Wall clock time and date at job start Tue Mar 31 2020 03:03:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47329 * 2 1
4 4 N 1.46506 * 109.47056 * 240.00605 * 2 1 3
5 5 C 1.34772 * 120.00047 * 84.99776 * 4 2 1
6 6 N 1.34784 * 119.99728 * 179.97438 * 5 4 2
7 7 O 1.21584 * 120.00495 * 0.02562 * 5 4 2
8 8 C 1.50697 * 109.47169 * 120.00318 * 2 1 3
9 9 O 1.21291 * 120.00033 * 120.00293 * 8 2 1
10 10 N 1.34776 * 120.00123 * 299.99767 * 8 2 1
11 11 C 1.46497 * 120.00004 * 179.97438 * 10 8 2
12 12 C 1.53006 * 109.47173 * 180.02562 * 11 10 8
13 13 H 1.09002 * 112.84791 * 45.33545 * 12 11 10
14 14 C 1.53781 * 113.61570 * 176.53083 * 12 11 10
15 15 C 1.53780 * 87.07624 * 139.98161 * 14 12 11
16 16 H 1.09002 * 113.61124 * 89.20642 * 15 14 12
17 17 N 1.46509 * 113.61150 * 220.01703 * 15 14 12
18 18 C 1.36929 * 119.99788 * 205.00735 * 17 15 14
19 19 H 1.08004 * 120.00734 * 359.97438 * 18 17 15
20 20 C 1.38815 * 120.00109 * 180.02562 * 18 17 15
21 21 N 1.31619 * 120.00440 * 179.97438 * 20 18 17
22 22 Si 1.86806 * 119.99647 * 359.97438 * 20 18 17
23 23 H 1.48505 * 109.46866 * 89.99852 * 22 20 18
24 24 H 1.48498 * 109.47157 * 209.99998 * 22 20 18
25 25 H 1.48500 * 109.47233 * 330.00176 * 22 20 18
26 26 C 1.53780 * 113.61448 * 274.14228 * 12 11 10
27 27 H 1.08999 * 109.47037 * 59.99735 * 1 2 3
28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3
29 29 H 1.09002 * 109.47019 * 299.99661 * 1 2 3
30 30 H 0.97000 * 119.99400 * 264.99516 * 4 2 1
31 31 H 0.96997 * 119.99827 * 0.02562 * 6 5 4
32 32 H 0.96996 * 119.99738 * 179.97438 * 6 5 4
33 33 H 0.97002 * 119.99738 * 0.02562 * 10 8 2
34 34 H 1.09006 * 109.47301 * 60.00545 * 11 10 8
35 35 H 1.08996 * 109.47804 * 300.00196 * 11 10 8
36 36 H 1.08994 * 113.60887 * 254.53194 * 14 12 11
37 37 H 1.09002 * 113.61213 * 25.35044 * 14 12 11
38 38 H 0.97000 * 119.99785 * 25.00105 * 17 15 14
39 39 H 0.97006 * 120.00112 * 180.02562 * 21 20 18
40 40 H 1.09000 * 113.61461 * 334.56153 * 26 12 11
41 41 H 1.08995 * 113.61894 * 105.46890 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6905 -1.1963
5 6 2.1470 -0.0181 -2.3572
6 7 2.5968 -0.6533 -3.4576
7 8 1.8583 1.1617 -2.4116
8 6 2.0323 -0.7105 1.2304
9 8 2.7297 -1.6966 1.1191
10 7 1.7068 -0.2501 2.4545
11 6 2.1947 -0.9411 3.6506
12 6 1.6843 -0.2202 4.9000
13 1 0.6271 0.0377 4.8376
14 6 2.0719 -0.9171 6.2149
15 6 2.3274 0.4856 6.7912
16 1 1.4466 0.9370 7.2479
17 7 3.5139 0.5610 7.6473
18 6 3.6018 1.5289 8.6119
19 1 2.7966 2.2370 8.7414
20 6 4.7262 1.6008 9.4227
21 7 4.8110 2.5315 10.3495
22 14 6.1193 0.3766 9.1983
23 1 7.0971 0.9137 8.2181
24 1 6.7961 0.1527 10.5009
25 1 5.5719 -0.9097 8.6972
26 6 2.5784 0.9493 5.3449
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 2.2491 -1.6317 -1.1527
31 1 2.8275 -1.5944 -3.4140
32 1 2.6890 -0.1694 -4.2932
33 1 1.1488 0.5384 2.5436
34 1 3.2847 -0.9415 3.6508
35 1 1.8310 -1.9686 3.6505
36 1 1.2436 -1.4409 6.6919
37 1 2.9707 -1.5287 6.1364
38 1 4.2372 -0.0747 7.5308
39 1 5.5969 2.5819 10.9159
40 1 3.6167 0.8499 5.0285
41 1 2.1585 1.9298 5.1207
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691090632.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:03:17
Heat of formation + Delta-G solvation = -40.314133 kcal
Electronic energy + Delta-G solvation = -21908.813164 eV
Core-core repulsion = 18438.545980 eV
Total energy + Delta-G solvation = -3470.267184 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 284.164 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.72841 -39.62329 -38.62431 -35.30663 -34.94137 -34.06223 -33.38591 -31.00331
-30.42756 -27.63951 -25.25842 -24.85034 -23.57870 -21.58240 -21.06272 -20.55281
-19.47406 -18.89726 -17.96227 -17.45447 -16.59216 -16.41756 -15.91340 -15.48257
-15.10207 -14.85989 -14.60578 -14.45304 -13.99157 -13.93869 -13.44226 -12.88319
-12.72840 -12.69992 -12.28494 -12.02583 -12.00548 -11.66691 -11.60893 -10.93150
-10.68090 -10.52645 -10.43340 -10.17421 -10.09223 -10.01923 -9.86641 -9.58841
-9.45251 -9.22244 -8.91968 -7.29828 -5.80648 -3.16381 2.30713 2.32944
2.84807 3.06928 3.35584 3.38651 3.43744 4.09845 4.32860 4.56008
4.67111 4.77225 4.80540 4.83698 5.05439 5.18640 5.34035 5.37529
5.37906 5.59366 5.66046 5.73689 5.75398 5.78967 6.01440 6.08891
6.13457 6.17670 6.26590 6.33583 6.46292 6.54345 6.63477 6.93694
7.22148 7.58169 7.90000 7.95497 8.25545 8.39075 9.16775 9.89506
10.09090 11.37491
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.029909 B = 0.002665 C = 0.002617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 935.941653 B =10503.460773 C =10695.373784
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.143 3.857
3 H 0.116 0.884
4 N -0.728 5.728
5 C 0.709 3.291
6 N -0.866 5.866
7 O -0.595 6.595
8 C 0.509 3.491
9 O -0.541 6.541
10 N -0.717 5.717
11 C 0.132 3.868
12 C -0.127 4.127
13 H 0.092 0.908
14 C -0.145 4.145
15 C 0.172 3.828
16 H 0.084 0.916
17 N -0.737 5.737
18 C -0.249 4.249
19 H 0.091 0.909
20 C 0.005 3.995
21 N -0.933 5.933
22 Si 0.884 3.116
23 H -0.284 1.284
24 H -0.290 1.290
25 H -0.277 1.277
26 C -0.162 4.162
27 H 0.075 0.925
28 H 0.063 0.937
29 H 0.074 0.926
30 H 0.406 0.594
31 H 0.398 0.602
32 H 0.415 0.585
33 H 0.404 0.596
34 H 0.070 0.930
35 H 0.066 0.934
36 H 0.065 0.935
37 H 0.078 0.922
38 H 0.362 0.638
39 H 0.260 0.740
40 H 0.077 0.923
41 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.411 -9.411 -24.856 28.195
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.033 3.967
3 H 0.134 0.866
4 N -0.386 5.386
5 C 0.407 3.593
6 N -0.434 5.434
7 O -0.473 6.473
8 C 0.294 3.706
9 O -0.419 6.419
10 N -0.368 5.368
11 C 0.009 3.991
12 C -0.147 4.147
13 H 0.110 0.890
14 C -0.185 4.185
15 C 0.061 3.939
16 H 0.102 0.898
17 N -0.377 5.377
18 C -0.379 4.379
19 H 0.109 0.891
20 C -0.191 4.191
21 N -0.580 5.580
22 Si 0.714 3.286
23 H -0.210 1.210
24 H -0.217 1.217
25 H -0.203 1.203
26 C -0.203 4.203
27 H 0.094 0.906
28 H 0.082 0.918
29 H 0.092 0.908
30 H 0.242 0.758
31 H 0.226 0.774
32 H 0.248 0.752
33 H 0.239 0.761
34 H 0.088 0.912
35 H 0.085 0.915
36 H 0.084 0.916
37 H 0.097 0.903
38 H 0.195 0.805
39 H 0.070 0.930
40 H 0.096 0.904
41 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -9.205 -8.923 -24.570 27.714
hybrid contribution 1.148 -1.153 -0.359 1.666
sum -8.057 -10.076 -24.930 28.070
Atomic orbital electron populations
1.22162 0.92819 1.03086 1.03800 1.20606 0.95499 0.97935 0.82653
0.86586 1.44769 1.71418 1.14440 1.07959 1.15864 0.77964 0.84837
0.80596 1.42939 1.73396 1.15041 1.12023 1.90980 1.57398 1.14242
1.84691 1.20560 0.80354 0.84758 0.84943 1.90701 1.37982 1.26506
1.86678 1.45962 1.53271 1.32110 1.05448 1.21477 0.99453 0.95804
0.82409 1.22651 1.00047 0.98909 0.93050 0.88966 1.23464 1.01252
0.99096 0.94664 1.21535 0.91086 0.92739 0.88582 0.89789 1.42762
1.18184 1.36826 1.39882 1.19134 1.03728 1.06842 1.08167 0.89121
1.24704 0.98110 0.98343 0.97970 1.69703 1.29879 1.35165 1.23239
0.86554 0.83251 0.81566 0.77187 1.21049 1.21684 1.20276 1.23951
0.98993 0.96536 1.00800 0.90628 0.91818 0.90760 0.75755 0.77401
0.75234 0.76141 0.91169 0.91529 0.91593 0.90347 0.80453 0.93008
0.90447 0.92161
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.11 9.38 37.16 0.35 -0.76 16
2 C 0.14 1.26 2.98 -69.08 -0.21 1.06 16
3 H 0.12 1.11 7.58 -51.93 -0.39 0.72 16
4 N -0.73 -6.32 4.96 -59.81 -0.30 -6.61 16
5 C 0.71 6.92 8.80 -86.92 -0.77 6.15 16
6 N -0.87 -4.78 8.88 27.63 0.25 -4.53 16
7 O -0.59 -8.20 16.84 5.29 0.09 -8.11 16
8 C 0.51 5.40 7.22 -10.99 -0.08 5.32 16
9 O -0.54 -7.49 15.84 5.55 0.09 -7.40 16
10 N -0.72 -6.73 5.45 -60.29 -0.33 -7.06 16
11 C 0.13 1.47 5.50 -4.04 -0.02 1.45 16
12 C -0.13 -1.47 3.75 -89.80 -0.34 -1.80 16
13 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
14 C -0.15 -2.04 7.40 -25.92 -0.19 -2.23 16
15 C 0.17 3.07 4.48 -67.03 -0.30 2.77 16
16 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16
17 N -0.74 -16.96 5.21 -52.55 -0.27 -17.23 16
18 C -0.25 -6.90 10.45 -15.06 -0.16 -7.06 16
19 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16
20 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16
21 N -0.93 -29.10 13.97 55.49 0.78 -28.32 16
22 Si 0.88 21.98 27.74 -169.99 -4.71 17.26 16
23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16
24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
25 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16
26 C -0.16 -2.41 7.45 -25.83 -0.19 -2.60 16
27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
29 H 0.07 0.39 7.56 -51.93 -0.39 0.00 16
30 H 0.41 3.12 7.80 -40.82 -0.32 2.80 16
31 H 0.40 1.12 8.84 -40.82 -0.36 0.76 16
32 H 0.42 1.84 8.93 -40.82 -0.36 1.48 16
33 H 0.40 2.87 7.89 -40.82 -0.32 2.54 16
34 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16
35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
37 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16
38 H 0.36 8.25 5.79 -40.82 -0.24 8.01 16
39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16
40 H 0.08 1.26 7.92 -51.93 -0.41 0.85 16
41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
LS Contribution 344.10 15.07 5.19 5.19
Total: -1.00 -35.78 344.10 -7.41 -43.19
By element:
Atomic # 1 Polarization: 17.49 SS G_CDS: -6.18 Total: 11.31 kcal
Atomic # 6 Polarization: 4.32 SS G_CDS: -2.00 Total: 2.33 kcal
Atomic # 7 Polarization: -63.89 SS G_CDS: 0.12 Total: -63.76 kcal
Atomic # 8 Polarization: -15.69 SS G_CDS: 0.18 Total: -15.51 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -35.78 -7.41 -43.19 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691090632.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.874 kcal
(2) G-P(sol) polarization free energy of solvation -35.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.909 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.314 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds