Wall clock time and date at job start Tue Mar 31 2020 03:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99638 * 2 1 4 4 C 1.52994 * 109.47175 * 270.00502 * 3 2 1 5 5 C 1.52997 * 109.47070 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47115 * 179.97438 * 5 4 3 7 7 C 1.36937 * 119.99785 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00188 * 0.02562 * 7 6 5 9 9 C 1.38817 * 120.00037 * 179.97438 * 7 6 5 10 10 N 1.31625 * 119.99744 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00148 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47127 * 90.00217 * 11 9 7 13 13 H 1.48496 * 109.47021 * 210.00193 * 11 9 7 14 14 H 1.48501 * 109.47156 * 330.00153 * 11 9 7 15 15 C 1.34773 * 119.99913 * 180.02562 * 2 1 3 16 16 O 1.21282 * 119.99728 * 179.97438 * 15 2 1 17 17 C 1.50702 * 120.00170 * 359.97438 * 15 2 1 18 18 H 1.09003 * 110.60357 * 321.33515 * 17 15 2 19 19 C 1.54104 * 110.54329 * 84.10901 * 17 15 2 20 20 N 1.47058 * 103.85982 * 118.59804 * 19 17 15 21 21 C 1.46507 * 125.40801 * 179.97438 * 20 19 17 22 22 C 1.33951 * 109.17833 * 359.72893 * 20 19 17 23 23 O 1.21582 * 123.03838 * 180.26156 * 22 20 19 24 24 N 1.33945 * 113.91634 * 0.47971 * 22 20 19 25 25 H 1.09008 * 109.46719 * 269.99898 * 1 2 3 26 26 H 1.09000 * 109.47733 * 29.99108 * 1 2 3 27 27 H 1.08991 * 109.47329 * 150.00037 * 1 2 3 28 28 H 1.08995 * 109.47072 * 30.00564 * 3 2 1 29 29 H 1.09000 * 109.46593 * 150.00430 * 3 2 1 30 30 H 1.09005 * 109.47043 * 300.00072 * 4 3 2 31 31 H 1.08997 * 109.47531 * 59.99921 * 4 3 2 32 32 H 1.08993 * 109.47338 * 299.99804 * 5 4 3 33 33 H 1.09004 * 109.47313 * 60.00070 * 5 4 3 34 34 H 0.96999 * 119.99965 * 359.97438 * 6 5 4 35 35 H 0.96998 * 120.00079 * 179.97438 * 10 9 7 36 36 H 1.09004 * 110.54877 * 237.18874 * 19 17 15 37 37 H 1.08994 * 110.55145 * 359.85984 * 19 17 15 38 38 H 1.09000 * 109.46852 * 89.99833 * 21 20 19 39 39 H 1.08996 * 109.46933 * 209.99605 * 21 20 19 40 40 H 1.08996 * 109.46895 * 329.99690 * 21 20 19 41 41 H 0.97001 * 125.41290 * 179.79582 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4523 1.7106 -1.4424 5 6 3.2178 3.0353 -1.4424 6 7 3.4624 3.4580 -2.8237 7 6 4.1355 4.6239 -3.0738 8 1 4.4865 5.2317 -2.2529 9 6 4.3678 5.0243 -4.3825 10 7 3.9405 4.2833 -5.3830 11 14 5.2867 6.6143 -4.7238 12 1 6.7425 6.3353 -4.8134 13 1 4.8138 7.1937 -6.0067 14 1 5.0342 7.5781 -3.6226 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1671 -0.0010 17 6 1.3854 -2.4723 -0.0005 18 1 0.5039 -2.4063 0.6373 19 6 0.9862 -2.8663 -1.4359 20 7 1.6762 -4.1463 -1.6547 21 6 1.6172 -4.9434 -2.8825 22 6 2.3715 -4.4650 -0.5550 23 8 3.0416 -5.4754 -0.4640 24 7 2.2580 -3.5721 0.4370 25 1 -0.3633 0.0000 1.0278 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.0414 0.9509 -1.9564 31 1 1.4999 1.8409 -1.9562 32 1 2.6291 3.7951 -0.9284 33 1 4.1703 2.9046 -0.9288 34 1 3.1475 2.9120 -3.5609 35 1 4.1024 4.5632 -6.2975 36 1 -0.0935 -2.9960 -1.5108 37 1 1.3308 -2.1167 -2.1482 38 1 2.4204 -4.6377 -3.5530 39 1 1.7317 -5.9990 -2.6362 40 1 0.6559 -4.7866 -3.3716 41 1 2.6867 -3.6383 1.3046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670204750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:03 Heat of formation + Delta-G solvation = -26.185345 kcal Electronic energy + Delta-G solvation = -22521.375796 eV Core-core repulsion = 19051.721283 eV Total energy + Delta-G solvation = -3469.654513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66528 -39.65840 -36.59942 -36.20803 -34.90287 -34.36754 -32.37284 -30.37696 -29.30785 -27.53504 -27.11763 -25.45971 -23.87889 -22.60966 -21.04171 -20.81039 -19.64476 -18.06441 -17.77392 -17.06520 -16.71386 -16.25661 -15.64625 -15.47889 -14.68061 -14.57720 -14.50926 -14.25611 -13.89830 -13.72980 -13.55439 -13.26190 -13.08912 -12.79984 -12.71123 -12.60588 -12.34595 -11.98290 -11.92926 -10.96727 -10.85870 -10.78737 -10.51798 -10.45831 -10.32787 -10.07126 -9.73333 -9.46590 -8.89522 -8.86991 -8.84155 -6.92137 -5.76205 -3.05004 2.09616 2.38872 2.60138 3.00267 3.44293 3.49101 3.50740 3.55593 3.89606 4.04660 4.37423 4.59811 4.63224 4.74537 4.90978 5.02564 5.04637 5.15763 5.26399 5.32869 5.37014 5.46549 5.56048 5.59755 5.62589 5.82588 6.00873 6.24961 6.34392 6.34830 6.39429 6.79201 6.82156 6.84688 7.09882 7.18150 7.70164 7.89417 8.34009 8.42745 9.53676 10.11679 10.46182 11.46875 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.003122 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.817375 B = 8966.066463 C = 9516.550230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.611 5.611 3 C 0.118 3.882 4 C -0.139 4.139 5 C 0.156 3.844 6 N -0.733 5.733 7 C -0.240 4.240 8 H 0.071 0.929 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.499 3.501 16 O -0.513 6.513 17 C 0.105 3.895 18 H 0.115 0.885 19 C 0.105 3.895 20 N -0.636 5.636 21 C 0.121 3.879 22 C 0.705 3.295 23 O -0.582 6.582 24 N -0.716 5.716 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.388 -15.164 11.612 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.345 5.345 3 C -0.004 4.004 4 C -0.178 4.178 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.089 0.911 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C 0.283 3.717 16 O -0.387 6.387 17 C -0.005 4.005 18 H 0.133 0.867 19 C -0.019 4.019 20 N -0.376 5.376 21 C -0.021 4.021 22 C 0.406 3.594 23 O -0.460 6.460 24 N -0.378 5.378 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -13.318 -15.630 11.521 23.546 hybrid contribution 0.422 0.997 -0.213 1.104 sum -12.896 -14.633 11.308 22.545 Atomic orbital electron populations 1.21910 0.79360 1.03766 1.02084 1.47918 1.07124 1.06200 1.73234 1.21549 0.97555 0.83120 0.98182 1.22054 1.01117 0.99068 0.95539 1.20537 0.96051 0.91823 0.88788 1.42344 1.68364 1.25991 1.01052 1.19248 1.27863 0.98157 0.91828 0.91141 1.24755 1.01682 0.99092 0.95550 1.69665 1.51516 1.38970 0.98162 0.86168 0.79565 0.83057 0.77282 1.21682 1.21757 1.20741 1.20734 0.88404 0.85142 0.77426 1.90793 1.13455 1.86776 1.47668 1.21876 0.94175 0.87108 0.97387 0.86728 1.22287 0.98642 0.86963 0.94009 1.47000 1.51822 1.23471 1.15280 1.21427 1.02025 0.95403 0.83227 1.15789 0.79879 0.83152 0.80599 1.90963 1.45311 1.27579 1.82112 1.44845 1.53830 1.21625 1.17475 0.92142 0.90005 0.91261 0.90148 0.89691 0.91660 0.91869 0.96344 0.96237 0.78344 0.93523 0.88718 0.89294 0.92358 0.90289 0.90697 0.72427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 9.92 59.85 0.59 0.97 16 2 N -0.61 -5.97 2.87 -181.57 -0.52 -6.49 16 3 C 0.12 1.44 5.41 -4.04 -0.02 1.42 16 4 C -0.14 -2.20 5.65 -26.74 -0.15 -2.35 16 5 C 0.16 3.15 6.26 -4.04 -0.03 3.13 16 6 N -0.73 -19.05 5.60 -59.91 -0.34 -19.38 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 11 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.50 5.77 6.78 -10.99 -0.07 5.70 16 16 O -0.51 -8.58 16.18 5.56 0.09 -8.49 16 17 C 0.11 0.86 3.17 -68.20 -0.22 0.64 16 18 H 0.12 0.50 7.20 -51.93 -0.37 0.13 16 19 C 0.11 0.79 6.44 -3.16 -0.02 0.77 16 20 N -0.64 -6.63 3.36 -186.73 -0.63 -7.26 16 21 C 0.12 0.98 11.02 59.85 0.66 1.63 16 22 C 0.71 9.50 8.60 -88.40 -0.76 8.73 16 23 O -0.58 -10.12 17.54 5.29 0.09 -10.03 16 24 N -0.72 -7.70 5.63 -59.33 -0.33 -8.04 16 25 H 0.06 0.22 8.14 -51.92 -0.42 -0.20 16 26 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 27 H 0.07 0.21 5.94 -51.93 -0.31 -0.10 16 28 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.08 1.19 7.42 -51.93 -0.39 0.80 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.09 0.36 8.11 -51.93 -0.42 -0.06 16 37 H 0.09 0.75 7.72 -51.93 -0.40 0.35 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.43 4.22 8.96 -40.82 -0.37 3.86 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -38.90 344.08 -7.34 -46.23 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.32 Total: 5.45 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -0.26 Total: 13.10 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -1.09 Total: -69.07 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.18 Total: -18.52 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -38.90 -7.34 -46.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670204750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.046 kcal (2) G-P(sol) polarization free energy of solvation -38.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds