 336.75282 * 19 17 15 35 35 H 1.08990 * 110.71981 * 100.02782 * 19 17 15 36 36 H 1.09004 * 110.88789 * 277.26773 * 20 19 17 37 37 H 1.08997 * 111.07225 * 153.48576 * 20 19 17 38 38 H 1.09006 * 110.36842 * 204.23525 * 21 20 19 39 39 H 1.09006 * 110.46083 * 81.96369 * 21 20 19 40 40 H 0.96998 * 120.00274 * 359.97438 * 24 23 22 41 41 H 0.97005 * 119.99574 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1838 -1.4380 -2.2072 7 1 3.6467 -1.8432 -3.0520 8 6 5.5668 -1.5427 -2.1488 9 7 6.2235 -2.1354 -3.1234 10 14 6.4956 -0.8423 -0.6872 11 1 6.6209 -1.8833 0.3645 12 1 7.8489 -0.4116 -1.1211 13 1 5.7555 0.3244 -0.1432 14 7 2.0183 -0.6906 1.1962 15 6 2.1470 -0.0182 2.3572 16 8 1.8583 1.1585 2.4116 17 6 2.6498 -0.7284 3.5875 18 1 3.4652 -1.4006 3.3201 19 6 1.5016 -1.5288 4.2376 20 6 1.7593 -1.3297 5.7571 21 6 2.2975 0.1223 5.7959 22 7 3.1159 0.2543 4.5768 23 6 4.1247 1.1301 4.3988 24 7 4.4581 1.9838 5.3871 25 8 4.7339 1.1502 3.3468 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.7516 -0.1584 -2.1370 30 1 1.6053 -1.7199 -1.2951 31 1 3.9824 -0.4627 -0.4316 32 1 7.1900 -2.2082 -3.0828 33 1 2.2490 -1.6318 1.1527 34 1 0.5340 -1.1150 3.9535 35 1 1.5655 -2.5829 3.9680 36 1 2.5083 -2.0338 6.1198 37 1 0.8342 -1.4188 6.3265 38 1 2.9115 0.2758 6.6834 39 1 1.4729 0.8350 5.7782 40 1 3.9718 1.9681 6.2262 41 1 5.1839 2.6145 5.2588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669485670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:43 Heat of formation + Delta-G solvation = -46.514735 kcal Electronic energy + Delta-G solvation = -23647.402726 eV Core-core repulsion = 20176.866664 eV Total energy + Delta-G solvation = -3470.536062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74644 -39.03001 -37.38685 -36.06591 -33.76856 -33.63266 -31.62396 -31.30656 -30.50922 -29.10655 -25.90939 -24.42884 -22.47145 -21.88128 -21.46397 -20.33511 -19.63004 -18.47330 -17.69965 -17.39332 -16.78163 -15.83356 -15.62745 -14.93902 -14.71991 -14.59697 -14.52410 -13.93583 -13.47924 -13.43263 -13.29701 -12.77815 -12.64857 -12.55245 -12.32060 -12.28110 -11.80329 -11.77857 -11.67334 -11.23236 -10.99924 -10.76568 -10.41755 -10.22406 -10.00718 -9.74922 -9.70147 -9.53053 -8.85880 -8.75873 -8.65181 -7.18501 -5.71497 -3.07341 2.46755 2.90292 3.20230 3.48691 3.53315 3.57272 3.67312 4.05928 4.16293 4.34322 4.59054 4.68932 4.84790 4.93809 5.10222 5.15936 5.27122 5.37961 5.40174 5.48495 5.55129 5.57313 5.63448 5.76919 5.90403 5.96314 5.97855 6.11021 6.32570 6.45418 6.65881 6.67324 6.85694 6.91298 7.79321 7.82944 8.03846 8.46921 8.50070 8.63818 9.27001 9.99999 10.19338 11.46236 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.005877 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.815266 B = 4763.229965 C = 5748.195313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 H 0.085 0.915 4 C 0.150 3.850 5 N -0.756 5.756 6 C -0.247 4.247 7 H 0.090 0.910 8 C 0.008 3.992 9 N -0.934 5.934 10 Si 0.880 3.120 11 H -0.285 1.285 12 H -0.292 1.292 13 H -0.271 1.271 14 N -0.713 5.713 15 C 0.510 3.490 16 O -0.534 6.534 17 C 0.134 3.866 18 H 0.098 0.902 19 C -0.119 4.119 20 C -0.129 4.129 21 C 0.100 3.900 22 N -0.617 5.617 23 C 0.726 3.274 24 N -0.865 5.865 25 O -0.573 6.573 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.365 0.635 32 H 0.259 0.741 33 H 0.403 0.597 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.393 0.607 41 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.660 1.993 22.972 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.026 3.974 3 H 0.103 0.897 4 C 0.022 3.978 5 N -0.402 5.402 6 C -0.376 4.376 7 H 0.108 0.892 8 C -0.188 4.188 9 N -0.582 5.582 10 Si 0.710 3.290 11 H -0.212 1.212 12 H -0.218 1.218 13 H -0.197 1.197 14 N -0.365 5.365 15 C 0.294 3.706 16 O -0.410 6.410 17 C 0.026 3.974 18 H 0.116 0.884 19 C -0.158 4.158 20 C -0.167 4.167 21 C -0.023 4.023 22 N -0.357 5.357 23 C 0.426 3.574 24 N -0.434 5.434 25 O -0.449 6.449 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.199 0.801 32 H 0.069 0.931 33 H 0.237 0.763 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.221 0.779 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -12.426 2.695 21.988 25.400 hybrid contribution 1.045 0.365 1.277 1.690 sum -11.380 3.060 23.265 26.079 Atomic orbital electron populations 1.22073 0.95268 1.01904 1.02114 1.21287 0.93568 0.98035 0.84535 0.89671 1.20946 0.85639 0.97469 0.93726 1.42753 1.01271 1.71287 1.24887 1.19034 0.89931 1.29333 0.99320 0.89183 1.24639 0.96184 1.00346 0.97618 1.69716 1.07351 1.48376 1.32721 0.86612 0.79789 0.79688 0.82910 1.21154 1.21800 1.19705 1.45992 1.66918 1.14321 1.09249 1.20690 0.77645 0.87563 0.84676 1.90655 1.49778 1.15585 1.84955 1.21366 0.97998 0.89938 0.88126 0.88369 1.22658 0.97332 1.00627 0.95160 1.22799 1.02111 0.95763 0.96015 1.22301 0.94921 0.97719 0.87340 1.47147 1.34583 1.38149 1.15775 1.15395 0.79556 0.78715 0.83744 1.42903 1.41625 1.41320 1.17551 1.91074 1.55117 1.72442 1.26226 0.92417 0.92597 0.91571 0.94181 0.94972 0.80128 0.93109 0.76279 0.89859 0.88635 0.90052 0.89318 0.90712 0.91212 0.77903 0.75317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.48 37.16 0.35 -1.73 16 2 C 0.13 2.23 2.73 -67.93 -0.19 2.05 16 3 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 4 C 0.15 2.94 5.82 -4.04 -0.02 2.92 16 5 N -0.76 -18.85 5.24 -59.91 -0.31 -19.16 16 6 C -0.25 -7.21 10.47 -15.06 -0.16 -7.37 16 7 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 8 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 9 N -0.93 -30.24 13.97 55.49 0.78 -29.47 16 10 Si 0.88 24.29 27.73 -169.99 -4.71 19.57 16 11 H -0.28 -7.71 7.11 56.52 0.40 -7.31 16 12 H -0.29 -8.09 7.11 56.52 0.40 -7.69 16 13 H -0.27 -7.66 6.52 56.52 0.37 -7.29 16 14 N -0.71 -11.55 4.52 -53.80 -0.24 -11.79 16 15 C 0.51 8.61 6.24 -10.98 -0.07 8.54 16 16 O -0.53 -10.84 15.79 5.55 0.09 -10.75 16 17 C 0.13 1.77 3.25 -68.10 -0.22 1.55 16 18 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 19 C -0.12 -0.97 6.49 -24.76 -0.16 -1.13 16 20 C -0.13 -0.76 7.09 -24.45 -0.17 -0.94 16 21 C 0.10 0.78 6.58 -2.54 -0.02 0.76 16 22 N -0.62 -8.00 2.75 -170.00 -0.47 -8.46 16 23 C 0.73 11.55 8.16 -86.91 -0.71 10.84 16 24 N -0.87 -9.03 8.83 27.64 0.24 -8.79 16 25 O -0.57 -12.60 16.98 5.29 0.09 -12.51 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.37 9.45 5.20 -40.82 -0.21 9.23 16 32 H 0.26 8.01 8.31 -40.82 -0.34 7.68 16 33 H 0.40 5.93 8.60 -40.82 -0.35 5.58 16 34 H 0.08 0.70 7.84 -51.93 -0.41 0.29 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.39 7.30 -51.93 -0.38 0.01 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.39 2.63 7.31 -40.82 -0.30 2.34 16 41 H 0.41 3.94 8.93 -40.82 -0.36 3.58 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -40.72 338.91 -7.12 -47.84 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -6.22 Total: 12.78 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: -1.46 Total: 15.64 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -0.01 Total: -77.67 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.18 Total: -23.26 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.71 Total: 19.57 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -40.72 -7.12 -47.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669485670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.320 kcal (2) G-P(sol) polarization free energy of solvation -40.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds