Wall clock time and date at job start Tue Mar 31 2020 03:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47135 * 2 1 4 4 N 1.46508 * 109.46882 * 240.00639 * 2 1 3 5 5 C 1.34778 * 119.99783 * 85.00302 * 4 2 1 6 6 N 1.34781 * 119.99718 * 179.97438 * 5 4 2 7 7 O 1.21587 * 120.00151 * 359.97438 * 5 4 2 8 8 C 1.50694 * 109.47143 * 120.00581 * 2 1 3 9 9 O 1.21287 * 119.99762 * 93.38832 * 8 2 1 10 10 N 1.34770 * 120.00392 * 273.38851 * 8 2 1 11 11 C 1.47031 * 125.64498 * 354.82234 * 10 8 2 12 12 C 1.54318 * 107.27236 * 181.09376 * 11 10 8 13 13 C 1.55163 * 102.94024 * 22.19209 * 12 11 10 14 14 H 1.09008 * 111.00383 * 82.57530 * 13 12 11 15 15 C 1.53006 * 111.00272 * 206.38301 * 13 12 11 16 16 N 1.46495 * 109.47102 * 290.42010 * 15 13 12 17 17 C 1.36936 * 119.99665 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00183 * 359.97438 * 17 16 15 19 19 C 1.38821 * 120.00188 * 180.02562 * 17 16 15 20 20 N 1.31616 * 120.00228 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99584 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47307 * 89.99786 * 21 19 17 23 23 H 1.48504 * 109.46961 * 210.00191 * 21 19 17 24 24 H 1.48504 * 109.47195 * 329.99974 * 21 19 17 25 25 C 1.47520 * 125.64190 * 174.86364 * 10 8 2 26 26 H 1.09007 * 109.47156 * 54.75711 * 1 2 3 27 27 H 1.09004 * 109.47130 * 174.75357 * 1 2 3 28 28 H 1.08993 * 109.47520 * 294.75705 * 1 2 3 29 29 H 0.96997 * 119.99500 * 264.99648 * 4 2 1 30 30 H 0.97000 * 119.99507 * 0.02562 * 6 5 4 31 31 H 0.96992 * 119.99867 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.88150 * 61.67505 * 11 10 8 33 33 H 1.09000 * 110.00867 * 300.58554 * 11 10 8 34 34 H 1.08994 * 110.72224 * 263.83268 * 12 11 10 35 35 H 1.09000 * 110.87394 * 140.62506 * 12 11 10 36 36 H 1.08992 * 109.46638 * 50.42130 * 15 13 12 37 37 H 1.08998 * 109.46955 * 170.41932 * 15 13 12 38 38 H 0.97001 * 120.00549 * 359.97438 * 16 15 13 39 39 H 0.97000 * 119.99629 * 180.02562 * 20 19 17 40 40 H 1.09008 * 110.41213 * 37.01289 * 25 10 8 41 41 H 1.08997 * 110.37758 * 274.65650 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 7 2.5968 -0.6531 -3.4576 7 8 1.8575 1.1617 -2.4117 8 6 2.0323 -0.7105 1.2303 9 8 2.2930 -1.8941 1.1831 10 7 2.1919 -0.0308 2.3831 11 6 2.0182 1.4191 2.5540 12 6 2.3308 1.7473 4.0291 13 6 3.2117 0.5494 4.4725 14 1 4.2504 0.6977 4.1769 15 6 3.1018 0.3165 5.9807 16 7 3.7553 1.4169 6.6936 17 6 3.7838 1.4245 8.0627 18 1 3.3242 0.6195 8.6168 19 6 4.4025 2.4675 8.7383 20 7 4.4304 2.4745 10.0542 21 14 5.1969 3.8602 7.7798 22 1 4.1976 4.9336 7.5465 23 1 6.3387 4.4071 8.5560 24 1 5.6860 3.3471 6.4748 25 6 2.5707 -0.6185 3.6821 26 1 -0.3634 0.5930 -0.8394 27 1 -0.3633 -1.0234 -0.0940 28 1 -0.3634 0.4303 0.9331 29 1 2.2490 -1.6316 -1.1528 30 1 2.8274 -1.5943 -3.4141 31 1 2.6891 -0.1692 -4.2932 32 1 0.9908 1.6993 2.3215 33 1 2.7057 1.9567 1.9009 34 1 1.4142 1.7904 4.6172 35 1 2.8836 2.6833 4.1100 36 1 2.0508 0.2723 6.2658 37 1 3.5884 -0.6238 6.2395 38 1 4.1685 2.1398 6.1959 39 1 4.8624 3.2035 10.5262 40 1 3.2935 -1.4219 3.5397 41 1 1.6878 -0.9894 4.2028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690703727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:24 Heat of formation + Delta-G solvation = -52.952558 kcal Electronic energy + Delta-G solvation = -22478.437039 eV Core-core repulsion = 19007.621812 eV Total energy + Delta-G solvation = -3470.815227 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.81043 -39.75185 -37.93578 -35.22684 -34.94115 -34.06121 -32.38777 -30.91583 -30.20976 -29.29674 -26.17610 -24.51963 -23.02779 -22.11985 -21.25878 -20.29836 -19.75796 -18.79933 -17.78242 -17.58697 -16.88677 -16.42629 -15.79228 -15.20650 -15.10029 -14.95461 -14.47385 -14.19781 -13.88297 -13.66257 -13.38958 -13.09406 -13.01351 -12.67159 -12.53369 -12.43791 -11.99885 -11.81961 -11.63398 -11.00047 -10.75626 -10.68517 -10.65838 -10.55521 -10.16130 -10.12758 -10.04126 -9.62397 -9.45443 -8.93827 -8.83645 -7.27692 -5.79875 -3.16029 2.15810 2.41359 2.82232 2.95745 3.34445 3.36415 3.43003 4.06154 4.13412 4.55110 4.56019 4.63684 4.75275 4.76663 4.90331 5.13793 5.24770 5.31060 5.42081 5.45669 5.51480 5.70785 5.72793 5.79133 5.83190 5.85688 5.94154 6.05720 6.11864 6.23867 6.33473 6.54040 6.57533 6.67352 7.26148 7.57847 7.82409 7.95767 8.25247 8.38868 9.17542 9.89615 10.08958 11.38459 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.032518 B = 0.003068 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.850181 B = 9125.234135 C = 9504.982051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.148 3.852 3 H 0.110 0.890 4 N -0.730 5.730 5 C 0.709 3.291 6 N -0.866 5.866 7 O -0.594 6.594 8 C 0.527 3.473 9 O -0.542 6.542 10 N -0.610 5.610 11 C 0.093 3.907 12 C -0.124 4.124 13 C -0.111 4.111 14 H 0.085 0.915 15 C 0.169 3.831 16 N -0.754 5.754 17 C -0.245 4.245 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.113 3.887 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.406 0.594 30 H 0.398 0.602 31 H 0.416 0.584 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.361 0.639 39 H 0.260 0.740 40 H 0.081 0.919 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 -6.260 -25.564 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.128 0.872 4 N -0.389 5.389 5 C 0.407 3.593 6 N -0.434 5.434 7 O -0.472 6.472 8 C 0.314 3.686 9 O -0.419 6.419 10 N -0.343 5.343 11 C -0.029 4.029 12 C -0.162 4.162 13 C -0.131 4.131 14 H 0.103 0.897 15 C 0.041 3.959 16 N -0.400 5.400 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.581 5.581 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.009 4.009 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.243 0.757 30 H 0.226 0.774 31 H 0.248 0.752 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.194 0.806 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.749 -6.005 -25.281 26.847 hybrid contribution 0.933 0.414 -0.825 1.312 sum -5.817 -5.591 -26.106 27.324 Atomic orbital electron populations 1.22093 0.92490 1.03374 1.03596 1.20585 0.95798 0.97546 0.82225 0.87246 1.44851 1.71476 1.14437 1.08095 1.15866 0.77971 0.84858 0.80567 1.42939 1.73422 1.15030 1.12000 1.90979 1.57319 1.14272 1.84664 1.20182 0.77771 0.87010 0.83628 1.90694 1.51376 1.15525 1.84307 1.48482 1.67749 1.09175 1.08928 1.22247 1.01552 0.80235 0.98884 1.22691 1.01247 0.99266 0.92973 1.22638 0.99621 0.93831 0.96963 0.89704 1.20519 0.96567 0.91940 0.86829 1.42652 1.68485 1.24752 1.04117 1.19049 1.30866 1.06994 0.80611 0.89176 1.24683 1.00729 0.98469 0.95263 1.69700 1.49148 1.33658 1.05621 0.86546 0.79362 0.83249 0.79340 1.21006 1.21721 1.20366 1.22310 1.00039 0.96649 0.81890 0.90538 0.91577 0.90866 0.75730 0.77390 0.75216 0.90926 0.91092 0.89688 0.89727 0.95020 0.95151 0.80641 0.93015 0.90082 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.47 37.16 0.35 -1.00 16 2 C 0.15 1.49 2.55 -69.08 -0.18 1.31 16 3 H 0.11 1.15 6.63 -51.93 -0.34 0.81 16 4 N -0.73 -6.77 5.06 -59.81 -0.30 -7.07 16 5 C 0.71 7.10 8.80 -86.91 -0.77 6.34 16 6 N -0.87 -4.89 8.88 27.64 0.25 -4.65 16 7 O -0.59 -8.32 16.84 5.29 0.09 -8.23 16 8 C 0.53 6.34 7.04 -10.99 -0.08 6.26 16 9 O -0.54 -7.91 16.27 5.55 0.09 -7.82 16 10 N -0.61 -7.09 3.33 -170.44 -0.57 -7.65 16 11 C 0.09 0.93 6.11 -3.06 -0.02 0.91 16 12 C -0.12 -1.48 6.28 -24.90 -0.16 -1.64 16 13 C -0.11 -1.53 3.07 -88.47 -0.27 -1.81 16 14 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 15 C 0.17 3.02 5.71 -4.04 -0.02 2.99 16 16 N -0.75 -17.11 5.30 -59.91 -0.32 -17.42 16 17 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 18 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -29.04 13.97 55.49 0.78 -28.26 16 21 Si 0.88 21.63 27.74 -169.99 -4.71 16.91 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 25 C 0.11 1.42 6.41 -2.48 -0.02 1.41 16 26 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.56 7.83 -51.93 -0.41 0.16 16 29 H 0.41 3.34 7.81 -40.82 -0.32 3.02 16 30 H 0.40 1.17 8.84 -40.82 -0.36 0.81 16 31 H 0.42 1.88 8.93 -40.82 -0.36 1.51 16 32 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 33 H 0.07 0.66 7.92 -51.93 -0.41 0.25 16 34 H 0.08 1.03 7.97 -51.93 -0.41 0.62 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.36 7.94 5.49 -40.82 -0.22 7.71 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.08 1.07 7.99 -51.92 -0.42 0.65 16 41 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -35.36 339.92 -7.19 -42.55 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.21 Total: 8.66 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -1.41 Total: 7.85 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -0.17 Total: -65.06 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.18 Total: -16.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.36 -7.19 -42.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690703727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.406 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds