Wall clock time and date at job start Tue Mar 31 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46880 * 2 1 4 4 C 1.52996 * 109.46777 * 239.99658 * 2 1 3 5 5 N 1.46504 * 109.46681 * 184.99698 * 4 2 1 6 6 C 1.36943 * 119.99781 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99788 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99622 * 180.27904 * 6 5 4 9 9 N 1.31622 * 119.99400 * 179.72313 * 8 6 5 10 10 Si 1.86800 * 120.00144 * 359.72086 * 8 6 5 11 11 H 1.48506 * 109.46719 * 90.00417 * 10 8 6 12 12 H 1.48501 * 109.46793 * 210.00071 * 10 8 6 13 13 H 1.48489 * 109.47333 * 330.00315 * 10 8 6 14 14 N 1.46503 * 109.46765 * 119.99788 * 2 1 3 15 15 C 1.34776 * 119.99943 * 274.99458 * 14 2 1 16 16 O 1.21285 * 119.99975 * 0.02562 * 15 14 2 17 17 C 1.50701 * 119.99865 * 180.02562 * 15 14 2 18 18 H 1.09003 * 109.87311 * 40.70273 * 17 15 14 19 19 C 1.54329 * 109.88067 * 279.68869 * 17 15 14 20 20 C 1.55403 * 102.82563 * 218.48481 * 19 17 15 21 21 C 1.54904 * 101.66734 * 35.33469 * 20 19 17 22 22 N 1.47022 * 109.88255 * 161.72196 * 17 15 14 23 23 C 1.34778 * 125.64370 * 298.32229 * 22 17 15 24 24 N 1.34781 * 119.99626 * 180.02562 * 23 22 17 25 25 O 1.21588 * 120.00282 * 0.02562 * 23 22 17 26 26 H 1.09002 * 109.47364 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47292 * 299.99939 * 1 2 3 28 28 H 1.09000 * 109.47257 * 60.00020 * 1 2 3 29 29 H 1.09006 * 109.47179 * 65.00314 * 4 2 1 30 30 H 1.08997 * 109.47540 * 304.99777 * 4 2 1 31 31 H 0.97000 * 120.00410 * 0.02562 * 5 4 2 32 32 H 0.97009 * 119.99492 * 179.97438 * 9 8 6 33 33 H 0.97000 * 119.99835 * 95.00295 * 14 2 1 34 34 H 1.08998 * 110.71967 * 336.75282 * 19 17 15 35 35 H 1.08990 * 110.71981 * 100.02782 * 19 17 15 36 36 H 1.09004 * 110.88789 * 277.26773 * 20 19 17 37 37 H 1.08997 * 111.07225 * 153.48576 * 20 19 17 38 38 H 1.09006 * 110.36842 * 204.23525 * 21 20 19 39 39 H 1.09006 * 110.46083 * 81.96369 * 21 20 19 40 40 H 0.96998 * 120.00274 * 359.97438 * 24 23 22 41 41 H 0.97005 * 119.99574 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1838 -1.4380 -2.2072 7 1 3.6467 -1.8432 -3.0520 8 6 5.5668 -1.5427 -2.1488 9 7 6.2235 -2.1354 -3.1234 10 14 6.4956 -0.8423 -0.6872 11 1 6.6209 -1.8833 0.3645 12 1 7.8489 -0.4116 -1.1211 13 1 5.7555 0.3244 -0.1432 14 7 2.0183 -0.6906 1.1962 15 6 2.1470 -0.0182 2.3572 16 8 1.8583 1.1585 2.4116 17 6 2.6498 -0.7284 3.5875 18 1 3.4652 -1.4006 3.3201 19 6 1.5016 -1.5288 4.2376 20 6 1.7593 -1.3297 5.7571 21 6 2.2975 0.1223 5.7959 22 7 3.1159 0.2543 4.5768 23 6 4.1247 1.1301 4.3988 24 7 4.4581 1.9838 5.3871 25 8 4.7339 1.1502 3.3468 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.7516 -0.1584 -2.1370 30 1 1.6053 -1.7199 -1.2951 31 1 3.9824 -0.4627 -0.4316 32 1 7.1900 -2.2082 -3.0828 33 1 2.2490 -1.6318 1.1527 34 1 0.5340 -1.1150 3.9535 35 1 1.5655 -2.5829 3.9680 36 1 2.5083 -2.0338 6.1198 37 1 0.8342 -1.4188 6.3265 38 1 2.9115 0.2758 6.6834 39 1 1.4729 0.8350 5.7782 40 1 3.9718 1.9681 6.2262 41 1 5.1839 2.6145 5.2588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669485670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:43 Heat of formation + Delta-G solvation = -81.358292 kcal Electronic energy + Delta-G solvation = -23648.913656 eV Core-core repulsion = 20176.866664 eV Total energy + Delta-G solvation = -3472.046992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -41.82372 -40.31371 -38.45329 -37.58980 -35.54228 -34.85971 -33.41322 -32.22496 -32.03329 -30.03113 -27.65871 -25.34356 -24.19290 -23.19898 -22.33355 -21.69610 -20.78805 -19.85977 -19.31104 -18.62705 -17.81659 -17.21014 -16.76424 -16.56177 -16.03184 -15.96897 -15.75107 -15.53065 -14.87879 -14.70683 -14.33203 -14.21933 -14.00697 -13.90135 -13.70254 -13.41500 -13.25196 -12.96008 -12.76800 -12.56609 -12.29662 -12.20698 -11.93925 -11.83640 -11.78875 -11.51800 -11.10295 -10.93931 -10.78970 -10.10617 -9.68787 -9.35791 -8.09882 -5.40928 1.27076 1.32166 1.43016 1.43225 1.72267 2.04220 2.33209 2.38648 3.22770 3.28730 3.47182 3.56197 3.58571 3.78016 3.92384 4.08384 4.17731 4.24177 4.39129 4.50948 4.66273 4.78033 4.79560 4.83384 4.87669 4.89818 5.04819 5.08460 5.17860 5.27682 5.30745 5.53607 5.71169 5.83484 5.90868 6.15410 6.53920 6.87630 7.00663 7.22686 7.56526 7.77791 7.94598 9.11453 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.005877 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.815266 B = 4763.229965 C = 5748.195313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.137 3.863 3 H 0.050 0.950 4 C 0.148 3.852 5 N -0.761 5.761 6 C -0.227 4.227 7 H 0.072 0.928 8 C -0.047 4.047 9 N -0.974 5.974 10 Si 0.941 3.059 11 H -0.275 1.275 12 H -0.293 1.293 13 H -0.286 1.286 14 N -0.711 5.711 15 C 0.504 3.496 16 O -0.575 6.575 17 C 0.127 3.873 18 H 0.088 0.912 19 C -0.111 4.111 20 C -0.116 4.116 21 C 0.090 3.910 22 N -0.619 5.619 23 C 0.712 3.288 24 N -0.842 5.842 25 O -0.646 6.646 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.410 0.590 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.414 0.586 41 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.550 1.171 25.847 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.032 3.968 3 H 0.068 0.932 4 C 0.022 3.978 5 N -0.406 5.406 6 C -0.358 4.358 7 H 0.090 0.910 8 C -0.239 4.239 9 N -0.625 5.625 10 Si 0.771 3.229 11 H -0.201 1.201 12 H -0.220 1.220 13 H -0.213 1.213 14 N -0.363 5.363 15 C 0.290 3.710 16 O -0.454 6.454 17 C 0.018 3.982 18 H 0.106 0.894 19 C -0.149 4.149 20 C -0.154 4.154 21 C -0.031 4.031 22 N -0.357 5.357 23 C 0.412 3.588 24 N -0.412 5.412 25 O -0.528 6.528 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.193 0.807 32 H 0.068 0.932 33 H 0.246 0.754 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.122 0.878 39 H 0.090 0.910 40 H 0.245 0.755 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -14.391 1.858 24.957 28.869 hybrid contribution 1.530 0.661 0.374 1.708 sum -12.861 2.519 25.331 28.520 Atomic orbital electron populations 1.21960 0.91878 1.03550 1.02598 1.21123 0.96009 0.95735 0.83914 0.93164 1.21165 0.82592 0.98877 0.95197 1.42839 1.03474 1.70725 1.23606 1.19098 0.89979 1.27484 0.99206 0.90977 1.25189 0.97204 1.01763 0.99777 1.69825 1.07542 1.50607 1.34566 0.85655 0.78251 0.78548 0.80447 1.20140 1.22001 1.21277 1.45998 1.66741 1.14621 1.08947 1.21440 0.76673 0.87233 0.85683 1.90622 1.51706 1.17370 1.85707 1.21596 0.99397 0.89902 0.87309 0.89386 1.22737 0.94958 1.00860 0.96366 1.22850 1.03753 0.94311 0.94440 1.22690 0.94896 0.99371 0.86105 1.47309 1.33993 1.37098 1.17333 1.15833 0.79858 0.79539 0.83601 1.42659 1.41406 1.39838 1.17275 1.91010 1.57804 1.74668 1.29307 0.90114 0.92844 0.90367 0.93916 0.92792 0.80713 0.93220 0.75382 0.89891 0.86352 0.88942 0.86266 0.87813 0.90975 0.75481 0.74792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.48 71.98 0.68 -2.84 16 2 C 0.14 4.64 2.73 44.99 0.12 4.76 16 3 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 4 C 0.15 5.67 5.82 86.38 0.50 6.17 16 5 N -0.76 -37.91 5.24 -343.44 -1.80 -39.71 16 6 C -0.23 -13.33 10.47 84.03 0.88 -12.45 16 7 H 0.07 4.47 8.06 -2.91 -0.02 4.45 16 8 C -0.05 -2.90 5.50 84.86 0.47 -2.44 16 9 N -0.97 -63.98 13.97 21.65 0.30 -63.68 16 10 Si 0.94 51.58 27.73 68.60 1.90 53.49 16 11 H -0.28 -14.51 7.11 99.48 0.71 -13.80 16 12 H -0.29 -16.04 7.11 99.48 0.71 -15.33 16 13 H -0.29 -16.25 6.52 99.48 0.65 -15.60 16 14 N -0.71 -22.67 4.52 -442.52 -2.00 -24.67 16 15 C 0.50 16.96 6.24 87.66 0.55 17.50 16 16 O -0.58 -23.77 15.79 -3.05 -0.05 -23.82 16 17 C 0.13 3.21 3.25 44.60 0.14 3.35 16 18 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 19 C -0.11 -1.46 6.49 31.87 0.21 -1.26 16 20 C -0.12 -0.87 7.09 32.07 0.23 -0.65 16 21 C 0.09 1.11 6.58 86.85 0.57 1.68 16 22 N -0.62 -15.29 2.75 -810.02 -2.23 -17.52 16 23 C 0.71 22.59 8.16 179.05 1.46 24.05 16 24 N -0.84 -16.67 8.83 -184.74 -1.63 -18.30 16 25 O -0.65 -29.39 16.98 -3.99 -0.07 -29.46 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.36 18.76 5.20 -92.71 -0.48 18.28 16 32 H 0.26 16.25 8.31 -92.70 -0.77 15.48 16 33 H 0.41 11.66 8.60 -92.71 -0.80 10.86 16 34 H 0.08 1.13 7.84 -2.39 -0.02 1.12 16 35 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.10 0.67 7.30 -2.38 -0.02 0.65 16 39 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.41 4.57 7.31 -92.71 -0.68 3.90 16 41 H 0.42 7.70 8.93 -92.70 -0.83 6.88 16 Total: -1.00 -92.05 338.91 -1.52 -93.58 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -1.76 Total: 32.20 kcal Atomic # 6 Polarization: 32.08 SS G_CDS: 5.81 Total: 37.89 kcal Atomic # 7 Polarization: -156.52 SS G_CDS: -7.36 Total: -163.87 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.12 Total: -53.28 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 1.90 Total: 53.49 kcal Total: -92.05 -1.52 -93.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669485670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.219 kcal (2) G-P(sol) polarization free energy of solvation -92.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds