Wall clock time and date at job start Tue Mar 31 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47135 * 2 1 4 4 N 1.46508 * 109.46882 * 240.00639 * 2 1 3 5 5 C 1.34778 * 119.99783 * 85.00302 * 4 2 1 6 6 N 1.34781 * 119.99718 * 179.97438 * 5 4 2 7 7 O 1.21587 * 120.00151 * 359.97438 * 5 4 2 8 8 C 1.50694 * 109.47143 * 120.00581 * 2 1 3 9 9 O 1.21287 * 119.99762 * 93.38832 * 8 2 1 10 10 N 1.34770 * 120.00392 * 273.38851 * 8 2 1 11 11 C 1.47031 * 125.64498 * 354.82234 * 10 8 2 12 12 C 1.54318 * 107.27236 * 181.09376 * 11 10 8 13 13 C 1.55163 * 102.94024 * 22.19209 * 12 11 10 14 14 H 1.09008 * 111.00383 * 82.57530 * 13 12 11 15 15 C 1.53006 * 111.00272 * 206.38301 * 13 12 11 16 16 N 1.46495 * 109.47102 * 290.42010 * 15 13 12 17 17 C 1.36936 * 119.99665 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00183 * 359.97438 * 17 16 15 19 19 C 1.38821 * 120.00188 * 180.02562 * 17 16 15 20 20 N 1.31616 * 120.00228 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99584 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47307 * 89.99786 * 21 19 17 23 23 H 1.48504 * 109.46961 * 210.00191 * 21 19 17 24 24 H 1.48504 * 109.47195 * 329.99974 * 21 19 17 25 25 C 1.47520 * 125.64190 * 174.86364 * 10 8 2 26 26 H 1.09007 * 109.47156 * 54.75711 * 1 2 3 27 27 H 1.09004 * 109.47130 * 174.75357 * 1 2 3 28 28 H 1.08993 * 109.47520 * 294.75705 * 1 2 3 29 29 H 0.96997 * 119.99500 * 264.99648 * 4 2 1 30 30 H 0.97000 * 119.99507 * 0.02562 * 6 5 4 31 31 H 0.96992 * 119.99867 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.88150 * 61.67505 * 11 10 8 33 33 H 1.09000 * 110.00867 * 300.58554 * 11 10 8 34 34 H 1.08994 * 110.72224 * 263.83268 * 12 11 10 35 35 H 1.09000 * 110.87394 * 140.62506 * 12 11 10 36 36 H 1.08992 * 109.46638 * 50.42130 * 15 13 12 37 37 H 1.08998 * 109.46955 * 170.41932 * 15 13 12 38 38 H 0.97001 * 120.00549 * 359.97438 * 16 15 13 39 39 H 0.97000 * 119.99629 * 180.02562 * 20 19 17 40 40 H 1.09008 * 110.41213 * 37.01289 * 25 10 8 41 41 H 1.08997 * 110.37758 * 274.65650 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 7 2.5968 -0.6531 -3.4576 7 8 1.8575 1.1617 -2.4117 8 6 2.0323 -0.7105 1.2303 9 8 2.2930 -1.8941 1.1831 10 7 2.1919 -0.0308 2.3831 11 6 2.0182 1.4191 2.5540 12 6 2.3308 1.7473 4.0291 13 6 3.2117 0.5494 4.4725 14 1 4.2504 0.6977 4.1769 15 6 3.1018 0.3165 5.9807 16 7 3.7553 1.4169 6.6936 17 6 3.7838 1.4245 8.0627 18 1 3.3242 0.6195 8.6168 19 6 4.4025 2.4675 8.7383 20 7 4.4304 2.4745 10.0542 21 14 5.1969 3.8602 7.7798 22 1 4.1976 4.9336 7.5465 23 1 6.3387 4.4071 8.5560 24 1 5.6860 3.3471 6.4748 25 6 2.5707 -0.6185 3.6821 26 1 -0.3634 0.5930 -0.8394 27 1 -0.3633 -1.0234 -0.0940 28 1 -0.3634 0.4303 0.9331 29 1 2.2490 -1.6316 -1.1528 30 1 2.8274 -1.5943 -3.4141 31 1 2.6891 -0.1692 -4.2932 32 1 0.9908 1.6993 2.3215 33 1 2.7057 1.9567 1.9009 34 1 1.4142 1.7904 4.6172 35 1 2.8836 2.6833 4.1100 36 1 2.0508 0.2723 6.2658 37 1 3.5884 -0.6238 6.2395 38 1 4.1685 2.1398 6.1959 39 1 4.8624 3.2035 10.5262 40 1 3.2935 -1.4219 3.5397 41 1 1.6878 -0.9894 4.2028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690703727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:23 Heat of formation + Delta-G solvation = -82.401657 kcal Electronic energy + Delta-G solvation = -22479.714048 eV Core-core repulsion = 19007.621812 eV Total energy + Delta-G solvation = -3472.092236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.68088 -40.60426 -38.99277 -36.59953 -36.04854 -34.75302 -34.01737 -32.41012 -31.07237 -30.36688 -27.53378 -25.63276 -23.98101 -23.81128 -22.06330 -21.50717 -20.59701 -19.69774 -19.47592 -18.45499 -17.78543 -17.40959 -16.63492 -16.54863 -16.11854 -15.94670 -15.73278 -15.31626 -14.97894 -14.91236 -14.88125 -14.22683 -14.15668 -13.87371 -13.63043 -13.27839 -13.26531 -13.04048 -12.80189 -12.69596 -12.21232 -12.04664 -11.79833 -11.74532 -11.61812 -11.53767 -11.05951 -10.95525 -10.73894 -10.16933 -9.76771 -9.28468 -8.01135 -5.35021 1.29681 1.39841 1.44080 1.51217 1.56433 2.06439 2.16970 2.50471 3.18094 3.30576 3.46031 3.57356 3.61397 3.83633 4.00660 4.03531 4.11666 4.28932 4.35872 4.50615 4.59746 4.62857 4.72984 4.79329 4.83040 4.97080 5.04677 5.13923 5.17808 5.19935 5.30405 5.39405 5.77413 5.79647 6.01009 6.22444 6.35446 6.88347 6.98651 7.09772 7.58362 7.85036 8.04889 9.20426 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.032518 B = 0.003068 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.850181 B = 9125.234135 C = 9504.982051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.152 3.848 3 H 0.109 0.891 4 N -0.727 5.727 5 C 0.705 3.295 6 N -0.846 5.846 7 O -0.636 6.636 8 C 0.528 3.472 9 O -0.571 6.571 10 N -0.610 5.610 11 C 0.097 3.903 12 C -0.122 4.122 13 C -0.102 4.102 14 H 0.083 0.917 15 C 0.167 3.833 16 N -0.755 5.755 17 C -0.235 4.235 18 H 0.055 0.945 19 C -0.066 4.066 20 N -0.986 5.986 21 Si 0.957 3.043 22 H -0.273 1.273 23 H -0.300 1.300 24 H -0.249 1.249 25 C 0.119 3.881 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.412 0.588 30 H 0.413 0.587 31 H 0.423 0.577 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.034 0.966 37 H 0.023 0.977 38 H 0.368 0.632 39 H 0.258 0.742 40 H 0.073 0.927 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 -5.632 -28.312 29.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.127 0.873 4 N -0.385 5.385 5 C 0.403 3.597 6 N -0.415 5.415 7 O -0.518 6.518 8 C 0.316 3.684 9 O -0.450 6.450 10 N -0.342 5.342 11 C -0.025 4.025 12 C -0.160 4.160 13 C -0.122 4.122 14 H 0.101 0.899 15 C 0.040 3.960 16 N -0.401 5.401 17 C -0.366 4.366 18 H 0.073 0.927 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.784 3.216 22 H -0.199 1.199 23 H -0.227 1.227 24 H -0.174 1.174 25 C -0.004 4.004 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.249 0.751 30 H 0.244 0.756 31 H 0.257 0.743 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.052 0.948 37 H 0.041 0.959 38 H 0.201 0.799 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.918 -5.431 -28.103 29.447 hybrid contribution 0.943 0.077 0.054 0.948 sum -5.975 -5.354 -28.050 29.174 Atomic orbital electron populations 1.22051 0.91303 1.03447 1.04112 1.20565 0.96599 0.97106 0.81506 0.87337 1.44798 1.71301 1.14600 1.07813 1.16041 0.77919 0.84429 0.81289 1.42772 1.71852 1.15777 1.11118 1.90949 1.59289 1.16143 1.85378 1.20497 0.77171 0.86671 0.84032 1.90682 1.52707 1.16849 1.84789 1.48504 1.67352 1.09923 1.08437 1.22341 1.03449 0.79120 0.97601 1.22686 1.00689 0.98375 0.94262 1.22424 1.00209 0.95606 0.93925 0.89863 1.20635 0.95884 0.90106 0.89325 1.42617 1.68838 1.26221 1.02402 1.19027 1.29201 1.05526 0.82822 0.92665 1.25556 1.02200 1.01768 0.96234 1.69894 1.51020 1.34874 1.07824 0.85381 0.77989 0.79525 0.78716 1.19929 1.22659 1.17387 1.22156 0.99960 0.95873 0.82429 0.90792 0.91570 0.89690 0.75085 0.75597 0.74340 0.88512 0.89813 0.89821 0.89439 0.94806 0.95875 0.79891 0.93362 0.90900 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.47 71.98 0.68 -1.59 16 2 C 0.15 2.74 2.55 44.24 0.11 2.85 16 3 H 0.11 2.03 6.63 -2.39 -0.02 2.01 16 4 N -0.73 -12.20 5.06 -461.40 -2.33 -14.53 16 5 C 0.71 12.94 8.80 179.05 1.58 14.52 16 6 N -0.85 -7.85 8.88 -184.74 -1.64 -9.49 16 7 O -0.64 -16.98 16.84 -3.99 -0.07 -17.05 16 8 C 0.53 11.68 7.04 87.66 0.62 12.29 16 9 O -0.57 -15.88 16.27 -3.05 -0.05 -15.93 16 10 N -0.61 -12.72 3.33 -811.55 -2.70 -15.43 16 11 C 0.10 1.61 6.11 86.73 0.53 2.14 16 12 C -0.12 -2.59 6.28 31.78 0.20 -2.39 16 13 C -0.10 -2.63 3.07 -9.40 -0.03 -2.66 16 14 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 15 C 0.17 5.81 5.71 86.38 0.49 6.30 16 16 N -0.75 -33.42 5.30 -343.46 -1.82 -35.24 16 17 C -0.23 -13.13 10.47 84.04 0.88 -12.25 16 18 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.99 -62.79 13.97 21.65 0.30 -62.49 16 21 Si 0.96 44.18 27.74 68.60 1.90 46.08 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 24 H -0.25 -10.23 6.52 99.48 0.65 -9.58 16 25 C 0.12 2.78 6.41 86.84 0.56 3.34 16 26 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 1.07 7.83 -2.39 -0.02 1.05 16 29 H 0.41 6.06 7.81 -92.71 -0.72 5.34 16 30 H 0.41 1.46 8.84 -92.71 -0.82 0.64 16 31 H 0.42 2.98 8.93 -92.71 -0.83 2.15 16 32 H 0.10 1.21 7.83 -2.39 -0.02 1.19 16 33 H 0.08 1.25 7.92 -2.39 -0.02 1.23 16 34 H 0.08 1.81 7.97 -2.39 -0.02 1.80 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.03 1.18 8.04 -2.39 -0.02 1.16 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.37 15.28 5.49 -92.71 -0.51 14.77 16 39 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.07 1.84 7.99 -2.38 -0.02 1.82 16 41 H 0.08 1.81 8.04 -2.39 -0.02 1.79 16 Total: -1.00 -77.05 339.92 -2.18 -79.23 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: -1.86 Total: 25.66 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 6.08 Total: 19.18 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -8.19 Total: -137.17 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.12 Total: -32.98 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.08 kcal Total: -77.05 -2.18 -79.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690703727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.169 kcal (2) G-P(sol) polarization free energy of solvation -77.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds